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Items: 1 to 50 of 191

1.

Erratum: The Beaker phenomenon and the genomic transformation of northwest Europe.

Olalde I, Brace S, Allentoft ME, Armit I, Kristiansen K, Booth T, Rohland N, Mallick S, Szécsényi-Nagy A, Mittnik A, Altena E, Lipson M, Lazaridis I, Harper TK, Patterson N, Broomandkhoshbacht N, Diekmann Y, Faltyskova Z, Fernandes D, Ferry M, Harney E, de Knijff P, Michel M, Oppenheimer J, Stewardson K, Barclay A, Alt KW, Liesau C, Ríos P, Blasco C, Miguel JV, García RM, Fernández AA, Bánffy E, Bernabò-Brea M, Billoin D, Bonsall C, Bonsall L, Allen T, Büster L, Carver S, Navarro LC, Craig OE, Cook GT, Cunliffe B, Denaire A, Dinwiddy KE, Dodwell N, Ernée M, Evans C, Kuchařík M, Farré JF, Fowler C, Gazenbeek M, Pena RG, Haber-Uriarte M, Haduch E, Hey G, Jowett N, Knowles T, Massy K, Pfrengle S, Lefranc P, Lemercier O, Lefebvre A, Martínez CH, Olmo VG, Ramírez AB, Maurandi JL, Majó T, McKinley JI, McSweeney K, Mende BG, Modi A, Kulcsár G, Kiss V, Czene A, Patay R, Endrődi A, Köhler K, Hajdu T, Szeniczey T, Dani J, Bernert Z, Hoole M, Cheronet O, Keating D, Velemínský P, Dobeš M, Candilio F, Brown F, Fernández RF, Herrero-Corral AM, Tusa S, Carnieri E, Lentini L, Valenti A, Zanini A, Waddington C, Delibes G, Guerra-Doce E, Neil B, Brittain M, Luke M, Mortimer R, Desideri J, Besse M, Brücken G, Furmanek M, Hałuszko A, Mackiewicz M, Rapiński A, Leach S, Soriano I, Lillios KT, Cardoso JL, Pearson MP, Włodarczak P, Price TD, Prieto P, Rey PJ, Risch R, Guerra MAR, Schmitt A, Serralongue J, Silva AM, Smrčka V, Vergnaud L, Zilhão J, Caramelli D, Higham T, Thomas MG, Kennett DJ, Fokkens H, Heyd V, Sheridan A, Sjögren KG, Stockhammer PW, Krause J, Pinhasi R, Haak W, Barnes I, Lalueza-Fox C, Reich D.

Nature. 2018 Mar 21;555(7697):543. doi: 10.1038/nature26164.

PMID:
29565364
2.

The Beaker phenomenon and the genomic transformation of northwest Europe.

Olalde I, Brace S, Allentoft ME, Armit I, Kristiansen K, Booth T, Rohland N, Mallick S, Szécsényi-Nagy A, Mittnik A, Altena E, Lipson M, Lazaridis I, Harper TK, Patterson N, Broomandkhoshbacht N, Diekmann Y, Faltyskova Z, Fernandes D, Ferry M, Harney E, de Knijff P, Michel M, Oppenheimer J, Stewardson K, Barclay A, Alt KW, Liesau C, Ríos P, Blasco C, Miguel JV, García RM, Fernández AA, Bánffy E, Bernabò-Brea M, Billoin D, Bonsall C, Bonsall L, Allen T, Büster L, Carver S, Navarro LC, Craig OE, Cook GT, Cunliffe B, Denaire A, Dinwiddy KE, Dodwell N, Ernée M, Evans C, Kuchařík M, Farré JF, Fowler C, Gazenbeek M, Pena RG, Haber-Uriarte M, Haduch E, Hey G, Jowett N, Knowles T, Massy K, Pfrengle S, Lefranc P, Lemercier O, Lefebvre A, Martínez CH, Olmo VG, Ramírez AB, Maurandi JL, Majó T, McKinley JI, McSweeney K, Mende BG, Modi A, Kulcsár G, Kiss V, Czene A, Patay R, Endrődi A, Köhler K, Hajdu T, Szeniczey T, Dani J, Bernert Z, Hoole M, Cheronet O, Keating D, Velemínský P, Dobeš M, Candilio F, Brown F, Fernández RF, Herrero-Corral AM, Tusa S, Carnieri E, Lentini L, Valenti A, Zanini A, Waddington C, Delibes G, Guerra-Doce E, Neil B, Brittain M, Luke M, Mortimer R, Desideri J, Besse M, Brücken G, Furmanek M, Hałuszko A, Mackiewicz M, Rapiński A, Leach S, Soriano I, Lillios KT, Cardoso JL, Pearson MP, Włodarczak P, Price TD, Prieto P, Rey PJ, Risch R, Rojo Guerra MA, Schmitt A, Serralongue J, Silva AM, Smrčka V, Vergnaud L, Zilhão J, Caramelli D, Higham T, Thomas MG, Kennett DJ, Fokkens H, Heyd V, Sheridan A, Sjögren KG, Stockhammer PW, Krause J, Pinhasi R, Haak W, Barnes I, Lalueza-Fox C, Reich D.

