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Items: 1 to 20 of 72

1.

Reliability of a participant-friendly fecal collection method for microbiome analyses: a step towards large sample size investigation.

Szopinska JW, Gresse R, van der Marel S, Boekhorst J, Lukovac S, van Swam I, Franke B, Timmerman H, Belzer C, Arias Vasquez A.

BMC Microbiol. 2018 Sep 6;18(1):110. doi: 10.1186/s12866-018-1249-x.

2.

The Effect of DNA Extraction Methods on Observed Microbial Communities from Fibrous and Liquid Rumen Fractions of Dairy Cows.

Vaidya JD, van den Bogert B, Edwards JE, Boekhorst J, van Gastelen S, Saccenti E, Plugge CM, Smidt H.

Front Microbiol. 2018 Jan 31;9:92. doi: 10.3389/fmicb.2018.00092. eCollection 2018.

3.

Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses.

Ederveen THA, Ferwerda G, Ahout IM, Vissers M, de Groot R, Boekhorst J, Timmerman HM, Huynen MA, van Hijum SAFT, de Jonge MI.

Microbiome. 2018 Jan 11;6(1):10. doi: 10.1186/s40168-017-0395-y.

4.

Gut microbiome in ADHD and its relation to neural reward anticipation.

Aarts E, Ederveen THA, Naaijen J, Zwiers MP, Boekhorst J, Timmerman HM, Smeekens SP, Netea MG, Buitelaar JK, Franke B, van Hijum SAFT, Arias Vasquez A.

PLoS One. 2017 Sep 1;12(9):e0183509. doi: 10.1371/journal.pone.0183509. eCollection 2017.

5.

Intestinal colonisation patterns in breastfed and formula-fed infants during the first 12 weeks of life reveal sequential microbiota signatures.

Timmerman HM, Rutten NBMM, Boekhorst J, Saulnier DM, Kortman GAM, Contractor N, Kullen M, Floris E, Harmsen HJM, Vlieger AM, Kleerebezem M, Rijkers GT.

Sci Rep. 2017 Aug 21;7(1):8327. doi: 10.1038/s41598-017-08268-4.

6.

Prebiotic galacto-oligosaccharides mitigate the adverse effects of iron fortification on the gut microbiome: a randomised controlled study in Kenyan infants.

Paganini D, Uyoga MA, Kortman GAM, Cercamondi CI, Moretti D, Barth-Jaeggi T, Schwab C, Boekhorst J, Timmerman HM, Lacroix C, Karanja S, Zimmermann MB.

Gut. 2017 Nov;66(11):1956-1967. doi: 10.1136/gutjnl-2017-314418. Epub 2017 Aug 3.

PMID:
28774885
7.

ANGPTL4 promotes bile acid absorption during taurocholic acid supplementation via a mechanism dependent on the gut microbiota.

Janssen AWF, Dijk W, Boekhorst J, Kuipers F, Groen AK, Lukovac S, Hooiveld GJEJ, Kersten S.

Biochim Biophys Acta Mol Cell Biol Lipids. 2017 Oct;1862(10 Pt A):1056-1067. doi: 10.1016/j.bbalip.2017.07.005. Epub 2017 Jul 18.

PMID:
28733267
8.

Aberrant intestinal microbiota due to IL-1 receptor antagonist deficiency promotes IL-17- and TLR4-dependent arthritis.

Rogier R, Ederveen THA, Boekhorst J, Wopereis H, Scher JU, Manasson J, Frambach SJCM, Knol J, Garssen J, van der Kraan PM, Koenders MI, van den Berg WB, van Hijum SAFT, Abdollahi-Roodsaz S.

Microbiome. 2017 Jun 23;5(1):63. doi: 10.1186/s40168-017-0278-2.

9.

Draft Genome Sequences of 24 Lactococcus lactis Strains.

Backus L, Wels M, Boekhorst J, Dijkstra AR, Beerthuyzen M, Kelly WJ, Siezen RJ, van Hijum SA, Bachmann H.

Genome Announc. 2017 Mar 30;5(13). pii: e01737-16. doi: 10.1128/genomeA.01737-16.

10.

Draft Genome Sequences of 11 Lactococcus lactis subsp. cremoris Strains.

Wels M, Backus L, Boekhorst J, Dijkstra A, Beerthuyzen M, Siezen RJ, Bachmann H, van Hijum SA.

