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Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis.

Shakiba E, Edwards JD, Jodari F, Duke SE, Baldo AM, Korniliev P, McCouch SR, Eizenga GC.

PLoS One. 2017 Mar 10;12(3):e0172133. doi: 10.1371/journal.pone.0172133. eCollection 2017.


Genetic analysis of cold tolerance at the germination and booting stages in rice by association mapping.

Pan Y, Zhang H, Zhang D, Li J, Xiong H, Yu J, Li J, Rashid MA, Li G, Ma X, Cao G, Han L, Li Z.

PLoS One. 2015 Mar 19;10(3):e0120590. doi: 10.1371/journal.pone.0120590. eCollection 2015.


Identification and analysis of QTLs controlling cold tolerance at the reproductive stage and validation of effective QTLs in cold-tolerant genotypes of rice (Oryza sativa L.).

Suh JP, Jeung JU, Lee JI, Choi YH, Yea JD, Virk PS, Mackill DJ, Jena KK.

Theor Appl Genet. 2010 Mar;120(5):985-95. doi: 10.1007/s00122-009-1226-8. Epub 2009 Dec 10.


Genetic architecture of aluminum tolerance in rice (Oryza sativa) determined through genome-wide association analysis and QTL mapping.

Famoso AN, Zhao K, Clark RT, Tung CW, Wright MH, Bustamante C, Kochian LV, McCouch SR.

PLoS Genet. 2011 Aug;7(8):e1002221. doi: 10.1371/journal.pgen.1002221. Epub 2011 Aug 4.


Genome-wide Association Mapping of Cold Tolerance Genes at the Seedling Stage in Rice.

Wang D, Liu J, Li C, Kang H, Wang Y, Tan X, Liu M, Deng Y, Wang Z, Liu Y, Zhang D, Xiao Y, Wang GL.

Rice (N Y). 2016 Dec;9(1):61. doi: 10.1186/s12284-016-0133-2. Epub 2016 Nov 15.


QTL mapping and development of candidate gene-derived DNA markers associated with seedling cold tolerance in rice (Oryza sativa L.).

Kim SM, Suh JP, Lee CK, Lee JH, Kim YG, Jena KK.

Mol Genet Genomics. 2014 Jun;289(3):333-43. doi: 10.1007/s00438-014-0813-9. Epub 2014 Jan 24.


Genome-wide association mapping of salinity tolerance in rice (Oryza sativa).

Kumar V, Singh A, Mithra SV, Krishnamurthy SL, Parida SK, Jain S, Tiwari KK, Kumar P, Rao AR, Sharma SK, Khurana JP, Singh NK, Mohapatra T.

DNA Res. 2015 Apr;22(2):133-45. doi: 10.1093/dnares/dsu046. Epub 2015 Jan 27.


Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background.

Zhang F, Huang L, Wang W, Zhao X, Zhu L, Fu B, Li Z.

BMC Genomics. 2012 Sep 7;13:461. doi: 10.1186/1471-2164-13-461.


Mapping QTLs for traits related to salinity tolerance at seedling stage of rice (Oryza sativa L.): an agrigenomics study of an Iranian rice population.

Ghomi K, Rabiei B, Sabouri H, Sabouri A.

OMICS. 2013 May;17(5):242-51. doi: 10.1089/omi.2012.0097.


Genome wide association analysis of cold tolerance at germination in temperate japonica rice (Oryza sativa L.) varieties.

Sales E, Viruel J, Domingo C, Marqués L.

PLoS One. 2017 Aug 17;12(8):e0183416. doi: 10.1371/journal.pone.0183416. eCollection 2017.


Fine mapping of qRC10-2, a quantitative trait locus for cold tolerance of rice roots at seedling and mature stages.

Xiao N, Huang WN, Zhang XX, Gao Y, Li AH, Dai Y, Yu L, Liu GQ, Pan CH, Li YH, Dai ZY, Chen JM.

PLoS One. 2014 May 1;9(5):e96046. doi: 10.1371/journal.pone.0096046. eCollection 2014.


Quantitative trait loci analysis for rice seed vigor during the germination stage.

Wang ZF, Wang JF, Bao YM, Wang FH, Zhang HS.

J Zhejiang Univ Sci B. 2010 Dec;11(12):958-64. doi: 10.1631/jzus.B1000238.


Identification and fine mapping of a major quantitative trait locus originating from wild rice, controlling cold tolerance at the seedling stage.

Koseki M, Kitazawa N, Yonebayashi S, Maehara Y, Wang ZX, Minobe Y.

Mol Genet Genomics. 2010 Jul;284(1):45-54. doi: 10.1007/s00438-010-0548-1. Epub 2010 Jun 5.


Genome-wide association study of salt tolerance at the seed germination stage in rice.

Shi Y, Gao L, Wu Z, Zhang X, Wang M, Zhang C, Zhang F, Zhou Y, Li Z.

BMC Plant Biol. 2017 May 30;17(1):92. doi: 10.1186/s12870-017-1044-0.


QTL analysis of novel genomic regions associated with yield and yield related traits in new plant type based recombinant inbred lines of rice (Oryza sativa L.).

Marathi B, Guleria S, Mohapatra T, Parsad R, Mariappan N, Kurungara VK, Atwal SS, Prabhu KV, Singh NK, Singh AK.

BMC Plant Biol. 2012 Aug 9;12:137. doi: 10.1186/1471-2229-12-137.


New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.

Lv Y, Guo Z, Li X, Ye H, Li X, Xiong L.

Plant Cell Environ. 2016 Mar;39(3):556-70. doi: 10.1111/pce.12635. Epub 2015 Nov 14.


Biallelic and Genome Wide Association Mapping of Germanium Tolerant Loci in Rice (Oryza sativa L.).

Talukdar P, Douglas A, Price AH, Norton GJ.

PLoS One. 2015 Sep 10;10(9):e0137577. doi: 10.1371/journal.pone.0137577. eCollection 2015.


Association mapping of germinability and seedling vigor in sorghum under controlled low-temperature conditions.

Upadhyaya HD, Wang YH, Sastry DV, Dwivedi SL, Prasad PV, Burrell AM, Klein RR, Morris GP, Klein PE.

Genome. 2016 Feb;59(2):137-45. doi: 10.1139/gen-2015-0122. Epub 2015 Nov 24.


Combining mapping of physiological quantitative trait loci and transcriptome for cold tolerance for counteracting male sterility induced by low temperatures during reproductive stage in rice.

Shimono H, Abe A, Aoki N, Koumoto T, Sato M, Yokoi S, Kuroda E, Endo T, Saeki KI, Nagano K.

Physiol Plant. 2016 Jun;157(2):175-92. doi: 10.1111/ppl.12410. Epub 2016 Mar 18.


Genome wide association mapping for grain shape traits in indica rice.

Feng Y, Lu Q, Zhai R, Zhang M, Xu Q, Yang Y, Wang S, Yuan X, Yu H, Wang Y, Wei X.

Planta. 2016 Oct;244(4):819-30. doi: 10.1007/s00425-016-2548-9. Epub 2016 May 19.

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