Nature. 2018 Mar 8;555(7695):190-196. doi: 10.1038/nature25738. Epub 2018 Feb 21. Erratum in: Nature. 2018 Mar 21;555(7697):543.

PMID:
29466337
3.

A SNP panel for identification of DNA and RNA specimens.

Yousefi S, Abbassi-Daloii T, Kraaijenbrink T, Vermaat M, Mei H, van 't Hof P, van Iterson M, Zhernakova DV, Claringbould A, Franke L, 't Hart LM, Slieker RC, van der Heijden A, de Knijff P; BIOS consortium, 't Hoen PAC.

BMC Genomics. 2018 Jan 25;19(1):90. doi: 10.1186/s12864-018-4482-7.

4.

Decay of Sexual Trait Genes in an Asexual Parasitoid Wasp.

Kraaijeveld K, Anvar SY, Frank J, Schmitz A, Bast J, Wilbrandt J, Petersen M, Ziesmann T, Niehuis O, de Knijff P, den Dunnen JT, Ellers J.

Genome Biol Evol. 2016 Dec 1;8(12):3685-3695. doi: 10.1093/gbe/evw273.

5.

FDSTools: A software package for analysis of massively parallel sequencing data with the ability to recognise and correct STR stutter and other PCR or sequencing noise.

Hoogenboom J, van der Gaag KJ, de Leeuw RH, Sijen T, de Knijff P, Laros JF.

Forensic Sci Int Genet. 2017 Mar;27:27-40. doi: 10.1016/j.fsigen.2016.11.007. Epub 2016 Nov 27.

6.

Male-specific risk of first and recurrent venous thrombosis: a phylogenetic analysis of the Y chromosome.

de Haan HG, van Hylckama Vlieg A, van der Gaag KJ, de Knijff P, Rosendaal FR.

J Thromb Haemost. 2016 Oct;14(10):1971-1977. doi: 10.1111/jth.13437. Epub 2016 Oct 12.

PMID:
27495181
7.

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.

Mallick S, Li H, Lipson M, Mathieson I, Gymrek M, Racimo F, Zhao M, Chennagiri N, Nordenfelt S, Tandon A, Skoglund P, Lazaridis I, Sankararaman S, Fu Q, Rohland N, Renaud G, Erlich Y, Willems T, Gallo C, Spence JP, Song YS, Poletti G, Balloux F, van Driem G, de Knijff P, Romero IG, Jha AR, Behar DM, Bravi CM, Capelli C, Hervig T, Moreno-Estrada A, Posukh OL, Balanovska E, Balanovsky O, Karachanak-Yankova S, Sahakyan H, Toncheva D, Yepiskoposyan L, Tyler-Smith C, Xue Y, Abdullah MS, Ruiz-Linares A, Beall CM, Di Rienzo A, Jeong C, Starikovskaya EB, Metspalu E, Parik J, Villems R, Henn BM, Hodoglugil U, Mahley R, Sajantila A, Stamatoyannopoulos G, Wee JT, Khusainova R, Khusnutdinova E, Litvinov S, Ayodo G, Comas D, Hammer MF, Kivisild T, Klitz W, Winkler CA, Labuda D, Bamshad M, Jorde LB, Tishkoff SA, Watkins WS, Metspalu M, Dryomov S, Sukernik R, Singh L, Thangaraj K, Pääbo S, Kelso J, Patterson N, Reich D.

