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Items: 1 to 20 of 100

1.

Charge-based interactions of antimicrobial peptides and general drugs with lipid bilayers.

Ashrafuzzaman M, Tseng CY, Tuszynski JA.

J Mol Graph Model. 2020 Mar;95:107502. doi: 10.1016/j.jmgm.2019.107502. Epub 2019 Nov 27.

PMID:
31805474
2.

Regulation of channel function due to physical energetic coupling with a lipid bilayer.

Ashrafuzzaman M, Tseng CY, Tuszynski JA.

Biochem Biophys Res Commun. 2014 Mar 7;445(2):463-8. doi: 10.1016/j.bbrc.2014.02.012. Epub 2014 Feb 12.

3.

Ion pore formation in lipid bilayers and related energetic considerations.

Ashrafuzzaman M, Tuszynski J.

Curr Med Chem. 2012;19(11):1619-34. Review.

PMID:
22376036
4.

Chemotherapy drugs form ion pores in membranes due to physical interactions with lipids.

Ashrafuzzaman M, Tseng CY, Duszyk M, Tuszynski JA.

Chem Biol Drug Des. 2012 Dec;80(6):992-1002. doi: 10.1111/cbdd.12060.

PMID:
23006796
5.

The importance of membrane defects-lessons from simulations.

Bennett WF, Tieleman DP.

Acc Chem Res. 2014 Aug 19;47(8):2244-51. doi: 10.1021/ar4002729. Epub 2014 Jun 3.

PMID:
24892900
6.

Dataset on interactions of membrane active agents with lipid bilayers.

Ashrafuzzaman M, Tseng CY, Tuszynski JA.

Data Brief. 2020 Jan 16;29:105138. doi: 10.1016/j.dib.2020.105138. eCollection 2020 Apr.

7.

Coupling molecular dynamics simulations with experiments for the rational design of indolicidin-analogous antimicrobial peptides.

Tsai CW, Hsu NY, Wang CH, Lu CY, Chang Y, Tsai HH, Ruaan RC.

J Mol Biol. 2009 Sep 25;392(3):837-54. doi: 10.1016/j.jmb.2009.06.071. Epub 2009 Jul 2.

PMID:
19576903
8.

Effects of truncating van der Waals interactions in lipid bilayer simulations.

Huang K, GarcĂ­a AE.

J Chem Phys. 2014 Sep 14;141(10):105101. doi: 10.1063/1.4893965.

9.

Antimicrobial Peptide Simulations and the Influence of Force Field on the Free Energy for Pore Formation in Lipid Bilayers.

Bennett WF, Hong CK, Wang Y, Tieleman DP.

J Chem Theory Comput. 2016 Sep 13;12(9):4524-33. doi: 10.1021/acs.jctc.6b00265. Epub 2016 Aug 30.

PMID:
27529120
10.

Molecular Dynamics Simulations Are Redefining Our View of Peptides Interacting with Biological Membranes.

Ulmschneider JP, Ulmschneider MB.

Acc Chem Res. 2018 May 15;51(5):1106-1116. doi: 10.1021/acs.accounts.7b00613. Epub 2018 Apr 18.

PMID:
29667836
11.

Anisotropic solvent model of the lipid bilayer. 2. Energetics of insertion of small molecules, peptides, and proteins in membranes.

Lomize AL, Pogozheva ID, Mosberg HI.

J Chem Inf Model. 2011 Apr 25;51(4):930-46. doi: 10.1021/ci200020k. Epub 2011 Mar 25.

12.

A coarse-grained approach to studying the interactions of the antimicrobial peptides aurein 1.2 and maculatin 1.1 with POPG/POPE lipid mixtures.

Balatti GE, Martini MF, Pickholz M.

J Mol Model. 2018 Jul 17;24(8):208. doi: 10.1007/s00894-018-3747-z.

PMID:
30019106
13.

Membrane interaction of antimicrobial peptides using E. coli lipid extract as model bacterial cell membranes and SFG spectroscopy.

Soblosky L, Ramamoorthy A, Chen Z.

Chem Phys Lipids. 2015 Apr;187:20-33. doi: 10.1016/j.chemphyslip.2015.02.003. Epub 2015 Feb 20.

14.

Polydim-I antimicrobial activity against MDR bacteria and its model membrane interaction.

Rangel M, Castro FFDS, Mota-Lima LD, Clissa PB, Martins DB, Cabrera MPDS, Mortari MR.

PLoS One. 2017 Jun 1;12(6):e0178785. doi: 10.1371/journal.pone.0178785. eCollection 2017.

15.

Elementary Processes and Mechanisms of Interactions of Antimicrobial Peptides with Membranes-Single Giant Unilamellar Vesicle Studies.

Hasan M, Yamazaki M.

Adv Exp Med Biol. 2019;1117:17-32. doi: 10.1007/978-981-13-3588-4_3. Review.

PMID:
30980351
16.

Molecular dynamics simulations of a DMPC bilayer using nonadditive interaction models.

Davis JE, Rahaman O, Patel S.

Biophys J. 2009 Jan;96(2):385-402. doi: 10.1016/j.bpj.2008.09.048.

17.
18.

Single-Molecule Resolution of Antimicrobial Peptide Interactions with Supported Lipid A Bilayers.

Nelson N, Schwartz DK.

Biophys J. 2018 Jun 5;114(11):2606-2616. doi: 10.1016/j.bpj.2018.04.019.

19.

Antimicrobial protegrin-1 forms ion channels: molecular dynamic simulation, atomic force microscopy, and electrical conductance studies.

Capone R, Mustata M, Jang H, Arce FT, Nussinov R, Lal R.

Biophys J. 2010 Jun 2;98(11):2644-52. doi: 10.1016/j.bpj.2010.02.024.

20.

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