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Items: 8

1.

Connections between alternative transcription and alternative splicing in mammals.

Shabalina SA, Spiridonov AN, Spiridonov NA, Koonin EV.

Genome Biol Evol. 2010;2:791-9. doi: 10.1093/gbe/evq058. Epub 2010 Oct 1.

2.

Optimization of duplex stability and terminal asymmetry for shRNA design.

Matveeva OV, Kang Y, Spiridonov AN, Saetrom P, Nemtsov VA, Ogurtsov AY, Nechipurenko YD, Shabalina SA.

PLoS One. 2010 Apr 20;5(4):e10180. doi: 10.1371/journal.pone.0010180.

3.

Distinct patterns of expression and evolution of intronless and intron-containing mammalian genes.

Shabalina SA, Ogurtsov AY, Spiridonov AN, Novichkov PS, Spiridonov NA, Koonin EV.

Mol Biol Evol. 2010 Aug;27(8):1745-9. doi: 10.1093/molbev/msq086. Epub 2010 Apr 1.

4.

Low enzymatic activity haplotypes of the human catechol-O-methyltransferase gene: enrichment for marker SNPs.

Nackley AG, Shabalina SA, Lambert JE, Conrad MS, Gibson DG, Spiridonov AN, Satterfield SK, Diatchenko L.

PLoS One. 2009;4(4):e5237. doi: 10.1371/journal.pone.0005237. Epub 2009 Apr 13.

5.

Computational models with thermodynamic and composition features improve siRNA design.

Shabalina SA, Spiridonov AN, Ogurtsov AY.

BMC Bioinformatics. 2006 Feb 12;7:65.

6.

Congruent evolution of different classes of non-coding DNA in prokaryotic genomes.

Rogozin IB, Makarova KS, Natale DA, Spiridonov AN, Tatusov RL, Wolf YI, Yin J, Koonin EV.

Nucleic Acids Res. 2002 Oct 1;30(19):4264-71.

7.

Purifying and directional selection in overlapping prokaryotic genes.

Rogozin IB, Spiridonov AN, Sorokin AV, Wolf YI, Jordan IK, Tatusov RL, Koonin EV.

Trends Genet. 2002 May;18(5):228-32.

PMID:
12047938
8.

Identification of sequence motifs in oligonucleotides whose presence is correlated with antisense activity.

Matveeva OV, Tsodikov AD, Giddings M, Freier SM, Wyatt JR, Spiridonov AN, Shabalina SA, Gesteland RF, Atkins JF.

Nucleic Acids Res. 2000 Aug 1;28(15):2862-5.

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