Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 90

1.

BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome.

Huisman SMH, van Lew B, Mahfouz A, Pezzotti N, Höllt T, Michielsen L, Vilanova A, Reinders MJT, Lelieveldt BPF.

Nucleic Acids Res. 2017 Jun 2;45(10):e83. doi: 10.1093/nar/gkx046.

2.

Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings.

Mahfouz A, van de Giessen M, van der Maaten L, Huisman S, Reinders M, Hawrylycz MJ, Lelieveldt BP.

Methods. 2015 Feb;73:79-89. doi: 10.1016/j.ymeth.2014.10.004. Epub 2014 Oct 16.

3.

Spatio-temporal transcriptome of the human brain.

Kang HJ, Kawasawa YI, Cheng F, Zhu Y, Xu X, Li M, Sousa AM, Pletikos M, Meyer KA, Sedmak G, Guennel T, Shin Y, Johnson MB, Krsnik Z, Mayer S, Fertuzinhos S, Umlauf S, Lisgo SN, Vortmeyer A, Weinberger DR, Mane S, Hyde TM, Huttner A, Reimers M, Kleinman JE, Sestan N.

Nature. 2011 Oct 26;478(7370):483-9. doi: 10.1038/nature10523.

4.

Shared Pathways Among Autism Candidate Genes Determined by Co-expression Network Analysis of the Developing Human Brain Transcriptome.

Mahfouz A, Ziats MN, Rennert OM, Lelieveldt BP, Reinders MJ.

J Mol Neurosci. 2015 Dec;57(4):580-94. doi: 10.1007/s12031-015-0641-3. Epub 2015 Sep 23.

5.

Sex Biased Gene Expression Profiling of Human Brains at Major Developmental Stages.

Shi L, Zhang Z, Su B.

Sci Rep. 2016 Feb 16;6:21181. doi: 10.1038/srep21181.

6.

An integrative analysis of regional gene expression profiles in the human brain.

Myers EM, Bartlett CW, Machiraju R, Bohland JW.

Methods. 2015 Feb;73:54-70. doi: 10.1016/j.ymeth.2014.12.010. Epub 2014 Dec 15.

PMID:
25524419
7.

Analysing the developing brain transcriptome with the GenePaint platform.

Alvarez-Bolado G, Eichele G.

J Physiol. 2006 Sep 1;575(Pt 2):347-52. Epub 2006 Jul 6. Review.

8.

Down Syndrome Developmental Brain Transcriptome Reveals Defective Oligodendrocyte Differentiation and Myelination.

Olmos-Serrano JL, Kang HJ, Tyler WA, Silbereis JC, Cheng F, Zhu Y, Pletikos M, Jankovic-Rapan L, Cramer NP, Galdzicki Z, Goodliffe J, Peters A, Sethares C, Delalle I, Golden JA, Haydar TF, Sestan N.

Neuron. 2016 Mar 16;89(6):1208-1222. doi: 10.1016/j.neuron.2016.01.042. Epub 2016 Feb 25.

9.

A conserved BDNF, glutamate- and GABA-enriched gene module related to human depression identified by coexpression meta-analysis and DNA variant genome-wide association studies.

Chang LC, Jamain S, Lin CW, Rujescu D, Tseng GC, Sibille E.

PLoS One. 2014 Mar 7;9(3):e90980. doi: 10.1371/journal.pone.0090980. eCollection 2014.

10.

Transcriptional landscape of the prenatal human brain.

Miller JA, Ding SL, Sunkin SM, Smith KA, Ng L, Szafer A, Ebbert A, Riley ZL, Royall JJ, Aiona K, Arnold JM, Bennet C, Bertagnolli D, Brouner K, Butler S, Caldejon S, Carey A, Cuhaciyan C, Dalley RA, Dee N, Dolbeare TA, Facer BA, Feng D, Fliss TP, Gee G, Goldy J, Gourley L, Gregor BW, Gu G, Howard RE, Jochim JM, Kuan CL, Lau C, Lee CK, Lee F, Lemon TA, Lesnar P, McMurray B, Mastan N, Mosqueda N, Naluai-Cecchini T, Ngo NK, Nyhus J, Oldre A, Olson E, Parente J, Parker PD, Parry SE, Stevens A, Pletikos M, Reding M, Roll K, Sandman D, Sarreal M, Shapouri S, Shapovalova NV, Shen EH, Sjoquist N, Slaughterbeck CR, Smith M, Sodt AJ, Williams D, Zöllei L, Fischl B, Gerstein MB, Geschwind DH, Glass IA, Hawrylycz MJ, Hevner RF, Huang H, Jones AR, Knowles JA, Levitt P, Phillips JW, Sestan N, Wohnoutka P, Dang C, Bernard A, Hohmann JG, Lein ES.

