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Items: 1 to 20 of 46

1.

Analyses of mRNA structure dynamics identify embryonic gene regulatory programs.

Beaudoin JD, Novoa EM, Vejnar CE, Yartseva V, Takacs CM, Kellis M, Giraldez AJ.

Nat Struct Mol Biol. 2018 Aug;25(8):677-686. doi: 10.1038/s41594-018-0091-z. Epub 2018 Jul 30.

PMID:
30061596
2.

RES complex is associated with intron definition and required for zebrafish early embryogenesis.

Fernandez JP, Moreno-Mateos MA, Gohr A, Miao L, Chan SH, Irimia M, Giraldez AJ.

PLoS Genet. 2018 Jul 3;14(7):e1007473. doi: 10.1371/journal.pgen.1007473. eCollection 2018 Jul.

3.

Optimized CRISPR-Cpf1 system for genome editing in zebrafish.

Fernandez JP, Vejnar CE, Giraldez AJ, Rouet R, Moreno-Mateos MA.

Methods. 2018 Nov 1;150:11-18. doi: 10.1016/j.ymeth.2018.06.014. Epub 2018 Jun 28.

PMID:
29964176
4.

Corrigendum: Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification.

Reischauer S, Stone OA, Villasenor A, Chi N, Jin SW, Martin M, Lee MT, Fukuda N, Marass M, Witty A, Fiddes I, Kuo T, Chung WS, Salek S, Lerrigo R, Alsiƶ J, Luo S, Tworus D, Augustine SM, Mucenieks S, Nystedt B, Giraldez AJ, Schroth GP, Andersson O, Stainier DYR.

Nature. 2018 Mar 21;555(7697):543. doi: 10.1038/nature25991.

PMID:
29565360
5.

Erratum: Author Correction: Successful amplification of DNA aboard the International Space Station.

Boguraev AS, Christensen HC, Bonneau AR, Pezza JA, Nichols NM, Giraldez AJ, Gray MM, Wagner BM, Aken JT, Foley KD, Copeland DS, Kraves S, Saavedra EA.

NPJ Microgravity. 2018 Jan 10;4:2. doi: 10.1038/s41526-017-0035-7. eCollection 2018.

6.

CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing.

Moreno-Mateos MA, Fernandez JP, Rouet R, Vejnar CE, Lane MA, Mis E, Khokha MK, Doudna JA, Giraldez AJ.

Nat Commun. 2017 Dec 8;8(1):2024. doi: 10.1038/s41467-017-01836-2.

7.

Successful amplification of DNA aboard the International Space Station.

Boguraev AS, Christensen HC, Bonneau AR, Pezza JA, Nichols NM, Giraldez AJ, Gray MM, Wagner BM, Aken JT, Foley KD, Copeland DS, Kraves S, Alvarez Saavedra E.

NPJ Microgravity. 2017 Nov 16;3:26. doi: 10.1038/s41526-017-0033-9. eCollection 2017. Erratum in: NPJ Microgravity. 2018 Jan 10;4:2.

8.

RESA identifies mRNA-regulatory sequences at high resolution.

Yartseva V, Takacs CM, Vejnar CE, Lee MT, Giraldez AJ.

Nat Methods. 2017 Feb;14(2):201-207. doi: 10.1038/nmeth.4121. Epub 2016 Dec 26.

9.

Optimization Strategies for the CRISPR-Cas9 Genome-Editing System.

Vejnar CE, Moreno-Mateos MA, Cifuentes D, Bazzini AA, Giraldez AJ.

Cold Spring Harb Protoc. 2016 Oct 3;2016(10). doi: 10.1101/pdb.top090894. Review.

PMID:
27698246
10.

Optimized CRISPR-Cas9 System for Genome Editing in Zebrafish.

Vejnar CE, Moreno-Mateos MA, Cifuentes D, Bazzini AA, Giraldez AJ.