Nature. 2016 Oct 13;538(7624):201-206. doi: 10.1038/nature18964. Epub 2016 Sep 21.

8.

Phylogeographic Patterns in Africa and High Resolution Delineation of Genetic Clades in the Lion (Panthera leo).

Bertola LD, Jongbloed H, van der Gaag KJ, de Knijff P, Yamaguchi N, Hooghiemstra H, Bauer H, Henschel P, White PA, Driscoll CA, Tende T, Ottosson U, Saidu Y, Vrieling K, de Iongh HH.

Sci Rep. 2016 Aug 4;6:30807. doi: 10.1038/srep30807.

9.

Genetic variants determining survival and fertility in an adverse African environment: a population-based large-scale candidate gene association study.

Koopman JJ, Pijpe J, Böhringer S, van Bodegom D, Eriksson UK, Sanchez-Faddeev H, Ziem JB, Zwaan B, Slagboom PE, de Knijff P, Westendorp RG.

Aging (Albany NY). 2016 Jul;8(7):1364-83. doi: 10.18632/aging.100986.

10.

Massively parallel sequencing of short tandem repeats-Population data and mixture analysis results for the PowerSeq™ system.

van der Gaag KJ, de Leeuw RH, Hoogenboom J, Patel J, Storts DR, Laros JFJ, de Knijff P.

Forensic Sci Int Genet. 2016 Sep;24:86-96. doi: 10.1016/j.fsigen.2016.05.016. Epub 2016 Jun 7.

11.

Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: support for a variable-size bottleneck.

Li M, Rothwell R, Vermaat M, Wachsmuth M, Schröder R, Laros JF, van Oven M, de Bakker PI, Bovenberg JA, van Duijn CM, van Ommen GJ, Slagboom PE, Swertz MA, Wijmenga C; Genome of Netherlands Consortium, Kayser M, Boomsma DI, Zöllner S, de Knijff P, Stoneking M.

Genome Res. 2016 Apr;26(4):417-26. doi: 10.1101/gr.203216.115. Epub 2016 Feb 25.

12.

Wide distribution and altitude correlation of an archaic high-altitude-adaptive EPAS1 haplotype in the Himalayas.

Hackinger S, Kraaijenbrink T, Xue Y, Mezzavilla M, Asan, van Driem G, Jobling MA, de Knijff P, Tyler-Smith C, Ayub Q.

Hum Genet. 2016 Apr;135(4):393-402. doi: 10.1007/s00439-016-1641-2. Epub 2016 Feb 16.

13.

High-quality mtDNA control region sequences from 680 individuals sampled across the Netherlands to establish a national forensic mtDNA reference database.

Chaitanya L, van Oven M, Brauer S, Zimmermann B, Huber G, Xavier C, Parson W, de Knijff P, Kayser M.

Forensic Sci Int Genet. 2016 Mar;21:158-67. doi: 10.1016/j.fsigen.2015.12.002. Epub 2015 Dec 10.

PMID:
26774101
14.

Large-scale recent expansion of European patrilineages shown by population resequencing.

Batini C, Hallast P, Zadik D, Delser PM, Benazzo A, Ghirotto S, Arroyo-Pardo E, Cavalleri GL, de Knijff P, Dupuy BM, Eriksen HA, King TE, López de Munain A, López-Parra AM, Loutradis A, Milasin J, Novelletto A, Pamjav H, Sajantila A, Tolun A, Winney B, Jobling MA.

Nat Commun. 2015 May 19;6:7152. doi: 10.1038/ncomms8152.

15.

Determining the quality and complexity of next-generation sequencing data without a reference genome.

Anvar SY, Khachatryan L, Vermaat M, van Galen M, Pulyakhina I, Ariyurek Y, Kraaijeveld K, den Dunnen JT, de Knijff P, 't Hoen PA, Laros JF.

Genome Biol. 2014;15(12):555.

16.

The Y-chromosome tree bursts into leaf: 13,000 high-confidence SNPs covering the majority of known clades.

