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Items: 1 to 20 of 110

1.

Quantifying Allosteric Communication via Both Concerted Structural Changes and Conformational Disorder with CARDS.

Singh S, Bowman GR.

J Chem Theory Comput. 2017 Apr 11;13(4):1509-1517. doi: 10.1021/acs.jctc.6b01181. Epub 2017 Mar 22.

2.

The Role of Protein-Ligand Contacts in Allosteric Regulation of the Escherichia coli Catabolite Activator Protein.

Townsend PD, Rodgers TL, Glover LC, Korhonen HJ, Richards SA, Colwell LJ, Pohl E, Wilson MR, Hodgson DR, McLeish TC, Cann MJ.

J Biol Chem. 2015 Sep 4;290(36):22225-35. doi: 10.1074/jbc.M115.669267. Epub 2015 Jul 16.

3.

Dynamic activation of an allosteric regulatory protein.

Tzeng SR, Kalodimos CG.

Nature. 2009 Nov 19;462(7271):368-72. doi: 10.1038/nature08560.

PMID:
19924217
4.

Understanding cAMP-dependent allostery by NMR spectroscopy: comparative analysis of the EPAC1 cAMP-binding domain in its apo and cAMP-bound states.

Mazhab-Jafari MT, Das R, Fotheringham SA, SilDas S, Chowdhury S, Melacini G.

J Am Chem Soc. 2007 Nov 21;129(46):14482-92. Epub 2007 Oct 31.

PMID:
17973384
5.

Structural basis for cAMP-mediated allosteric control of the catabolite activator protein.

Popovych N, Tzeng SR, Tonelli M, Ebright RH, Kalodimos CG.

Proc Natl Acad Sci U S A. 2009 Apr 28;106(17):6927-32. doi: 10.1073/pnas.0900595106. Epub 2009 Apr 9.

6.

A computational investigation of allostery in the catabolite activator protein.

Li L, Uversky VN, Dunker AK, Meroueh SO.

J Am Chem Soc. 2007 Dec 19;129(50):15668-76. Epub 2007 Nov 28.

PMID:
18041838
7.

Asymmetric configurations in a reengineered homodimer reveal multiple subunit communication pathways in protein allostery.

Lanfranco MF, Gárate F, Engdahl AJ, Maillard RA.

J Biol Chem. 2017 Apr 14;292(15):6086-6093. doi: 10.1074/jbc.M117.776047. Epub 2017 Feb 10.

8.

Modeling the cAMP-induced allosteric transition using the crystal structure of CAP-cAMP at 2.1 A resolution.

Passner JM, Schultz SC, Steitz TA.

J Mol Biol. 2000 Dec 15;304(5):847-59.

PMID:
11124031
9.

Allosteric pathway identification through network analysis: from molecular dynamics simulations to interactive 2D and 3D graphs.

Allain A, Chauvot de Beauchêne I, Langenfeld F, Guarracino Y, Laine E, Tchertanov L.

Faraday Discuss. 2014;169:303-21. doi: 10.1039/c4fd00024b. Epub 2014 May 30.

PMID:
25340971
10.

Dynamic Allostery of the Catabolite Activator Protein Revealed by Interatomic Forces.

Louet M, Seifert C, Hensen U, Gräter F.

PLoS Comput Biol. 2015 Aug 5;11(8):e1004358. doi: 10.1371/journal.pcbi.1004358. eCollection 2015 Aug.

11.

Time-resolved observation of protein allosteric communication.

Buchenberg S, Sittel F, Stock G.

Proc Natl Acad Sci U S A. 2017 Aug 15;114(33):E6804-E6811. doi: 10.1073/pnas.1707694114. Epub 2017 Jul 31.

12.

Unidirectional allostery in the regulatory subunit RIα facilitates efficient deactivation of protein kinase A.

Guo C, Zhou HX.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):E6776-E6785. Epub 2016 Oct 17.

13.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
14.

Allosteric switch regulates protein-protein binding through collective motion.

Smith CA, Ban D, Pratihar S, Giller K, Paulat M, Becker S, Griesinger C, Lee D, de Groot BL.

Proc Natl Acad Sci U S A. 2016 Mar 22;113(12):3269-74. doi: 10.1073/pnas.1519609113. Epub 2016 Mar 9.

15.

Modulation of global low-frequency motions underlies allosteric regulation: demonstration in CRP/FNR family transcription factors.

Rodgers TL, Townsend PD, Burnell D, Jones ML, Richards SA, McLeish TC, Pohl E, Wilson MR, Cann MJ.

PLoS Biol. 2013 Sep;11(9):e1001651. doi: 10.1371/journal.pbio.1001651. Epub 2013 Sep 10.

16.

A Chemical Perspective on Allostery.

Ribeiro AA, Ortiz V.

Chem Rev. 2016 Jun 8;116(11):6488-502. doi: 10.1021/acs.chemrev.5b00543. Epub 2016 Jan 7. Review.

PMID:
26741913
17.

Long Distance Modulation of Disorder-to-Order Transitions in Protein Allostery.

Wang J, Custer G, Beckett D, Matysiak S.

Biochemistry. 2017 Aug 29;56(34):4478-4488. doi: 10.1021/acs.biochem.7b00496. Epub 2017 Aug 14.

PMID:
28718281
18.

Allosteric communication between cAMP binding sites in the RI subunit of protein kinase A revealed by NMR.

Byeon IJ, Dao KK, Jung J, Keen J, Leiros I, Døskeland SO, Martinez A, Gronenborn AM.

J Biol Chem. 2010 Apr 30;285(18):14062-70. doi: 10.1074/jbc.M110.106666. Epub 2010 Mar 2.

19.

The Role of Protein Loops and Linkers in Conformational Dynamics and Allostery.

Papaleo E, Saladino G, Lambrughi M, Lindorff-Larsen K, Gervasio FL, Nussinov R.

Chem Rev. 2016 Jun 8;116(11):6391-423. doi: 10.1021/acs.chemrev.5b00623. Epub 2016 Feb 18. Review.

PMID:
26889708
20.

Mapping allostery through the covariance analysis of NMR chemical shifts.

Selvaratnam R, Chowdhury S, VanSchouwen B, Melacini G.

Proc Natl Acad Sci U S A. 2011 Apr 12;108(15):6133-8. doi: 10.1073/pnas.1017311108. Epub 2011 Mar 28.

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