Cold Spring Harb Protoc. 2016 Oct 3;2016(10). doi: 10.1101/pdb.prot086850.

PMID:
27698232
11.

Codon identity regulates mRNA stability and translation efficiency during the maternal-to-zygotic transition.

Bazzini AA, Del Viso F, Moreno-Mateos MA, Johnstone TG, Vejnar CE, Qin Y, Yao J, Khokha MK, Giraldez AJ.

EMBO J. 2016 Oct 4;35(19):2087-2103. Epub 2016 Jul 19.

12.

Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification.

Reischauer S, Stone OA, Villasenor A, Chi N, Jin SW, Martin M, Lee MT, Fukuda N, Marass M, Witty A, Fiddes I, Kuo T, Chung WS, Salek S, Lerrigo R, Alsiƶ J, Luo S, Tworus D, Augustine SM, Mucenieks S, Nystedt B, Giraldez AJ, Schroth GP, Andersson O, Stainier DY.

Nature. 2016 Jul 14;535(7611):294-8. doi: 10.1038/nature18614. Erratum in: Nature. 2018 Mar 21;555(7697):543.

PMID:
27411634
13.

Upstream ORFs are prevalent translational repressors in vertebrates.

Johnstone TG, Bazzini AA, Giraldez AJ.

EMBO J. 2016 Apr 1;35(7):706-23. doi: 10.15252/embj.201592759. Epub 2016 Feb 19.

14.

Estrogens Suppress a Behavioral Phenotype in Zebrafish Mutants of the Autism Risk Gene, CNTNAP2.

Hoffman EJ, Turner KJ, Fernandez JM, Cifuentes D, Ghosh M, Ijaz S, Jain RA, Kubo F, Bill BR, Baier H, Granato M, Barresi MJ, Wilson SW, Rihel J, State MW, Giraldez AJ.

Neuron. 2016 Feb 17;89(4):725-33. doi: 10.1016/j.neuron.2015.12.039. Epub 2016 Jan 28.

15.

miR-430 regulates oriented cell division during neural tube development in zebrafish.

Takacs CM, Giraldez AJ.

Dev Biol. 2016 Jan 15;409(2):442-50. doi: 10.1016/j.ydbio.2015.11.016. Epub 2015 Nov 30.

16.

The Maternal-to-Zygotic Transition During Vertebrate Development: A Model for Reprogramming.

Yartseva V, Giraldez AJ.

Curr Top Dev Biol. 2015;113:191-232. doi: 10.1016/bs.ctdb.2015.07.020. Epub 2015 Aug 13. Review.

17.

CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo.

Moreno-Mateos MA, Vejnar CE, Beaudoin JD, Fernandez JP, Mis EK, Khokha MK, Giraldez AJ.

Nat Methods. 2015 Oct;12(10):982-8. doi: 10.1038/nmeth.3543. Epub 2015 Aug 31.

18.

Adenylation of maternally inherited microRNAs by Wispy.

Lee M, Choi Y, Kim K, Jin H, Lim J, Nguyen TA, Yang J, Jeong M, Giraldez AJ, Yang H, Patel DJ, Kim VN.

Mol Cell. 2014 Dec 4;56(5):696-707. doi: 10.1016/j.molcel.2014.10.011. Epub 2014 Nov 13.

19.

Zygotic genome activation during the maternal-to-zygotic transition.

Lee MT, Bonneau AR, Giraldez AJ.

Annu Rev Cell Dev Biol. 2014;30:581-613. doi: 10.1146/annurev-cellbio-100913-013027. Epub 2014 Aug 11. Review.

20.

Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

Bazzini AA, Johnstone TG, Christiano R, Mackowiak SD, Obermayer B, Fleming ES, Vejnar CE, Lee MT, Rajewsky N, Walther TC, Giraldez AJ.

EMBO J. 2014 May 2;33(9):981-93. doi: 10.1002/embj.201488411. Epub 2014 Apr 4.

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