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Bioinformatics. 2007 May 1;23(9):1172-4. Epub 2007 Mar 1.

Phylogenetic exploration of bacterial genomic rearrangements.

Author information

1
Université Paul Sabatier, CNRS-LMGM, UMR 5100, Toulouse Cedex, France.

Abstract

We present a graphical tool dedicated to the exploration of bacterial genome rearrangements. The principle of this exploration relies on the reconstruction of ancestral genomes at each internal node of a gene-order-based phylogenetic tree. This tool allows the selection of internal nodes to visualize the rearrangements between the inferred chromosome of this node and its direct descendant on the tree.

AVAILABILITY:

PEGR is available at the Genopole Toulouse Bioinformatics platform.

PMID:
17332021
DOI:
10.1093/bioinformatics/btm070
[Indexed for MEDLINE]

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