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Genetic Determinants and Prediction of Antibiotic Resistance Phenotypes in Helicobacter pylori.

Lauener FN, Imkamp F, Lehours P, Buissonnière A, Benejat L, Zbinden R, Keller PM, Wagner K.

J Clin Med. 2019 Jan 7;8(1). pii: E53. doi: 10.3390/jcm8010053.


Bacterial and Fungal Keratitis: A Retrospective Analysis at a University Hospital in Switzerland.

Bograd A, Seiler T, Droz S, Zimmerli S, Früh B, Tappeiner C.

Klin Monbl Augenheilkd. 2019 Jan 7. doi: 10.1055/a-0774-7756. [Epub ahead of print]


Characterisation of a porcine Escherichia coli strain from Switzerland carrying mcr-1 on a conjugative multidrug resistance IncHI2 plasmid.

Brilhante M, Donà V, Overesch G, Endimiani A, Perreten V.

J Glob Antimicrob Resist. 2018 Dec 21;16:123-124. doi: 10.1016/j.jgar.2018.12.007. [Epub ahead of print] No abstract available.


Catheter-related infections: does the spectrum of microbial causes change over time? A nationwide surveillance study.

Buetti N, Lo Priore E, Atkinson A, Widmer AF, Kronenberg A, Marschall J; Swiss Centre for Antibiotic Resistance (ANRESIS).

BMJ Open. 2018 Dec 22;8(12):e023824. doi: 10.1136/bmjopen-2018-023824.


Peptide Ligands of AmiA, AliA, and AliB Proteins Determine Pneumococcal Phenotype.

Nasher F, Aguilar F, Aebi S, Hermans PWM, Heller M, Hathaway LJ.

Front Microbiol. 2018 Dec 5;9:3013. doi: 10.3389/fmicb.2018.03013. eCollection 2018.


Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform.

Egli A, Blanc DS, Greub G, Keller PM, Lazarevic V, Lebrand A, Leib S, Neher RA, Perreten V, Ramette A, Schrenzel J, Stephan R, Wagner K, Wuethrich D, Xenarios I.

Swiss Med Wkly. 2018 Dec 15;148:w14693. doi: 10.4414/smw.2018.14693. eCollection 2018 Dec 3.


Whole-Genome Sequence of the First Extended-Spectrum β-Lactamase-Producing Strain of Salmonella enterica subsp. enterica Serovar Napoli.

Clément M, Ramette A, Bernasconi OJ, Principe L, Luzzaro F, Endimiani A.

Microbiol Resour Announc. 2018 Sep 13;7(10). pii: e00973-18. doi: 10.1128/MRA.00973-18. eCollection 2018 Sep.


Impact of participation in a surgical site infection surveillance network: results from a large international cohort study.

Abbas M, de Kraker MEA, Aghayev E, Astagneau P, Aupee M, Behnke M, Bull A, Choi HJ, de Greeff SC, Elgohari S, Gastmeier P, Harrison W, Koek MBG, Lamagni T, Limon E, Løwer HL, Lyytikäinen O, Marimuthu K, Marquess J, McCann R, Prantner I, Presterl E, Pujol M, Reilly J, Roberts C, Segagni Lusignani L, Si D, Szilágyi E, Tanguy J, Tempone S, Troillet N, Worth LJ, Pittet D, Harbarth S.

J Hosp Infect. 2018 Dec 7. pii: S0195-6701(18)30680-7. doi: 10.1016/j.jhin.2018.12.003. [Epub ahead of print]


Nasal microbiota and symptom persistence in acute respiratory tract infections in infants.

Neumann RP, Hilty M, Xu B, Usemann J, Korten I, Mika M, Müller L, Latzin P, Frey U.

ERJ Open Res. 2018 Dec 3;4(4). pii: 00066-2018. doi: 10.1183/23120541.00066-2018. eCollection 2018 Oct.


Antimicrobial resistance prediction and phylogenetic analysis of Neisseria gonorrhoeae isolates using the Oxford Nanopore MinION sequencer.

Golparian D, Donà V, Sánchez-Busó L, Foerster S, Harris S, Endimiani A, Low N, Unemo M.

Sci Rep. 2018 Dec 4;8(1):17596. doi: 10.1038/s41598-018-35750-4.