Genome Announc. 2017 Mar 16;5(11). pii: e01739-16. doi: 10.1128/genomeA.01739-16.

11.

High-Level Heat Resistance of Spores of Bacillus amyloliquefaciens and Bacillus licheniformis Results from the Presence of a spoVA Operon in a Tn1546 Transposon.

Berendsen EM, Koning RA, Boekhorst J, de Jong A, Kuipers OP, Wells-Bennik MH.

Front Microbiol. 2016 Dec 2;7:1912. eCollection 2016.

12.

Reply to Meisel et al.

Zeeuwen PLJM, Boekhorst J, Ederveen THA, Kleerebezem M, Schalkwijk J, van Hijum SAFT, Timmerman HM.

J Invest Dermatol. 2017 Apr;137(4):961-962. doi: 10.1016/j.jid.2016.11.013. Epub 2016 Nov 22. No abstract available.

13.

Analysis of Germination Capacity and Germinant Receptor (Sub)clusters of Genome-Sequenced Bacillus cereus Environmental Isolates and Model Strains.

Warda AK, Xiao Y, Boekhorst J, Wells-Bennik MH, Nierop Groot MN, Abee T.

Appl Environ Microbiol. 2017 Feb 1;83(4). pii: e02490-16. doi: 10.1128/AEM.02490-16. Print 2017 Feb 15.

14.

A mobile genetic element profoundly increases heat resistance of bacterial spores.

Berendsen EM, Boekhorst J, Kuipers OP, Wells-Bennik MH.

ISME J. 2016 Nov;10(11):2633-2642. doi: 10.1038/ismej.2016.59. Epub 2016 Apr 22.

15.

Gram-positive anaerobe cocci are underrepresented in the microbiome of filaggrin-deficient human skin.

Zeeuwen PL, Ederveen TH, van der Krieken DA, Niehues H, Boekhorst J, Kezic S, Hanssen DA, Otero ME, van Vlijmen-Willems IM, Rodijk-Olthuis D, Falcone D, van den Bogaard EH, Kamsteeg M, de Koning HD, Zeeuwen-Franssen ME, van Steensel MA, Kleerebezem M, Timmerman HM, van Hijum SA, Schalkwijk J.

J Allergy Clin Immunol. 2017 Apr;139(4):1368-1371. doi: 10.1016/j.jaci.2016.09.017. Epub 2016 Oct 8. No abstract available.

16.

Draft Genome Sequences of Four Thermophilic Spore Formers Isolated from a Dairy-Processing Environment.

Caspers MP, Boekhorst J, de Jong A, Kort R, Nierop Groot M, Abee T.

Genome Announc. 2016 Aug 11;4(4). pii: e00757-16. doi: 10.1128/genomeA.00757-16.

17.

Draft Whole-Genome Sequences of Three Lactobacillus plantarum Food Isolates.

Fernández Ramírez MD, Boekhorst J, de Jong A, Kuipers OP, Abee T, Nierop Groot MN.

Genome Announc. 2016 Jun 16;4(3). pii: e00560-16. doi: 10.1128/genomeA.00560-16.

18.

Linking Bacillus cereus Genotypes and Carbohydrate Utilization Capacity.

Warda AK, Siezen RJ, Boekhorst J, Wells-Bennik MH, de Jong A, Kuipers OP, Nierop Groot MN, Abee T.

PLoS One. 2016 Jun 7;11(6):e0156796. doi: 10.1371/journal.pone.0156796. eCollection 2016.

19.

Draft Whole-Genome Sequences of 11 Bacillus cereus Food Isolates.

Hayrapetyan H, Boekhorst J, de Jong A, Kuipers OP, Nierop Groot MN, Abee T.

Genome Announc. 2016 Jun 2;4(3). pii: e00485-16. doi: 10.1128/genomeA.00485-16.

20.

A transposon present in specific strains of Bacillus subtilis negatively affects nutrient- and dodecylamine-induced spore germination.

Krawczyk AO, Berendsen EM, de Jong A, Boekhorst J, Wells-Bennik MH, Kuipers OP, Eijlander RT.

Environ Microbiol. 2016 Dec;18(12):4830-4846. doi: 10.1111/1462-2920.13386. Epub 2016 Jun 27.

PMID:
27234229

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