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Items: 23

1.

Structuring supplemental materials in support of reproducibility.

Greenbaum D, Rozowsky J, Stodden V, Gerstein M.

Genome Biol. 2017 Apr 5;18(1):64. doi: 10.1186/s13059-017-1205-3.

2.

Genomics and privacy: implications of the new reality of closed data for the field.

Greenbaum D, Sboner A, Mu XJ, Gerstein M.

PLoS Comput Biol. 2011 Dec;7(12):e1002278. doi: 10.1371/journal.pcbi.1002278. Epub 2011 Dec 1. Review.

3.

The role of cloud computing in managing the deluge of potentially private genetic data.

Greenbaum D, Gerstein M.

Am J Bioeth. 2011 Nov;11(11):39-41. doi: 10.1080/15265161.2011.608242. No abstract available.

PMID:
22047125
4.

The real cost of sequencing: higher than you think!

Sboner A, Mu XJ, Greenbaum D, Auerbach RK, Gerstein MB.

Genome Biol. 2011 Aug 25;12(8):125. doi: 10.1186/gb-2011-12-8-125.

5.

Social considerations in research: consider them but don't use them.

Greenbaum D, Gerstein M.

Am J Bioeth. 2011 May;11(5):31-2. doi: 10.1080/15265161.2011.562598. No abstract available.

PMID:
21534147
6.

Social networking and personal genomics: suggestions for optimizing the interaction.

Greenbaum D, Gerstein M.

Am J Bioeth. 2009;9(6-7):15-9. doi: 10.1080/15265160902894039. No abstract available.

PMID:
19998104
7.

Genomic anonymity: have we already lost it?

Greenbaum D, Du J, Gerstein M.

Am J Bioeth. 2008 Oct;8(10):71-4. doi: 10.1080/15265160802478560. No abstract available.

PMID:
19003717
8.

An interdepartmental Ph.D. program in computational biology and bioinformatics: the Yale perspective.

Gerstein M, Greenbaum D, Cheung K, Miller PL.

J Biomed Inform. 2007 Feb;40(1):73-9. Epub 2006 Mar 6. Review.

9.

Network security and data integrity in academia: an assessment and a proposal for large-scale archiving.

Smith A, Greenbaum D, Douglas SM, Long M, Gerstein M.

Genome Biol. 2005;6(9):119. Epub 2005 Aug 30.

10.

Impediments to database interoperation: legal issues and security concerns.

Greenbaum D, Smith A, Gerstein M.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D3-4. No abstract available.

11.

Analyzing cellular biochemistry in terms of molecular networks.

Xia Y, Yu H, Jansen R, Seringhaus M, Baxter S, Greenbaum D, Zhao H, Gerstein M.

Annu Rev Biochem. 2004;73:1051-87. Review.

PMID:
15189167
12.

Computer security in academia-a potential roadblock to distributed annotation of the human genome.

Greenbaum D, Douglas SM, Smith A, Lim J, Fischer M, Schultz M, Gerstein M.

Nat Biotechnol. 2004 Jun;22(6):771-2. No abstract available.

PMID:
15175700
13.

Genomic analysis of essentiality within protein networks.

Yu H, Greenbaum D, Xin Lu H, Zhu X, Gerstein M.

Trends Genet. 2004 Jun;20(6):227-31. Review. Erratum in: Trends Genet. 2005 Jan;21(1):36.

PMID:
15145574
14.

TopNet: a tool for comparing biological sub-networks, correlating protein properties with topological statistics.

Yu H, Zhu X, Greenbaum D, Karro J, Gerstein M.

Nucleic Acids Res. 2004 Jan 14;32(1):328-37. Print 2004.

15.

Bridging structural biology and genomics: assessing protein interaction data with known complexes.

Edwards AM, Kus B, Jansen R, Greenbaum D, Greenblatt J, Gerstein M.

Drug Discov Today. 2004 Jan 15;9(2 Suppl):S32-40. Review.

PMID:
23573642
16.

A Bayesian networks approach for predicting protein-protein interactions from genomic data.

Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M.

Science. 2003 Oct 17;302(5644):449-53.

17.

Comparing protein abundance and mRNA expression levels on a genomic scale.

Greenbaum D, Colangelo C, Williams K, Gerstein M.

Genome Biol. 2003;4(9):117. Epub 2003 Aug 29. Review.

18.

A universal legal framework as a prerequisite for database interoperability.

Greenbaum D, Gerstein M.

Nat Biotechnol. 2003 Sep;21(9):979-82. No abstract available.

PMID:
12949555
19.

Genomic and proteomic analysis of the myeloid differentiation program: global analysis of gene expression during induced differentiation in the MPRO cell line.

Lian Z, Kluger Y, Greenbaum DS, Tuck D, Gerstein M, Berliner N, Weissman SM, Newburger PE.

Blood. 2002 Nov 1;100(9):3209-20.

PMID:
12384419
20.

Bridging structural biology and genomics: assessing protein interaction data with known complexes.

Edwards AM, Kus B, Jansen R, Greenbaum D, Greenblatt J, Gerstein M.

Trends Genet. 2002 Oct;18(10):529-36. Review.

PMID:
12350343
22.

Structural genomics analysis: characteristics of atypical, common, and horizontally transferred folds.

Hegyi H, Lin J, Greenbaum D, Gerstein M.

Proteins. 2002 May 1;47(2):126-41.

PMID:
11933060
23.

Relating whole-genome expression data with protein-protein interactions.

Jansen R, Greenbaum D, Gerstein M.

Genome Res. 2002 Jan;12(1):37-46.

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