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Items: 1 to 20 of 122

1.

ConPlex: a server for the evolutionary conservation analysis of protein complex structures.

Choi YS, Han SK, Kim J, Yang JS, Jeon J, Ryu SH, Kim S.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W450-6. doi: 10.1093/nar/gkq328. Epub 2010 Apr 30.

2.

MolSurfer: A macromolecular interface navigator.

Gabdoulline RR, Wade RC, Walther D.

Nucleic Acids Res. 2003 Jul 1;31(13):3349-51.

3.

Evolutionary conservation in multiple faces of protein interaction.

Choi YS, Yang JS, Choi Y, Ryu SH, Kim S.

Proteins. 2009 Oct;77(1):14-25. doi: 10.1002/prot.22410.

PMID:
19350617
4.

The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures.

Goldenberg O, Erez E, Nimrod G, Ben-Tal N.

Nucleic Acids Res. 2009 Jan;37(Database issue):D323-7. doi: 10.1093/nar/gkn822. Epub 2008 Oct 29.

5.

SVC: structured visualization of evolutionary sequence conservation.

Roepcke S, Fiziev P, Seeburg PH, Vingron M.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W271-3.

6.

SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.

Teyra J, Doms A, Schroeder M, Pisabarro MT.

BMC Bioinformatics. 2006 Mar 2;7:104.

7.

BSDD: Biomolecules Segment Display Device--a web-based interactive display tool.

Selvarani P, Shanthi V, Rajesh CK, Saravanan S, Sekar K.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W645-8.

8.

The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.

Glaser F, Rosenberg Y, Kessel A, Pupko T, Ben-Tal N.

Proteins. 2005 Feb 15;58(3):610-7.

PMID:
15614759
9.

COLORADO3D, a web server for the visual analysis of protein structures.

Sasin JM, Bujnicki JM.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W586-9.

10.

PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes.

Baspinar A, Cukuroglu E, Nussinov R, Keskin O, Gursoy A.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W285-9. doi: 10.1093/nar/gku397. Epub 2014 May 14.

11.

The design of Jemboss: a graphical user interface to EMBOSS.

Carver T, Bleasby A.

Bioinformatics. 2003 Sep 22;19(14):1837-43.

PMID:
14512356
12.

PreBI: prediction of biological interfaces of proteins in crystals.

Tsuchiya Y, Kinoshita K, Ito N, Nakamura H.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W320-4.

13.
14.

SRide: a server for identifying stabilizing residues in proteins.

Magyar C, Gromiha MM, Pujadas G, Tusnády GE, Simon I.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W303-5.

15.

HexServer: an FFT-based protein docking server powered by graphics processors.

Macindoe G, Mavridis L, Venkatraman V, Devignes MD, Ritchie DW.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W445-9. doi: 10.1093/nar/gkq311. Epub 2010 May 5.

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18.

SLiMFinder: a web server to find novel, significantly over-represented, short protein motifs.

Davey NE, Haslam NJ, Shields DC, Edwards RJ.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W534-9. doi: 10.1093/nar/gkq440. Epub 2010 May 23.

19.

ADVICE: Automated Detection and Validation of Interaction by Co-Evolution.

Tan SH, Zhang Z, Ng SK.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W69-72.

20.

ANTHEPROT: an integrated protein sequence analysis software with client/server capabilities.

Deléage G, Combet C, Blanchet C, Geourjon C.

Comput Biol Med. 2001 Jul;31(4):259-67.

PMID:
11334635

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