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Items: 1 to 20 of 58

1.

Sequential, structural and functional properties of protein complexes are defined by how folding and binding intertwine.

Mészáros B, Dobson L, Fichó E, Tusnády GE, Dosztányi Z, Simon I.

J Mol Biol. 2019 Aug 12. pii: S0022-2836(19)30485-1. doi: 10.1016/j.jmb.2019.07.034. [Epub ahead of print]

PMID:
31415767
2.

Disentangling the complexity of low complexity proteins.

Mier P, Paladin L, Tamana S, Petrosian S, Hajdu-Soltész B, Urbanek A, Gruca A, Plewczynski D, Grynberg M, Bernadó P, Gáspári Z, Ouzounis CA, Promponas VJ, Kajava AV, Hancock JM, Tosatto SCE, Dosztanyi Z, Andrade-Navarro MA.

Brief Bioinform. 2019 Jan 30. doi: 10.1093/bib/bbz007. [Epub ahead of print]

PMID:
30698641
3.

Large-Scale Analysis of Redox-Sensitive Conditionally Disordered Protein Regions Reveals Their Widespread Nature and Key Roles in High-Level Eukaryotic Processes.

Erdős G, Mészáros B, Reichmann D, Dosztányi Z.

Proteomics. 2019 Mar;19(6):e1800070. doi: 10.1002/pmic.201800070. Epub 2019 Jan 28.

PMID:
30628183
4.

Structural Principles Governing Disease-Causing Germline Mutations.

Dobson L, Mészáros B, Tusnády GE.

J Mol Biol. 2018 Dec 7;430(24):4955-4970. doi: 10.1016/j.jmb.2018.10.005. Epub 2018 Oct 22.

5.

IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding.

Mészáros B, Erdos G, Dosztányi Z.

Nucleic Acids Res. 2018 Jul 2;46(W1):W329-W337. doi: 10.1093/nar/gky384.

6.

DIBS: a repository of disordered binding sites mediating interactions with ordered proteins.

Schad E, Fichó E, Pancsa R, Simon I, Dosztányi Z, Mészáros B.

Bioinformatics. 2018 Feb 1;34(3):535-537. doi: 10.1093/bioinformatics/btx640.

7.

Novel linear motif filtering protocol reveals the role of the LC8 dynein light chain in the Hippo pathway.

Erdős G, Szaniszló T, Pajkos M, Hajdu-Soltész B, Kiss B, Pál G, Nyitray L, Dosztányi Z.

PLoS Comput Biol. 2017 Dec 14;13(12):e1005885. doi: 10.1371/journal.pcbi.1005885. eCollection 2017 Dec.

8.

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins.

Piovesan D, Tabaro F, Paladin L, Necci M, Micetic I, Camilloni C, Davey N, Dosztányi Z, Mészáros B, Monzon AM, Parisi G, Schad E, Sormanni P, Tompa P, Vendruscolo M, Vranken WF, Tosatto SCE.

Nucleic Acids Res. 2018 Jan 4;46(D1):D471-D476. doi: 10.1093/nar/gkx1071.

9.

Prediction of protein disorder based on IUPred.

Dosztányi Z.

Protein Sci. 2018 Jan;27(1):331-340. doi: 10.1002/pro.3334. Epub 2017 Nov 16.

10.

MFIB: a repository of protein complexes with mutual folding induced by binding.

Fichó E, Reményi I, Simon I, Mészáros B.

Bioinformatics. 2017 Nov 15;33(22):3682-3684. doi: 10.1093/bioinformatics/btx486.

11.

A comprehensive assessment of long intrinsic protein disorder from the DisProt database.

Necci M, Piovesan D, Dosztányi Z, Tompa P, Tosatto SCE.

Bioinformatics. 2018 Feb 1;34(3):445-452. doi: 10.1093/bioinformatics/btx590.

PMID:
28968848
12.

MobiDB-lite: fast and highly specific consensus prediction of intrinsic disorder in proteins.

Necci M, Piovesan D, Dosztányi Z, Tosatto SCE.

Bioinformatics. 2017 May 1;33(9):1402-1404. doi: 10.1093/bioinformatics/btx015.

PMID:
28453683
13.

Simultaneous quantification of protein order and disorder.