Fatal bronchopneumonia caused by skunk adenovirus 1 in an African pygmy hedgehog.

Needle DB, Selig MK, Jackson KA, Delwart E, Tighe E, Leib SL, Seuberlich T, Pesavento PA.

J Vet Diagn Invest. 2018 Nov 26:1040638718812123. doi: 10.1177/1040638718812123. [Epub ahead of print]


The Role of Rifampin against Staphylococcal Biofilm Infections in Vitro, in Animal Models, and in Orthopedic Device-Related Infections.

Zimmerli W, Sendi P.

Antimicrob Agents Chemother. 2018 Nov 19. pii: AAC.01746-18. doi: 10.1128/AAC.01746-18. [Epub ahead of print] Review.


Attributable deaths and disability-adjusted life-years caused by infections with antibiotic-resistant bacteria in Switzerland.

Gasser M, Zingg W, Cassini A, Kronenberg A; Swiss Centre for Antibiotic Resistance.

Lancet Infect Dis. 2019 Jan;19(1):17-18. doi: 10.1016/S1473-3099(18)30708-4. Epub 2018 Nov 15. No abstract available. Erratum in: Lancet Infect Dis. 2019 Jan;19(1):e1.


Holobiont suture zones: Parasite evidence across the European house mouse hybrid zone.

Goüy de Bellocq J, Wasimuddin, Ribas A, Bryja J, Piálek J, Baird SJE.

Mol Ecol. 2018 Dec;27(24):5214-5227. doi: 10.1111/mec.14938. Epub 2018 Dec 10.


Limited Correlation of Shotgun Metagenomics Following Host Depletion and Routine Diagnostics for Viruses and Bacteria in Low Concentrated Surrogate and Clinical Samples.

Oechslin CP, Lenz N, Liechti N, Ryter S, Agyeman P, Bruggmann R, Leib SL, Beuret CM.

Front Cell Infect Microbiol. 2018 Oct 23;8:375. doi: 10.3389/fcimb.2018.00375. eCollection 2018.


Effective chemical virus inactivation of patient serum compatible with accurate serodiagnosis of infections.

Remy MM, Alfter M, Chiem MN, Barbani MT, Engler OB, Suter-Riniker F.

Clin Microbiol Infect. 2018 Oct 28. pii: S1198-743X(18)30721-3. doi: 10.1016/j.cmi.2018.10.016. [Epub ahead of print]


Gut microbiota dynamics in travelers returning from India colonized with extended-spectrum cephalosporin-resistant Enterobacteriaceae: A longitudinal study.

Pires J, Kraemer JG, Kuenzli E, Kasraian S, Tinguely R, Hatz C, Endimiani A, Hilty M.

Travel Med Infect Dis. 2018 Oct 17. pii: S1477-8939(18)30367-3. doi: 10.1016/j.tmaid.2018.10.012. [Epub ahead of print]


Host switching pathogens, infectious outbreaks and zoonosis: A Marie Skłodowska-Curie innovative training network (HONOURs).

van der Hoek L, Verschoor E, Beer M, Höper D, Wernike K, Van Ranst M, Matthijnssens J, Maes P, Sastre P, Rueda P, Drexler JF, Barr J, Edwards T, Millner P, Vermeij P, de Groof A, Thiel V, Dijkman R, Suter-Riniker F, Leib S, Koller R, Ramette A, Engler O, Beuret C.

Virus Res. 2018 Sep 15;257:120-124. doi: 10.1016/j.virusres.2018.09.002.


The Simple 10-Item Predicting Asthma Risk in Children Tool to Predict Childhood Asthma-An External Validation.

Pedersen ESL, Spycher BD, de Jong CCM, Halbeisen F, Ramette A, Gaillard EA, Granell R, Henderson AJ, Kuehni CE.

J Allergy Clin Immunol Pract. 2018 Oct 9. pii: S2213-2198(18)30609-3. doi: 10.1016/j.jaip.2018.09.032. [Epub ahead of print]


Inverse cationic ITP for separation of methadone enantiomers with sulfated β-cyclodextrin as chiral selector.

Mikkonen S, Caslavska J, Gebauer P, Thormann W.

Electrophoresis. 2018 Oct 12. doi: 10.1002/elps.201800387. [Epub ahead of print]


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