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Items: 1 to 20 of 120

1.

Advancing computational biology and bioinformatics research through open innovation competitions.

Blasco A, Endres MG, Sergeev RA, Jonchhe A, Macaluso NJM, Narayan R, Natoli T, Paik JH, Briney B, Wu C, Su AI, Subramanian A, Lakhani KR.

PLoS One. 2019 Sep 27;14(9):e0222165. doi: 10.1371/journal.pone.0222165. eCollection 2019.

2.

Applying Citizen Science to Gene, Drug, and Disease Relationship Extraction from Biomedical Abstracts.

Tsueng G, Nanis M, Fouquier JT, Mayers M, Good BM, Su AI.

Bioinformatics. 2019 Sep 3. pii: btz678. doi: 10.1093/bioinformatics/btz678. [Epub ahead of print]

PMID:
31504205
3.

Aligning Needs: Integrating Citizen Science Efforts into Schools Through Service Requirements.

Tsueng G, Kumar A, Nanis SM, Su AI.

Hum Comput (Fairfax). 2019;6(1):56-82.

4.

The Healthy Pregnancy Research Program: transforming pregnancy research through a ResearchKit app.

Radin JM, Steinhubl SR, Su AI, Bhargava H, Greenberg B, Bot BM, Doerr M, Topol EJ.

NPJ Digit Med. 2018 Sep 5;1:45. doi: 10.1038/s41746-018-0052-2. eCollection 2018.

5.

ChlamBase: a curated model organism database for the Chlamydia research community.

Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Stupp GS, Waagmeester A, Good BM, Wu C, Su AI.

Database (Oxford). 2019 Jan 1;2019. pii: baz091. doi: 10.1093/database/baz091. No abstract available.

6.

[Research progress on Chinese herbal medicine fermentation and profile of active substances derived].

Ai S, Tang W, Guo RL, Li JQ, Yang W, He ZG.

Zhongguo Zhong Yao Za Zhi. 2019 Mar;44(6):1110-1118. doi: 10.19540/j.cnki.cjcmm.20181227.002. Review. Chinese.

PMID:
30989972
7.

ChlamBase: a curated model organism database for the Chlamydia research community.

Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Wu C, Su AI.

Database (Oxford). 2019 Jan 1;2019. pii: baz041. doi: 10.1093/database/baz041. Erratum in: Database (Oxford). 2019 Jan 1;2019:.

8.

exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.

Murillo OD, Thistlethwaite W, Rozowsky J, Subramanian SL, Lucero R, Shah N, Jackson AR, Srinivasan S, Chung A, Laurent CD, Kitchen RR, Galeev T, Warrell J, Diao JA, Welsh JA, Hanspers K, Riutta A, Burgstaller-Muehlbacher S, Shah RV, Yeri A, Jenkins LM, Ahsen ME, Cordon-Cardo C, Dogra N, Gifford SM, Smith JT, Stolovitzky G, Tewari AK, Wunsch BH, Yadav KK, Danielson KM, Filant J, Moeller C, Nejad P, Paul A, Simonson B, Wong DK, Zhang X, Balaj L, Gandhi R, Sood AK, Alexander RP, Wang L, Wu C, Wong DTW, Galas DJ, Van Keuren-Jensen K, Patel T, Jones JC, Das S, Cheung KH, Pico AR, Su AI, Raffai RL, Laurent LC, Roth ME, Gerstein MB, Milosavljevic A.

Cell. 2019 Apr 4;177(2):463-477.e15. doi: 10.1016/j.cell.2019.02.018.

9.

The ReFRAME library as a comprehensive drug repurposing library and its application to the treatment of cryptosporidiosis.

Janes J, Young ME, Chen E, Rogers NH, Burgstaller-Muehlbacher S, Hughes LD, Love MS, Hull MV, Kuhen KL, Woods AK, Joseph SB, Petrassi HM, McNamara CW, Tremblay MS, Su AI, Schultz PG, Chatterjee AK.

Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):10750-10755. doi: 10.1073/pnas.1810137115. Epub 2018 Oct 3.

10.

Identification of transcription factors responsible for dysregulated networks in human osteoarthritis cartilage by global gene expression analysis.

Fisch KM, Gamini R, Alvarez-Garcia O, Akagi R, Saito M, Muramatsu Y, Sasho T, Koziol JA, Su AI, Lotz MK.

Osteoarthritis Cartilage. 2018 Nov;26(11):1531-1538. doi: 10.1016/j.joca.2018.07.012. Epub 2018 Aug 3.

PMID:
30081074
11.

Triflic Acid Treatment Enables LC-MS/MS Analysis of Insoluble Bacterial Biomass.

Wang AY, Thuy-Boun PS, Stupp GS, Su AI, Wolan DW.

J Proteome Res. 2018 Sep 7;17(9):2978-2986. doi: 10.1021/acs.jproteome.8b00166. Epub 2018 Aug 8.

PMID:
30019906
12.

Correcting the F508del-CFTR variant by modulating eukaryotic translation initiation factor 3-mediated translation initiation.

Hutt DM, Loguercio S, Roth DM, Su AI, Balch WE.

J Biol Chem. 2018 Aug 31;293(35):13477-13495. doi: 10.1074/jbc.RA118.003192. Epub 2018 Jul 13.

13.

A genome-wide survey of mutations in the Jurkat cell line.

Gioia L, Siddique A, Head SR, Salomon DR, Su AI.

BMC Genomics. 2018 May 8;19(1):334. doi: 10.1186/s12864-018-4718-6.

14.

Common PIEZO1 Allele in African Populations Causes RBC Dehydration and Attenuates Plasmodium Infection.

Ma S, Cahalan S, LaMonte G, Grubaugh ND, Zeng W, Murthy SE, Paytas E, Gamini R, Lukacs V, Whitwam T, Loud M, Lohia R, Berry L, Khan SM, Janse CJ, Bandell M, Schmedt C, Wengelnik K, Su AI, Honore E, Winzeler EA, Andersen KG, Patapoutian A.

Cell. 2018 Apr 5;173(2):443-455.e12. doi: 10.1016/j.cell.2018.02.047. Epub 2018 Mar 22.

15.

Exploring applications of crowdsourcing to cryo-EM.

Bruggemann J, Lander GC, Su AI.

J Struct Biol. 2018 Jul;203(1):37-45. doi: 10.1016/j.jsb.2018.02.006. Epub 2018 Feb 24.

16.

FoxO transcription factors modulate autophagy and proteoglycan 4 in cartilage homeostasis and osteoarthritis.

Matsuzaki T, Alvarez-Garcia O, Mokuda S, Nagira K, Olmer M, Gamini R, Miyata K, Akasaki Y, Su AI, Asahara H, Lotz MK.

Sci Transl Med. 2018 Feb 14;10(428). pii: eaan0746. doi: 10.1126/scitranslmed.aan0746.

17.

Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration.

Xin J, Afrasiabi C, Lelong S, Adesara J, Tsueng G, Su AI, Wu C.

BMC Bioinformatics. 2018 Feb 1;19(1):30. doi: 10.1186/s12859-018-2041-5.

18.

Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups.

Moon C, Stupp GS, Su AI, Wolan DW.

Proteomics. 2018 Feb;18(3-4). doi: 10.1002/pmic.201700391. Epub 2018 Feb 2.

19.

Gene Profiling and T Cell Receptor Sequencing from Antigen-Specific CD4 T Cells.

Holt M, Costanzo A, Gioia L, Abe B, Su AI, Teyton L.

Methods Mol Biol. 2018;1712:217-238. doi: 10.1007/978-1-4939-7514-3_14.

PMID:
29224077
20.

Academics can help shape Wikipedia.

Shafee T, Mietchen D, Su AI.

Science. 2017 Aug 11;357(6351):557-558. doi: 10.1126/science.aao0462. Epub 2017 Aug 10. No abstract available.

PMID:
28798122

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