Sormanni P, Piovesan D, Heller GT, Bonomi M, Kukic P, Camilloni C, Fuxreiter M, Dosztanyi Z, Pappu RV, Babu MM, Longhi S, Tompa P, Dunker AK, Uversky VN, Tosatto SC, Vendruscolo M.

Nat Chem Biol. 2017 Mar 22;13(4):339-342. doi: 10.1038/nchembio.2331. No abstract available.

PMID:
28328918
14.

Degrons in cancer.

Mészáros B, Kumar M, Gibson TJ, Uyar B, Dosztányi Z.

Sci Signal. 2017 Mar 14;10(470). pii: eaak9982. doi: 10.1126/scisignal.aak9982. Review.

PMID:
28292960
15.

Corrigendum: DisProt 7.0: a major update of the database of disordered proteins.

Piovesan D, Tabaro F, Mičetić I, Necci M, Quaglia F, Oldfield CJ, Aspromonte MC, Davey NE, Davidović R, Dosztányi Z, Elofsson A, Gasparini A, Hatos A, Kajava AV, Kalmar L, Leonardi E, Lazar T, Macedo-Ribeiro S, Macossay-Castillo M, Meszaros A, Minervini G, Murvai N, Pujols J, Roche DB, Salladini E, Schad E, Schramm A, Szabo B, Tantos A, Tonello F, Tsirigos KD, Veljković N, Ventura S, Vranken W, Warholm P, Uversky VN, Dunker AK, Longhi S, Tompa P, Tosatto SC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D1123-D1124. doi: 10.1093/nar/gkw1279. Epub 2016 Dec 13. No abstract available.

16.

InterPro in 2017-beyond protein family and domain annotations.

Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, Letunic I, Lopez R, Lu S, Marchler-Bauer A, Mi H, Mistry J, Natale DA, Necci M, Nuka G, Orengo CA, Park Y, Pesseat S, Piovesan D, Potter SC, Rawlings ND, Redaschi N, Richardson L, Rivoire C, Sangrador-Vegas A, Sigrist C, Sillitoe I, Smithers B, Squizzato S, Sutton G, Thanki N, Thomas PD, Tosatto SC, Wu CH, Xenarios I, Yeh LS, Young SY, Mitchell AL.

Nucleic Acids Res. 2017 Jan 4;45(D1):D190-D199. doi: 10.1093/nar/gkw1107. Epub 2016 Nov 29.

17.

DisProt 7.0: a major update of the database of disordered proteins.

Piovesan D, Tabaro F, Mičetić I, Necci M, Quaglia F, Oldfield CJ, Aspromonte MC, Davey NE, Davidović R, Dosztányi Z, Elofsson A, Gasparini A, Hatos A, Kajava AV, Kalmar L, Leonardi E, Lazar T, Macedo-Ribeiro S, Macossay-Castillo M, Meszaros A, Minervini G, Murvai N, Pujols J, Roche DB, Salladini E, Schad E, Schramm A, Szabo B, Tantos A, Tonello F, Tsirigos KD, Veljković N, Ventura S, Vranken W, Warholm P, Uversky VN, Dunker AK, Longhi S, Tompa P, Tosatto SC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D219-D227. doi: 10.1093/nar/gkw1056. Epub 2016 Nov 28. Erratum in: Nucleic Acids Res. 2017 Jan 4;45(D1):D1123-D1124.

18.

Systematic analysis of somatic mutations driving cancer: uncovering functional protein regions in disease development.

Mészáros B, Zeke A, Reményi A, Simon I, Dosztányi Z.

Biol Direct. 2016 May 5;11:23. doi: 10.1186/s13062-016-0125-6.

19.

Systematic discovery of linear binding motifs targeting an ancient protein interaction surface on MAP kinases.

Zeke A, Bastys T, Alexa A, Garai Á, Mészáros B, Kirsch K, Dosztányi Z, Kalinina OV, Reményi A.

Mol Syst Biol. 2015 Nov 3;11(11):837. doi: 10.15252/msb.20156269.

20.

Prediction and analysis of intrinsically disordered proteins.

Punta M, Simon I, Dosztányi Z.

Methods Mol Biol. 2015;1261:35-59. doi: 10.1007/978-1-4939-2230-7_3. Review.

PMID:
25502193

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