Hallast P, Batini C, Zadik D, Maisano Delser P, Wetton JH, Arroyo-Pardo E, Cavalleri GL, de Knijff P, Destro Bisol G, Dupuy BM, Eriksen HA, Jorde LB, King TE, Larmuseau MH, López de Munain A, López-Parra AM, Loutradis A, Milasin J, Novelletto A, Pamjav H, Sajantila A, Schempp W, Sears M, Tolun A, Tyler-Smith C, Van Geystelen A, Watkins S, Winney B, Jobling MA.

Mol Biol Evol. 2015 Mar;32(3):661-73. doi: 10.1093/molbev/msu327. Epub 2014 Dec 2.

17.

Analysis of 36 Y-STR marker units including a concordance study among 2085 Dutch males.

Westen AA, Kraaijenbrink T, Clarisse L, Grol LJ, Willemse P, Zuniga SB, Robles de Medina EA, Schouten R, van der Gaag KJ, Weiler NE, Kal AJ, Kayser M, Sijen T, de Knijff P.

Forensic Sci Int Genet. 2015 Jan;14:174-81. doi: 10.1016/j.fsigen.2014.10.012. Epub 2014 Oct 23.

18.

De novo transcriptome of Ischnura elegans provides insights into sensory biology, colour and vision genes.

Chauhan P, Hansson B, Kraaijeveld K, de Knijff P, Svensson EI, Wellenreuther M.

BMC Genomics. 2014 Sep 22;15:808. doi: 10.1186/1471-2164-15-808.

19.

Genetics. How carrion and hooded crows defeat Linnaeus's curse.

de Knijff P.

Science. 2014 Jun 20;344(6190):1345-6. doi: 10.1126/science.1255744. No abstract available.

PMID:
24948724
20.

The contribution of DNA metabarcoding to fungal conservation: diversity assessment, habitat partitioning and mapping red-listed fungi in protected coastal Salix repens communities in the Netherlands.

Geml J, Gravendeel B, van der Gaag KJ, Neilen M, Lammers Y, Raes N, Semenova TA, de Knijff P, Noordeloos ME.

PLoS One. 2014 Jun 17;9(6):e99852. doi: 10.1371/journal.pone.0099852. eCollection 2014.

21.

Toward male individualization with rapidly mutating y-chromosomal short tandem repeats.

Ballantyne KN, Ralf A, Aboukhalid R, Achakzai NM, Anjos MJ, Ayub Q, Balažic J, Ballantyne J, Ballard DJ, Berger B, Bobillo C, Bouabdellah M, Burri H, Capal T, Caratti S, Cárdenas J, Cartault F, Carvalho EF, Carvalho M, Cheng B, Coble MD, Comas D, Corach D, D'Amato ME, Davison S, de Knijff P, De Ungria MC, Decorte R, Dobosz T, Dupuy BM, Elmrghni S, Gliwiński M, Gomes SC, Grol L, Haas C, Hanson E, Henke J, Henke L, Herrera-Rodríguez F, Hill CR, Holmlund G, Honda K, Immel UD, Inokuchi S, Jobling MA, Kaddura M, Kim JS, Kim SH, Kim W, King TE, Klausriegler E, Kling D, Kovačević L, Kovatsi L, Krajewski P, Kravchenko S, Larmuseau MH, Lee EY, Lessig R, Livshits LA, Marjanović D, Minarik M, Mizuno N, Moreira H, Morling N, Mukherjee M, Munier P, Nagaraju J, Neuhuber F, Nie S, Nilasitsataporn P, Nishi T, Oh HH, Olofsson J, Onofri V, Palo JU, Pamjav H, Parson W, Petlach M, Phillips C, Ploski R, Prasad SP, Primorac D, Purnomo GA, Purps J, Rangel-Villalobos H, Rębała K, Rerkamnuaychoke B, Gonzalez DR, Robino C, Roewer L, Rosa A, Sajantila A, Sala A, Salvador JM, Sanz P, Schmitt C, Sharma AK, Silva DA, Shin KJ, Sijen T, Sirker M, Siváková D, Skaro V, Solano-Matamoros C, Souto L, Stenzl V, Sudoyo H, Syndercombe-Court D, Tagliabracci A, Taylor D, Tillmar A, Tsybovsky IS, Tyler-Smith C, van der Gaag KJ, Vanek D, Völgyi A, Ward D, Willemse P, Yap EP, Yong RY, Pajnič IZ, Kayser M.

