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Items: 1 to 20 of 46


Replacing C189 in the bZIP domain of Zta with S, T, V, or A changes DNA binding specificity to four types of double-stranded DNA.

Ray S, Tillo D, Assad N, Ufot A, Deppmann C, Durell SR, Porollo A, Vinson C.

Biochem Biophys Res Commun. 2018 Jul 2;501(4):905-912. doi: 10.1016/j.bbrc.2018.05.080. Epub 2018 May 18.


The 14th International Workshops on Opportunistic Protists (IWOP 14).

Cushion MT, Limper AH, Porollo A, Saper VE, Sinai AP, Weiss LM.

J Eukaryot Microbiol. 2018 Nov;65(6):934-939. doi: 10.1111/jeu.12631. Epub 2018 May 25.


Ultrastructure of Highly Ordered Granules in Alveolar Type II Cells in Several Species.

Miller ML, Porollo A, Wert S.

Anat Rec (Hoboken). 2018 Mar 15. doi: 10.1002/ar.23805. [Epub ahead of print]


Congenital heart disease and aortic arch variants associated with mutation in PHOX2B.

Lombardo RC, Porollo A, Cnota JF, Hopkin RJ.

Genet Med. 2018 Dec;20(12):1538-1543. doi: 10.1038/gim.2018.34. Epub 2018 Mar 15.


Gene Expression of Pneumocystis murina after Treatment with Anidulafungin Results in Strong Signals for Sexual Reproduction, Cell Wall Integrity, and Cell Cycle Arrest, Indicating a Requirement for Ascus Formation for Proliferation.

Cushion MT, Ashbaugh A, Hendrix K, Linke MJ, Tisdale N, Sayson SG, Porollo A.

Antimicrob Agents Chemother. 2018 Apr 26;62(5). pii: e02513-17. doi: 10.1128/AAC.02513-17. Print 2018 May.


CoeViz: A Web-Based Integrative Platform for Interactive Visualization of Large Similarity and Distance Matrices.

Baker FN, Porollo A.

Data (Basel). 2018 Mar;3(1). pii: 4. doi: 10.3390/data3010004. Epub 2018 Jan 13.


The Epstein-Barr Virus B-ZIP Protein Zta Recognizes Specific DNA Sequences Containing 5-Methylcytosine and 5-Hydroxymethylcytosine.

Tillo D, Ray S, Syed KS, Gaylor MR, He X, Wang J, Assad N, Durell SR, Porollo A, Weirauch MT, Vinson C.

Biochemistry. 2017 Nov 28;56(47):6200-6210. doi: 10.1021/acs.biochem.7b00741. Epub 2017 Nov 10.


Calpain-14 and its association with eosinophilic esophagitis.

Litosh VA, Rochman M, Rymer JK, Porollo A, Kottyan LC, Rothenberg ME.

J Allergy Clin Immunol. 2017 Jun;139(6):1762-1771.e7. doi: 10.1016/j.jaci.2016.09.027. Epub 2017 Jan 25. Review.


A fast and robust protocol for metataxonomic analysis using RNAseq data.

Cox JW, Ballweg RA, Taft DH, Velayutham P, Haslam DB, Porollo A.

Microbiome. 2017 Jan 19;5(1):7. doi: 10.1186/s40168-016-0219-5.


Cadherin 26 is an alpha integrin-binding epithelial receptor regulated during allergic inflammation.

Caldwell JM, Collins MH, Kemme KA, Sherrill JD, Wen T, Rochman M, Stucke EM, Amin L, Tai H, Putnam PE, Jiménez-Dalmaroni MJ, Wormald MR, Porollo A, Abonia JP, Rothenberg ME.

Mucosal Immunol. 2017 Sep;10(5):1190-1201. doi: 10.1038/mi.2016.120. Epub 2017 Jan 4.


A Quantitative Model to Estimate Drug Resistance in Pathogens.

Baker FN, Cushion MT, Porollo A.

J Fungi (Basel). 2016 Dec;2(4). pii: 30. doi: 10.3390/jof2040030. Epub 2016 Dec 5.


Functional Characterization of Pneumocystis carinii Inositol Transporter 1.

Cushion MT, Collins MS, Sesterhenn T, Porollo A, Vadukoot AK, Merino EJ.

MBio. 2016 Dec 13;7(6). pii: e01851-16. doi: 10.1128/mBio.01851-16.


IL-4 Induces Metallothionein 3- and SLC30A4-Dependent Increase in Intracellular Zn(2+) that Promotes Pathogen Persistence in Macrophages.

Subramanian Vignesh K, Landero Figueroa JA, Porollo A, Divanovic S, Caruso JA, Deepe GS Jr.

Cell Rep. 2016 Sep 20;16(12):3232-3246. doi: 10.1016/j.celrep.2016.08.057.


CoeViz: a web-based tool for coevolution analysis of protein residues.

Baker FN, Porollo A.

BMC Bioinformatics. 2016 Mar 8;17:119. doi: 10.1186/s12859-016-0975-z.


An XRCC4 splice mutation associated with severe short stature, gonadal failure, and early-onset metabolic syndrome.

de Bruin C, Mericq V, Andrew SF, van Duyvenvoorde HA, Verkaik NS, Losekoot M, Porollo A, Garcia H, Kuang Y, Hanson D, Clayton P, van Gent DC, Wit JM, Hwa V, Dauber A.

J Clin Endocrinol Metab. 2015 May;100(5):E789-98. doi: 10.1210/jc.2015-1098. Epub 2015 Mar 5.


Phenome-wide association study (PheWAS) in EMR-linked pediatric cohorts, genetically links PLCL1 to speech language development and IL5-IL13 to Eosinophilic Esophagitis.

Namjou B, Marsolo K, Caroll RJ, Denny JC, Ritchie MD, Verma SS, Lingren T, Porollo A, Cobb BL, Perry C, Kottyan LC, Rothenberg ME, Thompson SD, Holm IA, Kohane IS, Harley JB.

Front Genet. 2014 Nov 18;5:401. doi: 10.3389/fgene.2014.00401. eCollection 2014.


Comparative genomics of pneumocystis species suggests the absence of genes for myo-inositol synthesis and reliance on inositol transport and metabolism.

Porollo A, Sesterhenn TM, Collins MS, Welge JA, Cushion MT.

MBio. 2014 Nov 4;5(6):e01834. doi: 10.1128/mBio.01834-14.


EC2KEGG: a command line tool for comparison of metabolic pathways.

Porollo A.

Source Code Biol Med. 2014 Sep 2;9:19. doi: 10.1186/1751-0473-9-19. eCollection 2014.


MutaCYP: Classification of missense mutations in human cytochromes P450.

Fechter K, Porollo A.

BMC Med Genomics. 2014 Jul 30;7:47. doi: 10.1186/1755-8794-7-47.


Zinc sequestration: arming phagocyte defense against fungal attack.

Subramanian Vignesh K, Landero Figueroa JA, Porollo A, Caruso JA, Deepe GS Jr.

PLoS Pathog. 2013;9(12):e1003815. doi: 10.1371/journal.ppat.1003815. Epub 2013 Dec 26. Review. No abstract available.

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