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Items: 1 to 20 of 64

1.

Interview with Prof. Ramy K. Aziz, Cairo University. The Dawn of Pharmacomicrobiomics.

Aziz RK.

OMICS. 2018 Apr;22(4):295-297. doi: 10.1089/omi.2018.0041. No abstract available.

PMID:
29652572
2.

Quercetin 3-O-glucoside recovered from the wild Egyptian Sahara plant, Euphorbia paralias L., inhibits glutamine synthetase and has antimycobacterial activity.

Safwat NA, Kashef MT, Aziz RK, Amer KF, Ramadan MA.

Tuberculosis (Edinb). 2018 Jan;108:106-113. doi: 10.1016/j.tube.2017.11.005. Epub 2017 Nov 16.

PMID:
29523309
3.

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.

Adriaenssens EM, Wittmann J, Kuhn JH, Turner D, Sullivan MB, Dutilh BE, Jang HB, van Zyl LJ, Klumpp J, Lobocka M, Moreno Switt AI, Rumnieks J, Edwards RA, Uchiyama J, Alfenas-Zerbini P, Petty NK, Kropinski AM, Barylski J, Gillis A, Clokie MRC, Prangishvili D, Lavigne R, Aziz RK, Duffy S, Krupovic M, Poranen MM, Knezevic P, Enault F, Tong Y, Oksanen HM, Rodney Brister J.

Arch Virol. 2018 Apr;163(4):1125-1129. doi: 10.1007/s00705-018-3723-z. Epub 2018 Jan 22. No abstract available.

PMID:
29356990
4.

Kullback Leibler divergence in complete bacterial and phage genomes.

Akhter S, Aziz RK, Kashef MT, Ibrahim ES, Bailey B, Edwards RA.

PeerJ. 2017 Nov 30;5:e4026. doi: 10.7717/peerj.4026. eCollection 2017.

5.

Phage Genome Annotation Using the RAST Pipeline.

McNair K, Aziz RK, Pusch GD, Overbeek R, Dutilh BE, Edwards R.

Methods Mol Biol. 2018;1681:231-238. doi: 10.1007/978-1-4939-7343-9_17.

PMID:
29134599
6.

Essential Steps in Characterizing Bacteriophages: Biology, Taxonomy, and Genome Analysis.

Aziz RK, Ackermann HW, Petty NK, Kropinski AM.

Methods Mol Biol. 2018;1681:197-215. doi: 10.1007/978-1-4939-7343-9_15.

PMID:
29134597
7.

PATRIC as a unique resource for studying antimicrobial resistance.

Antonopoulos DA, Assaf R, Aziz RK, Brettin T, Bun C, Conrad N, Davis JJ, Dietrich EM, Disz T, Gerdes S, Kenyon RW, Machi D, Mao C, Murphy-Olson DE, Nordberg EK, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Santerre J, Shukla M, Stevens RL, VanOeffelen M, Vonstein V, Warren AS, Wattam AR, Xia F, Yoo H.

Brief Bioinform. 2017 Jul 31. doi: 10.1093/bib/bbx083. [Epub ahead of print]

PMID:
28968762
8.

Toward the Drug Factory Microbiome: Microbial Community Variations in Antibiotic-Producing Clean Rooms.

Hamdy AM, El-Massry M, Kashef MT, Amin MA, Aziz RK.

OMICS. 2018 Feb;22(2):133-144. doi: 10.1089/omi.2017.0091. Epub 2017 Sep 5.

PMID:
28873001
9.

Biofilm formation in enterococci: genotype-phenotype correlations and inhibition by vancomycin.

Hashem YA, Amin HM, Essam TM, Yassin AS, Aziz RK.

Sci Rep. 2017 Jul 18;7(1):5733. doi: 10.1038/s41598-017-05901-0.

10.

The aldehyde dehydrogenase, AldA, is essential for L-1,2-propanediol utilization in laboratory-evolved Escherichia coli.