Hum Mutat. 2014 Aug;35(8):1021-32. doi: 10.1002/humu.22599. Epub 2014 Jul 14.

22.

A global analysis of Y-chromosomal haplotype diversity for 23 STR loci.

Purps J, Siegert S, Willuweit S, Nagy M, Alves C, Salazar R, Angustia SM, Santos LH, Anslinger K, Bayer B, Ayub Q, Wei W, Xue Y, Tyler-Smith C, Bafalluy MB, Martínez-Jarreta B, Egyed B, Balitzki B, Tschumi S, Ballard D, Court DS, Barrantes X, Bäßler G, Wiest T, Berger B, Niederstätter H, Parson W, Davis C, Budowle B, Burri H, Borer U, Koller C, Carvalho EF, Domingues PM, Chamoun WT, Coble MD, Hill CR, Corach D, Caputo M, D'Amato ME, Davison S, Decorte R, Larmuseau MH, Ottoni C, Rickards O, Lu D, Jiang C, Dobosz T, Jonkisz A, Frank WE, Furac I, Gehrig C, Castella V, Grskovic B, Haas C, Wobst J, Hadzic G, Drobnic K, Honda K, Hou Y, Zhou D, Li Y, Hu S, Chen S, Immel UD, Lessig R, Jakovski Z, Ilievska T, Klann AE, García CC, de Knijff P, Kraaijenbrink T, Kondili A, Miniati P, Vouropoulou M, Kovacevic L, Marjanovic D, Lindner I, Mansour I, Al-Azem M, Andari AE, Marino M, Furfuro S, Locarno L, Martín P, Luque GM, Alonso A, Miranda LS, Moreira H, Mizuno N, Iwashima Y, Neto RS, Nogueira TL, Silva R, Nastainczyk-Wulf M, Edelmann J, Kohl M, Nie S, Wang X, Cheng B, Núñez C, Pancorbo MM, Olofsson JK, Morling N, Onofri V, Tagliabracci A, Pamjav H, Volgyi A, Barany G, Pawlowski R, Maciejewska A, Pelotti S, Pepinski W, Abreu-Glowacka M, Phillips C, Cárdenas J, Rey-Gonzalez D, Salas A, Brisighelli F, Capelli C, Toscanini U, Piccinini A, Piglionica M, Baldassarra SL, Ploski R, Konarzewska M, Jastrzebska E, Robino C, Sajantila A, Palo JU, Guevara E, Salvador J, Ungria MC, Rodriguez JJ, Schmidt U, Schlauderer N, Saukko P, Schneider PM, Sirker M, Shin KJ, Oh YN, Skitsa I, Ampati A, Smith TG, Calvit LS, Stenzl V, Capal T, Tillmar A, Nilsson H, Turrina S, De Leo D, Verzeletti A, Cortellini V, Wetton JH, Gwynne GM, Jobling MA, Whittle MR, Sumita DR, Wolańska-Nowak P, Yong RY, Krawczak M, Nothnagel M, Roewer L.

Forensic Sci Int Genet. 2014 Sep;12:12-23. doi: 10.1016/j.fsigen.2014.04.008. Epub 2014 Apr 28.

23.

Comparing six commercial autosomal STR kits in a large Dutch population sample.

Westen AA, Kraaijenbrink T, Robles de Medina EA, Harteveld J, Willemse P, Zuniga SB, van der Gaag KJ, Weiler NE, Warnaar J, Kayser M, Sijen T, de Knijff P.

Forensic Sci Int Genet. 2014 May;10:55-63. doi: 10.1016/j.fsigen.2014.01.008. Epub 2014 Feb 4.

24.

Developmental validation of mitochondrial DNA genotyping assays for adept matrilineal inference of biogeographic ancestry at a continental level.

Chaitanya L, van Oven M, Weiler N, Harteveld J, Wirken L, Sijen T, de Knijff P, Kayser M.

Forensic Sci Int Genet. 2014 Jul;11:39-51. doi: 10.1016/j.fsigen.2014.02.010. Epub 2014 Feb 23.

