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Items: 1 to 20 of 63

1.

Environmentally-driven gene content convergence and the Bacillus phylogeny.

Hernández-González IL, Moreno-Hagelsieb G, Olmedo-Álvarez G.

BMC Evol Biol. 2018 Oct 3;18(1):148. doi: 10.1186/s12862-018-1261-7.

2.

Bioinformatic characterization of the Anoctamin Superfamily of Ca2+-activated ion channels and lipid scramblases.

Medrano-Soto A, Moreno-Hagelsieb G, McLaughlin D, Ye ZS, Hendargo KJ, Saier MH Jr.

PLoS One. 2018 Mar 26;13(3):e0192851. doi: 10.1371/journal.pone.0192851. eCollection 2018.

3.

The Membrane Attack Complex/Perforin Superfamily.

Moreno-Hagelsieb G, Vitug B, Medrano-Soto A, Saier MH Jr.

J Mol Microbiol Biotechnol. 2017;27(4):252-267. doi: 10.1159/000481286. Epub 2017 Nov 17.

4.

Genome Comparison of Pseudomonas fluorescens UM270 with Related Fluorescent Strains Unveils Genes Involved in Rhizosphere Competence and Colonization.

Hernández-Salmerón JE, Moreno-Hagelsieb G, Santoyo G.

J Genomics. 2017 Aug 24;5:91-98. doi: 10.7150/jgen.21588. eCollection 2017.

5.

Inferring Functional Relationships from Conservation of Gene Order.

Moreno-Hagelsieb G.

Methods Mol Biol. 2017;1526:41-63.

PMID:
27896735
6.

Association of host genome with intestinal microbial composition in a large healthy cohort.

Turpin W, Espin-Garcia O, Xu W, Silverberg MS, Kevans D, Smith MI, Guttman DS, Griffiths A, Panaccione R, Otley A, Xu L, Shestopaloff K, Moreno-Hagelsieb G; GEM Project Research Consortium, Paterson AD, Croitoru K.

Nat Genet. 2016 Nov;48(11):1413-1417. doi: 10.1038/ng.3693. Epub 2016 Oct 3.

PMID:
27694960
7.

Analysis of 58 Families of Holins Using a Novel Program, PhyST.

Kuppusamykrishnan H, Chau LM, Moreno-Hagelsieb G, Saier MH Jr.

J Mol Microbiol Biotechnol. 2016;26(6):381-388. Epub 2016 Aug 24.

8.

Plant growth-promoting bacterial endophytes.

Santoyo G, Moreno-Hagelsieb G, Orozco-Mosqueda Mdel C, Glick BR.

Microbiol Res. 2016 Feb;183:92-9. doi: 10.1016/j.micres.2015.11.008. Epub 2015 Nov 25. Review.

9.

Draft Genome Sequence of the Biocontrol and Plant Growth-Promoting Rhizobacterium Pseudomonas fluorescens strain UM270.

Hernández-Salmerón JE, Hernández-León R, Orozco-Mosqueda Mdel C, Valencia-Cantero E, Moreno-Hagelsieb G, Santoyo G.

Stand Genomic Sci. 2016 Jan 13;11:5. doi: 10.1186/s40793-015-0123-9. eCollection 2016.

10.

Predicting Functional Interactions Among Genes in Prokaryotes by Genomic Context.

Moreno-Hagelsieb G, Santoyo G.

Adv Exp Med Biol. 2015;883:97-106. doi: 10.1007/978-3-319-23603-2_5. Review.

PMID:
26621463
11.

The Transporter Classification Database (TCDB): recent advances.

Saier MH Jr, Reddy VS, Tsu BV, Ahmed MS, Li C, Moreno-Hagelsieb G.

Nucleic Acids Res. 2016 Jan 4;44(D1):D372-9. doi: 10.1093/nar/gkv1103. Epub 2015 Nov 5.

12.

Remote homology and the functions of metagenomic dark matter.

Lobb B, Kurtz DA, Moreno-Hagelsieb G, Doxey AC.

Front Genet. 2015 Jul 21;6:234. doi: 10.3389/fgene.2015.00234. eCollection 2015.

13.

The power of operon rearrangements for predicting functional associations.

Moreno-Hagelsieb G.

Comput Struct Biotechnol J. 2015 Jul 2;13:402-6. doi: 10.1016/j.csbj.2015.06.002. eCollection 2015. Review.

14.

The functional landscape bound to the transcription factors of Escherichia coli K-12.

Pérez-Rueda E, Tenorio-Salgado S, Huerta-Saquero A, Balderas-Martínez YI, Moreno-Hagelsieb G.

Comput Biol Chem. 2015 Oct;58:93-103. doi: 10.1016/j.compbiolchem.2015.06.002. Epub 2015 Jun 6.

PMID:
26094112
15.

Determinants of intestinal permeability in healthy first-degree relatives of individuals with Crohn's disease.

Kevans D, Turpin W, Madsen K, Meddings J, Shestopaloff K, Xu W, Moreno-Hagelsieb G, Griffiths A, Silverberg MS, Paterson A, Croitoru K; GEM Project.

Inflamm Bowel Dis. 2015 Apr;21(4):879-87. doi: 10.1097/MIB.0000000000000323. Erratum in: Inflamm Bowel Dis. 2015 Jul.21(7):1673.

PMID:
25734694
16.

The loose evolutionary relationships between transcription factors and other gene products across prokaryotes.

del Grande M, Moreno-Hagelsieb G.

BMC Res Notes. 2014 Dec 17;7:928. doi: 10.1186/1756-0500-7-928.

17.

Estimating overannotation across prokaryotic genomes using BLAST+, UBLAST, LAST and BLAT.

Moreno-Hagelsieb G, Hudy-Yuffa B.

BMC Res Notes. 2014 Sep 16;7:651. doi: 10.1186/1756-0500-7-651.

18.

Isolation and characterization of genetic variability in bacteria with β-hemolytic and antifungal activity isolated from the rhizosphere of Medicago truncatula plants.

Hernández-Salmerón JE, Prieto-Barajas CM, Valencia-Cantero E, Moreno-Hagelsieb G, Santoyo G.

Genet Mol Res. 2014 Jul 4;13(3):4967-75. doi: 10.4238/2014.July.4.11.

19.

Quickly finding orthologs as reciprocal best hits with BLAT, LAST, and UBLAST: how much do we miss?

Ward N, Moreno-Hagelsieb G.

PLoS One. 2014 Jul 11;9(7):e101850. doi: 10.1371/journal.pone.0101850. eCollection 2014.

20.

Evaluating bias of illumina-based bacterial 16S rRNA gene profiles.

Kennedy K, Hall MW, Lynch MD, Moreno-Hagelsieb G, Neufeld JD.

Appl Environ Microbiol. 2014 Sep;80(18):5717-22. doi: 10.1128/AEM.01451-14. Epub 2014 Jul 7.

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