Aziz RK, Monk JM, Andrews KA, Nhan J, Khaw VL, Wong H, Palsson BO, Charusanti P.

Microbiol Res. 2017 Jan;194:47-52. doi: 10.1016/j.micres.2016.10.006. Epub 2016 Nov 4.

11.

Insertion sequences enrichment in extreme Red sea brine pool vent.

Elbehery AH, Aziz RK, Siam R.

Extremophiles. 2017 Mar;21(2):271-282. doi: 10.1007/s00792-016-0900-4. Epub 2016 Dec 3.

PMID:
27915389
12.

Gut microbiome alterations in patients with stage 4 hepatitis C.

Aly AM, Adel A, El-Gendy AO, Essam TM, Aziz RK.

Gut Pathog. 2016 Sep 13;8(1):42. doi: 10.1186/s13099-016-0124-2. eCollection 2016.

13.

Viruses-to-mobile genetic elements skew in the deep Atlantis II brine pool sediments.

Adel M, Elbehery AH, Aziz SK, Aziz RK, Grossart HP, Siam R.

Sci Rep. 2016 Sep 6;6:32704. doi: 10.1038/srep32704.

14.

Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity.

Bosi E, Monk JM, Aziz RK, Fondi M, Nizet V, Palsson BØ.

Proc Natl Acad Sci U S A. 2016 Jun 28;113(26):E3801-9. doi: 10.1073/pnas.1523199113. Epub 2016 Jun 10.

15.

Antibiotic Resistome: Improving Detection and Quantification Accuracy for Comparative Metagenomics.

Elbehery AH, Aziz RK, Siam R.

OMICS. 2016 Apr;20(4):229-38. doi: 10.1089/omi.2015.0191. Epub 2016 Mar 31.

PMID:
27031878
16.

Systems biology-guided identification of synthetic lethal gene pairs and its potential use to discover antibiotic combinations.

Aziz RK, Monk JM, Lewis RM, In Loh S, Mishra A, Abhay Nagle A, Satyanarayana C, Dhakshinamoorthy S, Luche M, Kitchen DB, Andrews KA, Fong NL, Li HJ, Palsson BO, Charusanti P.

Sci Rep. 2015 Nov 4;5:16025. doi: 10.1038/srep16025.

17.

Model-driven discovery of synergistic inhibitors against E. coli and S. enterica serovar Typhimurium targeting a novel synthetic lethal pair, aldA and prpC.

Aziz RK, Khaw VL, Monk JM, Brunk E, Lewis R, Loh SI, Mishra A, Nagle AA, Satyanarayana C, Dhakshinamoorthy S, Luche M, Kitchen DB, Andrews KA, Palsson BØ, Charusanti P.

Front Microbiol. 2015 Sep 23;6:958. doi: 10.3389/fmicb.2015.00958. eCollection 2015.

18.

Contaminated water as a source of Helicobacter pylori infection: A review.

Aziz RK, Khalifa MM, Sharaf RR.

J Adv Res. 2015 Jul;6(4):539-47. doi: 10.1016/j.jare.2013.07.007. Epub 2013 Jul 21. Review.

19.

Multidimensional metrics for estimating phage abundance, distribution, gene density, and sequence coverage in metagenomes.

Aziz RK, Dwivedi B, Akhter S, Breitbart M, Edwards RA.

Front Microbiol. 2015 May 8;6:381. doi: 10.3389/fmicb.2015.00381. eCollection 2015.

20.

Mutual exclusivity of hyaluronan and hyaluronidase in invasive group A Streptococcus.

Henningham A, Yamaguchi M, Aziz RK, Kuipers K, Buffalo CZ, Dahesh S, Choudhury B, Van Vleet J, Yamaguchi Y, Seymour LM, Ben Zakour NL, He L, Smith HV, Grimwood K, Beatson SA, Ghosh P, Walker MJ, Nizet V, Cole JN.

J Biol Chem. 2014 Nov 14;289(46):32303-15. doi: 10.1074/jbc.M114.602847. Epub 2014 Sep 29.

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