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Items: 7

1.

Quantifying environmental adaptation of metabolic pathways in metagenomics.

Gianoulis TA, Raes J, Patel PV, Bjornson R, Korbel JO, Letunic I, Yamada T, Paccanaro A, Jensen LJ, Snyder M, Bork P, Gerstein MB.

Proc Natl Acad Sci U S A. 2009 Feb 3;106(5):1374-9. doi: 10.1073/pnas.0808022106. Epub 2009 Jan 22.

2.

Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions.

Zhang ZD, Paccanaro A, Fu Y, Weissman S, Weng Z, Chang J, Snyder M, Gerstein MB.

Genome Res. 2007 Jun;17(6):787-97.

3.

Integration of curated databases to identify genotype-phenotype associations.

Goh CS, Gianoulis TA, Liu Y, Li J, Paccanaro A, Lussier YA, Gerstein M.

BMC Genomics. 2006 Oct 12;7:257.

4.

Predicting essential genes in fungal genomes.

Seringhaus M, Paccanaro A, Borneman A, Snyder M, Gerstein M.

Genome Res. 2006 Sep;16(9):1126-35. Epub 2006 Aug 9.

5.

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.

Krogan NJ, Cagney G, Yu H, Zhong G, Guo X, Ignatchenko A, Li J, Pu S, Datta N, Tikuisis AP, Punna T, Peregrín-Alvarez JM, Shales M, Zhang X, Davey M, Robinson MD, Paccanaro A, Bray JE, Sheung A, Beattie B, Richards DP, Canadien V, Lalev A, Mena F, Wong P, Starostine A, Canete MM, Vlasblom J, Wu S, Orsi C, Collins SR, Chandran S, Haw R, Rilstone JJ, Gandi K, Thompson NJ, Musso G, St Onge P, Ghanny S, Lam MH, Butland G, Altaf-Ul AM, Kanaya S, Shilatifard A, O'Shea E, Weissman JS, Ingles CJ, Hughes TR, Parkinson J, Gerstein M, Wodak SJ, Emili A, Greenblatt JF.

Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22.

PMID:
16554755
6.

Predicting interactions in protein networks by completing defective cliques.

Yu H, Paccanaro A, Trifonov V, Gerstein M.

Bioinformatics. 2006 Apr 1;22(7):823-9. Epub 2006 Feb 2.

PMID:
16455753
7.

Assessing the limits of genomic data integration for predicting protein networks.

Lu LJ, Xia Y, Paccanaro A, Yu H, Gerstein M.

Genome Res. 2005 Jul;15(7):945-53.

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