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Items: 1 to 20 of 165

1.

Multi-omic and multi-view clustering algorithms: review and cancer benchmark.

Rappoport N, Shamir R.

Nucleic Acids Res. 2018 Oct 8. doi: 10.1093/nar/gky889. [Epub ahead of print]

PMID:
30295871
2.

GePMI: A statistical model for personal intestinal microbiome identification.

Wang Z, Lou H, Wang Y, Shamir R, Jiang R, Chen T.

NPJ Biofilms Microbiomes. 2018 Sep 4;4:20. doi: 10.1038/s41522-018-0065-2. eCollection 2018.

3.

Genomic meta-analysis of the interplay between 3D chromatin organization and gene expression programs under basal and stress conditions.

Nurick I, Shamir R, Elkon R.

Epigenetics Chromatin. 2018 Aug 29;11(1):49. doi: 10.1186/s13072-018-0220-2.

5.

2018 ISCB Overton Prize awarded to Cole Trapnell.

Fogg CN, Kovats DE, Shamir R.

PLoS Comput Biol. 2018 Jun 7;14(6):e1006163. doi: 10.1371/journal.pcbi.1006163. eCollection 2018 Jun. No abstract available.

6.

2018 ISCB Innovator Award recognizes M. Madan Babu.

Fogg CN, Kovats DE, Shamir R.

PLoS Comput Biol. 2018 Jun 7;14(6):e1006164. doi: 10.1371/journal.pcbi.1006164. eCollection 2018 Jun. No abstract available.

7.

2018 ISCB Overton Prize awarded to Cole Trapnell.

Fogg CN, Kovats DE, Shamir R.

Bioinformatics. 2018 Jul 1;34(13):2330-2331. doi: 10.1093/bioinformatics/bty360. No abstract available.

PMID:
29868884
8.

Message from the ISCB: 2018 Outstanding Contributions to ISCB Award: Russ Altman.

Fogg CN, Kovats DE, Shamir R.

Bioinformatics. 2018 Jul 1;34(13):2334-2335. doi: 10.1093/bioinformatics/bty308. No abstract available.

PMID:
29868819
9.

Message from the ISCB: 2018 ISCB Accomplishments by a Senior Scientist Award.

Fogg CN, Kovats DE, Shamir R.

Bioinformatics. 2018 Jul 1;34(13):2332-2333. doi: 10.1093/bioinformatics/bty284. No abstract available.

PMID:
29868787
10.

2018 ISCB Innovator Award recognizes M. Madan Babu.

Fogg CN, Kovats DE, Shamir R.

Bioinformatics. 2018 Jul 1;34(13):2336-2337. doi: 10.1093/bioinformatics/bty328. No abstract available.

PMID:
29868709
11.

2018 ISCB accomplishments by a senior scientist award.

Fogg CN, Kovats DE, Shamir R.

PLoS Comput Biol. 2018 May 17;14(5):e1006138. doi: 10.1371/journal.pcbi.1006138. eCollection 2018 May. No abstract available.

12.

2018 outstanding contributions to ISCB award: Russ Altman.

Fogg CN, Kovats DE, Shamir R.

PLoS Comput Biol. 2018 May 17;14(5):e1006140. doi: 10.1371/journal.pcbi.1006140. eCollection 2018 May. No abstract available.

13.

Sorting cancer karyotypes using double-cut-and-joins, duplications and deletions.

Zeira R, Shamir R.

Bioinformatics. 2018 May 3. doi: 10.1093/bioinformatics/bty381. [Epub ahead of print]

PMID:
29726899
14.

FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer-promoter map.

Hait TA, Amar D, Shamir R, Elkon R.

Genome Biol. 2018 May 1;19(1):56. doi: 10.1186/s13059-018-1432-2.

15.

MorphDB: Prioritizing Genes for Specialized Metabolism Pathways and Gene Ontology Categories in Plants.

Zwaenepoel A, Diels T, Amar D, Van Parys T, Shamir R, Van de Peer Y, Tzfadia O.

Front Plant Sci. 2018 Mar 19;9:352. doi: 10.3389/fpls.2018.00352. eCollection 2018.

16.

ADEPTUS: a discovery tool for disease prediction, enrichment and network analysis based on profiles from many diseases.

Amar D, Vizel A, Levy C, Shamir R.

Bioinformatics. 2018 Jun 1;34(11):1959-1961. doi: 10.1093/bioinformatics/bty027.

PMID:
29360930
17.

Tracing the Neural Carryover Effects of Interpersonal Anger on Resting-State fMRI in Men and Their Relation to Traumatic Stress Symptoms in a Subsample of Soldiers.

Gilam G, Maron-Katz A, Kliper E, Lin T, Fruchter E, Shamir R, Hendler T.

Front Behav Neurosci. 2017 Dec 20;11:252. doi: 10.3389/fnbeh.2017.00252. eCollection 2017.

18.

Reconstructing cancer karyotypes from short read data: the half empty and half full glass.

Eitan R, Shamir R.

BMC Bioinformatics. 2017 Nov 15;18(1):488. doi: 10.1186/s12859-017-1929-9.

19.

Faucet: streaming de novo assembly graph construction.

Rozov R, Goldshlager G, Halperin E, Shamir R.

Bioinformatics. 2018 Jan 1;34(1):147-154. doi: 10.1093/bioinformatics/btx471.

20.

Designing small universal k-mer hitting sets for improved analysis of high-throughput sequencing.

Orenstein Y, Pellow D, Marçais G, Shamir R, Kingsford C.

PLoS Comput Biol. 2017 Oct 2;13(10):e1005777. doi: 10.1371/journal.pcbi.1005777. eCollection 2017 Oct.

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