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Animal Functional Magnetic Resonance Imaging: Trends and Path Toward Standardization.

Mandino F, Cerri DH, Garin CM, Straathof M, van Tilborg GAF, Chakravarty MM, Dhenain M, Dijkhuizen RM, Gozzi A, Hess A, Keilholz SD, Lerch JP, Shih YI, Grandjean J.

Front Neuroinform. 2020 Jan 22;13:78. doi: 10.3389/fninf.2019.00078. eCollection 2019. Review.


Considerations for resting state functional MRI and functional connectivity studies in rodents.

Pan WJ, Billings JC, Grooms JK, Shakil S, Keilholz SD.

Front Neurosci. 2015 Aug 5;9:269. doi: 10.3389/fnins.2015.00269. eCollection 2015. Review.


Resting-State Functional Connectivity in the Infant Brain: Methods, Pitfalls, and Potentiality.

Mongerson CRL, Jennings RW, Borsook D, Becerra L, Bajic D.

Front Pediatr. 2017 Aug 14;5:159. doi: 10.3389/fped.2017.00159. eCollection 2017.


Resting state fMRI: A review on methods in resting state connectivity analysis and resting state networks.

Smitha KA, Akhil Raja K, Arun KM, Rajesh PG, Thomas B, Kapilamoorthy TR, Kesavadas C.

Neuroradiol J. 2017 Aug;30(4):305-317. doi: 10.1177/1971400917697342. Epub 2017 Mar 29. Review.


How restful is it with all that noise? Comparison of Interleaved silent steady state (ISSS) and conventional imaging in resting-state fMRI.

Andoh J, Ferreira M, Leppert IR, Matsushita R, Pike B, Zatorre RJ.

Neuroimage. 2017 Feb 15;147:726-735. doi: 10.1016/j.neuroimage.2016.11.065. Epub 2016 Nov 27.


DPABI: Data Processing & Analysis for (Resting-State) Brain Imaging.

Yan CG, Wang XD, Zuo XN, Zang YF.

Neuroinformatics. 2016 Jul;14(3):339-51. doi: 10.1007/s12021-016-9299-4.


Exploring the brain network: a review on resting-state fMRI functional connectivity.

van den Heuvel MP, Hulshoff Pol HE.

Eur Neuropsychopharmacol. 2010 Aug;20(8):519-34. doi: 10.1016/j.euroneuro.2010.03.008. Epub 2010 May 14. Review.


Standardizing the intrinsic brain: towards robust measurement of inter-individual variation in 1000 functional connectomes.

Yan CG, Craddock RC, Zuo XN, Zang YF, Milham MP.

Neuroimage. 2013 Oct 15;80:246-62. doi: 10.1016/j.neuroimage.2013.04.081. Epub 2013 Apr 28.


High frequency functional brain networks in neonates revealed by rapid acquisition resting state fMRI.

Smith-Collins AP, Luyt K, Heep A, Kauppinen RA.

Hum Brain Mapp. 2015 Jul;36(7):2483-94. doi: 10.1002/hbm.22786. Epub 2015 Mar 18.


Resting state functional magnetic resonance imaging in Parkinson's disease.

Prodoehl J, Burciu RG, Vaillancourt DE.

Curr Neurol Neurosci Rep. 2014 Jun;14(6):448. doi: 10.1007/s11910-014-0448-6. Review.


Mouse optical imaging for understanding resting-state functional connectivity in human fMRI.

Matsui T, Murakami T, Ohki K.

Commun Integr Biol. 2018 Oct 21;11(4):e1528821. doi: 10.1080/19420889.2018.1528821. eCollection 2018. Review.


Establishing the resting state default mode network derived from functional magnetic resonance imaging tasks as an endophenotype: A twins study.

Korgaonkar MS, Ram K, Williams LM, Gatt JM, Grieve SM.

Hum Brain Mapp. 2014 Aug;35(8):3893-902. doi: 10.1002/hbm.22446. Epub 2014 Jan 22.


Integrated radiofrequency array and animal holder design for minimizing head motion during awake marmoset functional magnetic resonance imaging.

Schaeffer DJ, Gilbert KM, Hori Y, Gati JS, Menon RS, Everling S.

Neuroimage. 2019 Jun;193:126-138. doi: 10.1016/j.neuroimage.2019.03.023. Epub 2019 Mar 15.


Resting-state functional MRI studies on infant brains: A decade of gap-filling efforts.

Zhang H, Shen D, Lin W.

Neuroimage. 2019 Jan 15;185:664-684. doi: 10.1016/j.neuroimage.2018.07.004. Epub 2018 Jul 7. Review.


Predicting individual brain functional connectivity using a Bayesian hierarchical model.

Dai T, Guo Y; Alzheimer's Disease Neuroimaging Initiative.

Neuroimage. 2017 Feb 15;147:772-787. doi: 10.1016/j.neuroimage.2016.11.048. Epub 2016 Dec 1.


Combined rTMS/fMRI Studies: An Overlooked Resource in Animal Models.

Seewoo BJ, Etherington SJ, Feindel KW, Rodger J.

Front Neurosci. 2018 Mar 23;12:180. doi: 10.3389/fnins.2018.00180. eCollection 2018. Review.


Correlating Resting-State Functional Magnetic Resonance Imaging Connectivity by Independent Component Analysis-Based Epileptogenic Zones with Intracranial Electroencephalogram Localized Seizure Onset Zones and Surgical Outcomes in Prospective Pediatric Intractable Epilepsy Study.

Boerwinkle VL, Mohanty D, Foldes ST, Guffey D, Minard CG, Vedantam A, Raskin JS, Lam S, Bond M, Mirea L, Adelson PD, Wilfong AA, Curry DJ.

Brain Connect. 2017 Sep;7(7):424-442. doi: 10.1089/brain.2016.0479.


Correlation between resting state fMRI total neuronal activity and PET metabolism in healthy controls and patients with disorders of consciousness.

Soddu A, Gómez F, Heine L, Di Perri C, Bahri MA, Voss HU, Bruno MA, Vanhaudenhuyse A, Phillips C, Demertzi A, Chatelle C, Schrouff J, Thibaut A, Charland-Verville V, Noirhomme Q, Salmon E, Tshibanda JF, Schiff ND, Laureys S.

Brain Behav. 2015 Dec 29;6(1):e00424. doi: 10.1002/brb3.424. eCollection 2016 Jan.


Structural Basis of Large-Scale Functional Connectivity in the Mouse.

Grandjean J, Zerbi V, Balsters JH, Wenderoth N, Rudin M.

J Neurosci. 2017 Aug 23;37(34):8092-8101. doi: 10.1523/JNEUROSCI.0438-17.2017. Epub 2017 Jul 17.

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