Nature. 2014 Apr 10;508(7495):199-206. doi: 10.1038/nature13185. Epub 2014 Apr 2.

11.

On Expression Patterns and Developmental Origin of Human Brain Regions.

Kirsch L, Chechik G.

PLoS Comput Biol. 2016 Aug 26;12(8):e1005064. doi: 10.1371/journal.pcbi.1005064. eCollection 2016 Aug.

12.

Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops.

Mochida K, Uehara-Yamaguchi Y, Yoshida T, Sakurai T, Shinozaki K.

Plant Cell Physiol. 2011 May;52(5):785-803. doi: 10.1093/pcp/pcr035. Epub 2011 Mar 24.

13.

Predicting distinct organization of transcription factor binding sites on the promoter regions: a new genome-based approach to expand human embryonic stem cell regulatory network.

Hosseinpour B, Bakhtiarizadeh MR, Khosravi P, Ebrahimie E.

Gene. 2013 Dec 1;531(2):212-9. doi: 10.1016/j.gene.2013.09.011. Epub 2013 Sep 13.

PMID:
24042128
14.

Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system.

Sunkin SM, Ng L, Lau C, Dolbeare T, Gilbert TL, Thompson CL, Hawrylycz M, Dang C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D996-D1008. doi: 10.1093/nar/gks1042. Epub 2012 Nov 28.

15.

Genetic diversity and striatal gene networks: focus on the heterogeneous stock-collaborative cross (HS-CC) mouse.

Iancu OD, Darakjian P, Walter NA, Malmanger B, Oberbeck D, Belknap J, McWeeney S, Hitzemann R.

BMC Genomics. 2010 Oct 19;11:585. doi: 10.1186/1471-2164-11-585.

16.

CbGRiTS: cerebellar gene regulation in time and space.

Ha T, Swanson D, Larouche M, Glenn R, Weeden D, Zhang P, Hamre K, Langston M, Phillips C, Song M, Ouyang Z, Chesler E, Duvvurru S, Yordanova R, Cui Y, Campbell K, Ricker G, Phillips C, Homayouni R, Goldowitz D.

Dev Biol. 2015 Jan 1;397(1):18-30. doi: 10.1016/j.ydbio.2014.09.032. Epub 2014 Oct 23.

17.

Discovering functional modules across diverse maize transcriptomes using COB, the Co-expression Browser.

Schaefer RJ, Briskine R, Springer NM, Myers CL.

PLoS One. 2014 Jun 12;9(6):e99193. doi: 10.1371/journal.pone.0099193. eCollection 2014. Erratum in: PLoS One. 2015;10(3):e0120222.

18.

An anatomically comprehensive atlas of the adult human brain transcriptome.

Hawrylycz MJ, Lein ES, Guillozet-Bongaarts AL, Shen EH, Ng L, Miller JA, van de Lagemaat LN, Smith KA, Ebbert A, Riley ZL, Abajian C, Beckmann CF, Bernard A, Bertagnolli D, Boe AF, Cartagena PM, Chakravarty MM, Chapin M, Chong J, Dalley RA, David Daly B, Dang C, Datta S, Dee N, Dolbeare TA, Faber V, Feng D, Fowler DR, Goldy J, Gregor BW, Haradon Z, Haynor DR, Hohmann JG, Horvath S, Howard RE, Jeromin A, Jochim JM, Kinnunen M, Lau C, Lazarz ET, Lee C, Lemon TA, Li L, Li Y, Morris JA, Overly CC, Parker PD, Parry SE, Reding M, Royall JJ, Schulkin J, Sequeira PA, Slaughterbeck CR, Smith SC, Sodt AJ, Sunkin SM, Swanson BE, Vawter MP, Williams D, Wohnoutka P, Zielke HR, Geschwind DH, Hof PR, Smith SM, Koch C, Grant SGN, Jones AR.

Nature. 2012 Sep 20;489(7416):391-399. doi: 10.1038/nature11405.

19.

VTCdb: a gene co-expression database for the crop species Vitis vinifera (grapevine).

Wong DC, Sweetman C, Drew DP, Ford CM.

BMC Genomics. 2013 Dec 16;14:882. doi: 10.1186/1471-2164-14-882.

20.

Brain transcriptome atlases: a computational perspective.

Mahfouz A, Huisman SMH, Lelieveldt BPF, Reinders MJT.

Brain Struct Funct. 2017 May;222(4):1557-1580. doi: 10.1007/s00429-016-1338-2. Epub 2016 Dec 1. Review.

Supplemental Content

Support Center