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Items: 1 to 20 of 62

1.

Bioinformatic characterization of the Anoctamin Superfamily of Ca2+-activated ion channels and lipid scramblases.

Medrano-Soto A, Moreno-Hagelsieb G, McLaughlin D, Ye ZS, Hendargo KJ, Saier MH Jr.

PLoS One. 2018 Mar 26;13(3):e0192851. doi: 10.1371/journal.pone.0192851. eCollection 2018.

2.

The Membrane Attack Complex/Perforin Superfamily.

Moreno-Hagelsieb G, Vitug B, Medrano-Soto A, Saier MH Jr.

J Mol Microbiol Biotechnol. 2017;27(4):252-267. doi: 10.1159/000481286. Epub 2017 Nov 17.

3.

Genome Comparison of Pseudomonas fluorescens UM270 with Related Fluorescent Strains Unveils Genes Involved in Rhizosphere Competence and Colonization.

Hernández-Salmerón JE, Moreno-Hagelsieb G, Santoyo G.

J Genomics. 2017 Aug 24;5:91-98. doi: 10.7150/jgen.21588. eCollection 2017.

4.

Inferring Functional Relationships from Conservation of Gene Order.

Moreno-Hagelsieb G.

Methods Mol Biol. 2017;1526:41-63.

PMID:
27896735
5.

Association of host genome with intestinal microbial composition in a large healthy cohort.

Turpin W, Espin-Garcia O, Xu W, Silverberg MS, Kevans D, Smith MI, Guttman DS, Griffiths A, Panaccione R, Otley A, Xu L, Shestopaloff K, Moreno-Hagelsieb G; GEM Project Research Consortium, Paterson AD, Croitoru K.

Nat Genet. 2016 Nov;48(11):1413-1417. doi: 10.1038/ng.3693. Epub 2016 Oct 3.

PMID:
27694960
6.

Analysis of 58 Families of Holins Using a Novel Program, PhyST.

Kuppusamykrishnan H, Chau LM, Moreno-Hagelsieb G, Saier MH Jr.

J Mol Microbiol Biotechnol. 2016;26(6):381-388. Epub 2016 Aug 24.

7.

Plant growth-promoting bacterial endophytes.

Santoyo G, Moreno-Hagelsieb G, Orozco-Mosqueda Mdel C, Glick BR.

Microbiol Res. 2016 Feb;183:92-9. doi: 10.1016/j.micres.2015.11.008. Epub 2015 Nov 25. Review.

8.

Draft Genome Sequence of the Biocontrol and Plant Growth-Promoting Rhizobacterium Pseudomonas fluorescens strain UM270.

Hernández-Salmerón JE, Hernández-León R, Orozco-Mosqueda Mdel C, Valencia-Cantero E, Moreno-Hagelsieb G, Santoyo G.

Stand Genomic Sci. 2016 Jan 13;11:5. doi: 10.1186/s40793-015-0123-9. eCollection 2016.

9.

Predicting Functional Interactions Among Genes in Prokaryotes by Genomic Context.

Moreno-Hagelsieb G, Santoyo G.

Adv Exp Med Biol. 2015;883:97-106. doi: 10.1007/978-3-319-23603-2_5. Review.

PMID:
26621463
10.

The Transporter Classification Database (TCDB): recent advances.

Saier MH Jr, Reddy VS, Tsu BV, Ahmed MS, Li C, Moreno-Hagelsieb G.

Nucleic Acids Res. 2016 Jan 4;44(D1):D372-9. doi: 10.1093/nar/gkv1103. Epub 2015 Nov 5.

11.

Remote homology and the functions of metagenomic dark matter.

Lobb B, Kurtz DA, Moreno-Hagelsieb G, Doxey AC.

Front Genet. 2015 Jul 21;6:234. doi: 10.3389/fgene.2015.00234. eCollection 2015.

12.

The power of operon rearrangements for predicting functional associations.

Moreno-Hagelsieb G.

Comput Struct Biotechnol J. 2015 Jul 2;13:402-6. doi: 10.1016/j.csbj.2015.06.002. eCollection 2015. Review.

13.

The functional landscape bound to the transcription factors of Escherichia coli K-12.

Pérez-Rueda E, Tenorio-Salgado S, Huerta-Saquero A, Balderas-Martínez YI, Moreno-Hagelsieb G.

Comput Biol Chem. 2015 Oct;58:93-103. doi: 10.1016/j.compbiolchem.2015.06.002. Epub 2015 Jun 6.

PMID:
26094112
14.

Determinants of intestinal permeability in healthy first-degree relatives of individuals with Crohn's disease.

Kevans D, Turpin W, Madsen K, Meddings J, Shestopaloff K, Xu W, Moreno-Hagelsieb G, Griffiths A, Silverberg MS, Paterson A, Croitoru K; GEM Project.

Inflamm Bowel Dis. 2015 Apr;21(4):879-87. doi: 10.1097/MIB.0000000000000323. Erratum in: Inflamm Bowel Dis. 2015 Jul.21(7):1673.

PMID:
25734694
15.

The loose evolutionary relationships between transcription factors and other gene products across prokaryotes.

del Grande M, Moreno-Hagelsieb G.

BMC Res Notes. 2014 Dec 17;7:928. doi: 10.1186/1756-0500-7-928.

16.

Estimating overannotation across prokaryotic genomes using BLAST+, UBLAST, LAST and BLAT.

Moreno-Hagelsieb G, Hudy-Yuffa B.

BMC Res Notes. 2014 Sep 16;7:651. doi: 10.1186/1756-0500-7-651.

17.

Isolation and characterization of genetic variability in bacteria with β-hemolytic and antifungal activity isolated from the rhizosphere of Medicago truncatula plants.

Hernández-Salmerón JE, Prieto-Barajas CM, Valencia-Cantero E, Moreno-Hagelsieb G, Santoyo G.

Genet Mol Res. 2014 Jul 4;13(3):4967-75. doi: 10.4238/2014.July.4.11.

18.

Quickly finding orthologs as reciprocal best hits with BLAT, LAST, and UBLAST: how much do we miss?

Ward N, Moreno-Hagelsieb G.

PLoS One. 2014 Jul 11;9(7):e101850. doi: 10.1371/journal.pone.0101850. eCollection 2014.

19.

Evaluating bias of illumina-based bacterial 16S rRNA gene profiles.

Kennedy K, Hall MW, Lynch MD, Moreno-Hagelsieb G, Neufeld JD.

Appl Environ Microbiol. 2014 Sep;80(18):5717-22. doi: 10.1128/AEM.01451-14. Epub 2014 Jul 7.

20.

Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli.

Babu M, Arnold R, Bundalovic-Torma C, Gagarinova A, Wong KS, Kumar A, Stewart G, Samanfar B, Aoki H, Wagih O, Vlasblom J, Phanse S, Lad K, Yeou Hsiung Yu A, Graham C, Jin K, Brown E, Golshani A, Kim P, Moreno-Hagelsieb G, Greenblatt J, Houry WA, Parkinson J, Emili A.

PLoS Genet. 2014 Feb 20;10(2):e1004120. doi: 10.1371/journal.pgen.1004120. eCollection 2014 Feb.

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