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Items: 1 to 20 of 45

1.

LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation.

Brind'Amour J, Kobayashi H, Richard Albert J, Shirane K, Sakashita A, Kamio A, Bogutz A, Koike T, Karimi MM, Lefebvre L, Kono T, Lorincz MC.

Nat Commun. 2018 Aug 20;9(1):3331. doi: 10.1038/s41467-018-05841-x.

2.

Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA).

Richard Albert J, Koike T, Younesy H, Thompson R, Bogutz AB, Karimi MM, Lorincz MC.

BMC Genomics. 2018 Jun 15;19(1):463. doi: 10.1186/s12864-018-4835-2.

3.

HP1 proteins safeguard embryonic stem cells.

Jensen KN, Lorincz MC.

Nature. 2018 May;557(7707):640-641. doi: 10.1038/d41586-018-05188-9. No abstract available.

PMID:
29805158
4.

H3S10ph broadly marks early-replicating domains in interphase ESCs and shows reciprocal antagonism with H3K9me2.

Chen CCL, Goyal P, Karimi MM, Abildgaard MH, Kimura H, Lorincz MC.

Genome Res. 2018 Jan;28(1):37-51. doi: 10.1101/gr.224717.117. Epub 2017 Dec 11.

5.

Evidence for Converging DNA Methylation Pathways in Placenta and Cancer.

Lorincz MC, Schübeler D.

Dev Cell. 2017 Nov 6;43(3):257-258. doi: 10.1016/j.devcel.2017.10.009. Review.

PMID:
29112847
6.

On the role of H3.3 in retroviral silencing.

Wolf G, Rebollo R, Karimi MM, Ewing AD, Kamada R, Wu W, Wu B, Bachu M, Ozato K, Faulkner GJ, Mager DL, Lorincz MC, Macfarlan TS.

Nature. 2017 Aug 2;548(7665):E1-E3. doi: 10.1038/nature23277. No abstract available.

PMID:
28770848
7.

Epigenetic modifier drugs trigger widespread transcription of endogenous retroviruses.

Mager DL, Lorincz MC.

Nat Genet. 2017 Jun 28;49(7):974-975. doi: 10.1038/ng.3902.

PMID:
28656984
8.

ChAsE: chromatin analysis and exploration tool.

Younesy H, Nielsen CB, Lorincz MC, Jones SJ, Karimi MM, Möller T.

Bioinformatics. 2016 Nov 1;32(21):3324-3326. Epub 2016 Jul 4.

9.

Correction: hnRNP K Coordinates Transcriptional Silencing by SETDB1 in Embryonic Stem Cells.

Thompson PJ, Dulberg V, Moon KM, Foster LJ, Chen C, Karimi MM, Lorincz MC.

PLoS Genet. 2016 Oct 14;12(10):e1006390. doi: 10.1371/journal.pgen.1006390. eCollection 2016 Oct.

10.

Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire.

Thompson PJ, Macfarlan TS, Lorincz MC.

Mol Cell. 2016 Jun 2;62(5):766-76. doi: 10.1016/j.molcel.2016.03.029. Review.

11.

Activation of Endogenous Retroviruses in Dnmt1(-/-) ESCs Involves Disruption of SETDB1-Mediated Repression by NP95 Binding to Hemimethylated DNA.

Sharif J, Endo TA, Nakayama M, Karimi MM, Shimada M, Katsuyama K, Goyal P, Brind'Amour J, Sun MA, Sun Z, Ishikura T, Mizutani-Koseki Y, Ohara O, Shinkai Y, Nakanishi M, Xie H, Lorincz MC, Koseki H.

Cell Stem Cell. 2016 Jul 7;19(1):81-94. doi: 10.1016/j.stem.2016.03.013. Epub 2016 Apr 14.

12.

Systematic identification of factors for provirus silencing in embryonic stem cells.

Yang BX, El Farran CA, Guo HC, Yu T, Fang HT, Wang HF, Schlesinger S, Seah YF, Goh GY, Neo SP, Li Y, Lorincz MC, Tergaonkar V, Lim TM, Chen L, Gunaratne J, Collins JJ, Goff SP, Daley GQ, Li H, Bard FA, Loh YH.

Cell. 2015 Sep 24;163(1):230-45. doi: 10.1016/j.cell.2015.08.037. Epub 2015 Sep 10.

13.

VisRseq: R-based visual framework for analysis of sequencing data.

Younesy H, Möller T, Lorincz MC, Karimi MM, Jones SJ.

BMC Bioinformatics. 2015;16 Suppl 11:S2. doi: 10.1186/1471-2105-16-S11-S2. Epub 2015 Aug 13.

14.

hnRNP K coordinates transcriptional silencing by SETDB1 in embryonic stem cells.

Thompson PJ, Dulberg V, Moon KM, Foster LJ, Chen C, Karimi MM, Lorincz MC.

PLoS Genet. 2015 Jan 22;11(1):e1004933. doi: 10.1371/journal.pgen.1004933. eCollection 2015 Jan. Erratum in: PLoS Genet. 2016 Oct 14;12 (10 ):e1006390.

15.

An ultra-low-input native ChIP-seq protocol for genome-wide profiling of rare cell populations.

Brind'Amour J, Liu S, Hudson M, Chen C, Karimi MM, Lorincz MC.

Nat Commun. 2015 Jan 21;6:6033. doi: 10.1038/ncomms7033.

PMID:
25607992
16.

Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells.

Wang J, Xie G, Singh M, Ghanbarian AT, Raskó T, Szvetnik A, Cai H, Besser D, Prigione A, Fuchs NV, Schumann GG, Chen W, Lorincz MC, Ivics Z, Hurst LD, Izsvák Z.

Nature. 2014 Dec 18;516(7531):405-9. doi: 10.1038/nature13804. Epub 2014 Oct 15.

PMID:
25317556
17.

Setdb1 is required for germline development and silencing of H3K9me3-marked endogenous retroviruses in primordial germ cells.

Liu S, Brind'Amour J, Karimi MM, Shirane K, Bogutz A, Lefebvre L, Sasaki H, Shinkai Y, Lorincz MC.

Genes Dev. 2014 Sep 15;28(18):2041-55. doi: 10.1101/gad.244848.114. Erratum in: Genes Dev. 2015 Jan 1;29(1):108.

18.

Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1.

Leung D, Du T, Wagner U, Xie W, Lee AY, Goyal P, Li Y, Szulwach KE, Jin P, Lorincz MC, Ren B.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6690-5. doi: 10.1073/pnas.1322273111. Epub 2014 Apr 22.

19.

ALEA: a toolbox for allele-specific epigenomics analysis.

Younesy H, Möller T, Heravi-Moussavi A, Cheng JB, Costello JF, Lorincz MC, Karimi MM, Jones SJ.

Bioinformatics. 2014 Apr 15;30(8):1172-1174. Epub 2013 Dec 26.

PMID:
24371156
20.

Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells.

Blaschke K, Ebata KT, Karimi MM, Zepeda-Martínez JA, Goyal P, Mahapatra S, Tam A, Laird DJ, Hirst M, Rao A, Lorincz MC, Ramalho-Santos M.

Nature. 2013 Aug 8;500(7461):222-6. doi: 10.1038/nature12362. Epub 2013 Jun 30.

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