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Metagenomic Profiling of Microbial Pathogens in the Little Bighorn River, Montana.

Hamner S, Brown BL, Hasan NA, Franklin MJ, Doyle J, Eggers MJ, Colwell RR, Ford TE.

Int J Environ Res Public Health. 2019 Mar 27;16(7). pii: E1097. doi: 10.3390/ijerph16071097.


Detection and source tracking of Escherichia coli, harboring intimin and Shiga toxin genes, isolated from the Little Bighorn River, Montana.

Hamner S, Broadaway SC, Berg E, Stettner S, Pyle BH, Big Man N, Old Elk J, Eggers MJ, Doyle J, Kindness L, Good Luck B, Ford TE, Camper AC.

Int J Environ Health Res. 2014 Aug;24(4):341-62. doi: 10.1080/09603123.2013.835030. Epub 2013 Sep 17.


Whole-Genome Enrichment Provides Deep Insights into Vibrio cholerae Metagenome from an African River.

Vezzulli L, Grande C, Tassistro G, Brettar I, Höfle MG, Pereira RP, Mushi D, Pallavicini A, Vassallo P, Pruzzo C.

Microb Ecol. 2017 Apr;73(3):734-738. doi: 10.1007/s00248-016-0902-x. Epub 2016 Nov 25.


Occurrence, molecular characterization and antibiogram of water quality indicator bacteria in river water serving a water treatment plant.

Okeke BC, Thomson MS, Moss EM.

Sci Total Environ. 2011 Nov 1;409(23):4979-85. doi: 10.1016/j.scitotenv.2011.07.029. Epub 2011 Sep 14.


Antibiotic resistance and virulence genes in coliform water isolates.

Stange C, Sidhu JPS, Tiehm A, Toze S.

Int J Hyg Environ Health. 2016 Nov;219(8):823-831. doi: 10.1016/j.ijheh.2016.07.015. Epub 2016 Jul 26.


Elucidating Waterborne Pathogen Presence and Aiding Source Apportionment in an Impaired Stream.

Weidhaas J, Anderson A, Jamal R.

Appl Environ Microbiol. 2018 Mar 1;84(6). pii: e02510-17. doi: 10.1128/AEM.02510-17. Print 2018 Mar 15.


Detection of virulence-associated genes characteristic of intestinal Escherichia coli pathotypes, including the enterohemorrhagic/enteroaggregative O104:H4, in bovines from Germany and Spain.

Cabal A, Geue L, Gómez-Barrero S, Barth S, Bárcena C, Hamm K, Porrero MC, Valverde A, Cantón R, Menge C, Gortázar C, Domínguez L, Álvarez J.

Microbiol Immunol. 2015 Aug;59(8):433-42. doi: 10.1111/1348-0421.12275.


Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes.

Amos GC, Zhang L, Hawkey PM, Gaze WH, Wellington EM.

Vet Microbiol. 2014 Jul 16;171(3-4):441-7. doi: 10.1016/j.vetmic.2014.02.017. Epub 2014 Feb 16.


Investigating the virulence genes and antibiotic susceptibility patterns of Vibrio cholerae O1 in environmental and clinical isolates in Accra, Ghana.

Abana D, Gyamfi E, Dogbe M, Opoku G, Opare D, Boateng G, Mosi L.

BMC Infect Dis. 2019 Jan 21;19(1):76. doi: 10.1186/s12879-019-3714-z.


Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices.

Sanderson ND, Street TL, Foster D, Swann J, Atkins BL, Brent AJ, McNally MA, Oakley S, Taylor A, Peto TEA, Crook DW, Eyre DW.

BMC Genomics. 2018 Sep 27;19(1):714. doi: 10.1186/s12864-018-5094-y.


Comparative genomics for non-O1/O139 Vibrio cholerae isolates recovered from the Yangtze River Estuary versus V. cholerae representative isolates from serogroup O1.

Gong L, Yu P, Zheng H, Gu W, He W, Tang Y, Wang Y, Dong Y, Peng X, She Q, Xie L, Chen L.

Mol Genet Genomics. 2019 Apr;294(2):417-430. doi: 10.1007/s00438-018-1514-6. Epub 2018 Nov 28.


Occurrence of diarrhoeagenic Escherichia coli virulence genes in water and bed sediments of a river used by communities in Gauteng, South Africa.

Abia AL, Ubomba-Jaswa E, Momba MN.

Environ Sci Pollut Res Int. 2016 Aug;23(15):15665-74. doi: 10.1007/s11356-016-6762-6. Epub 2016 May 2.


Occurrence of virulence and antimicrobial resistance genes in Escherichia coli isolates from different aquatic ecosystems within the St. Clair River and Detroit River areas.

Hamelin K, Bruant G, El-Shaarawi A, Hill S, Edge TA, Fairbrother J, Harel J, Maynard C, Masson L, Brousseau R.

Appl Environ Microbiol. 2007 Jan;73(2):477-84. Epub 2006 Nov 3.


A Metagenomic Approach to Evaluating Surface Water Quality in Haiti.

Roy MA, Arnaud JM, Jasmin PM, Hamner S, Hasan NA, Colwell RR, Ford TE.

Int J Environ Res Public Health. 2018 Oct 10;15(10). pii: E2211. doi: 10.3390/ijerph15102211.


Escherichia coli O104:H4 Pathogenesis: an Enteroaggregative E. coli/Shiga Toxin-Producing E. coli Explosive Cocktail of High Virulence.

Navarro-Garcia F.

Microbiol Spectr. 2014 Dec;2(6). doi: 10.1128/microbiolspec.EHEC-0008-2013. Review.


Detection of quinolone-resistant Escherichia coli isolates belonging to clonal groups O25b:H4-B2-ST131 and O25b:H4-D-ST69 in raw sewage and river water in Barcelona, Spain.

Colomer-Lluch M, Mora A, López C, Mamani R, Dahbi G, Marzoa J, Herrera A, Viso S, Blanco JE, Blanco M, Alonso MP, Jofre J, Muniesa M, Blanco J.

J Antimicrob Chemother. 2013 Apr;68(4):758-65. doi: 10.1093/jac/dks477. Epub 2012 Dec 7.


Characterization of Pathogenic Escherichia coli in River Water by Simultaneous Detection and Sequencing of 14 Virulence Genes.

Gomi R, Matsuda T, Fujimori Y, Harada H, Matsui Y, Yoneda M.

Environ Sci Technol. 2015 Jun 2;49(11):6800-7. doi: 10.1021/acs.est.5b00953. Epub 2015 May 13.


Microbiological quality of water from the rivers of Curitiba, Paraná State, Brazil, and the susceptibility to antimicrobial drugs and pathogenicity of Escherichia coli.

Giowanella M, Bozza A, do Rocio Dalzoto P, Dionísio JA, Andraus S, Guimarães EL, Pimentel IC.

Environ Monit Assess. 2015 Nov;187(11):673. doi: 10.1007/s10661-015-4896-5. Epub 2015 Oct 6.


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