PMID:
24631695
25.

A linguistically informed autosomal STR survey of human populations residing in the greater Himalayan region.

Kraaijenbrink T, van der Gaag KJ, Zuniga SB, Xue Y, Carvalho-Silva DR, Tyler-Smith C, Jobling MA, Parkin EJ, Su B, Shi H, Xiao CJ, Tang WR, Kashyap VK, Trivedi R, Sitalaximi T, Banerjee J, Karma Tshering of Gaselô, Tuladhar NM, Opgenort JR, van Driem GL, Barbujani G, de Knijff P.

PLoS One. 2014 Mar 10;9(3):e91534. doi: 10.1371/journal.pone.0091534. eCollection 2014.

26.

Gene conversion violates the stepwise mutation model for microsatellites in y-chromosomal palindromic repeats.

Balaresque P, King TE, Parkin EJ, Heyer E, Carvalho-Silva D, Kraaijenbrink T, de Knijff P, Tyler-Smith C, Jobling MA.

Hum Mutat. 2014 May;35(5):609-17. doi: 10.1002/humu.22542.

27.

Recent radiation within Y-chromosomal haplogroup R-M269 resulted in high Y-STR haplotype resemblance.

Larmuseau MH, Vanderheyden N, Van Geystelen A, van Oven M, de Knijff P, Decorte R.

Ann Hum Genet. 2014 Mar;78(2):92-103. doi: 10.1111/ahg.12050.

28.

TSSV: a tool for characterization of complex allelic variants in pure and mixed genomes.

Anvar SY, van der Gaag KJ, van der Heijden JW, Veltrop MH, Vossen RH, de Leeuw RH, Breukel C, Buermans HP, Verbeek JS, de Knijff P, den Dunnen JT, Laros JF.

Bioinformatics. 2014 Jun 15;30(12):1651-9. doi: 10.1093/bioinformatics/btu068. Epub 2014 Feb 13.

PMID:
24532718
29.

Developmental validation of the HIrisPlex system: DNA-based eye and hair colour prediction for forensic and anthropological usage.

Walsh S, Chaitanya L, Clarisse L, Wirken L, Draus-Barini J, Kovatsi L, Maeda H, Ishikawa T, Sijen T, de Knijff P, Branicki W, Liu F, Kayser M.

Forensic Sci Int Genet. 2014 Mar;9:150-61. doi: 10.1016/j.fsigen.2013.12.006. Epub 2013 Dec 27.

PMID:
24528593
30.

Patterns in nuclear and mitochondrial DNA reveal historical and recent isolation in the Black-tailed Godwit (Limosa limosa).

Trimbos KB, Doorenweerd C, Kraaijeveld K, Musters CJ, Groen NM, de Knijff P, Piersma T, de Snoo GR.

PLoS One. 2014 Jan 9;9(1):e83949. doi: 10.1371/journal.pone.0083949. eCollection 2014.

31.

Quality assessment of the genetic test for familial hypercholesterolemia in the Netherlands.

Kindt I, Huijgen R, Boekel M, van der Gaag KJ, Defesche JC, Kastelein JJ, de Knijff P.

Cholesterol. 2013;2013:531658. doi: 10.1155/2013/531658. Epub 2013 Jul 8.

32.

Secretory phospholipase A(2)-IIA and cardiovascular disease: a mendelian randomization study.

Holmes MV, Simon T, Exeter HJ, Folkersen L, Asselbergs FW, Guardiola M, Cooper JA, Palmen J, Hubacek JA, Carruthers KF, Horne BD, Brunisholz KD, Mega JL, van Iperen EPA, Li M, Leusink M, Trompet S, Verschuren JJW, Hovingh GK, Dehghan A, Nelson CP, Kotti S, Danchin N, Scholz M, Haase CL, Rothenbacher D, Swerdlow DI, Kuchenbaecker KB, Staines-Urias E, Goel A, van 't Hooft F, Gertow K, de Faire U, Panayiotou AG, Tremoli E, Baldassarre D, Veglia F, Holdt LM, Beutner F, Gansevoort RT, Navis GJ, Mateo Leach I, Breitling LP, Brenner H, Thiery J, Dallmeier D, Franco-Cereceda A, Boer JMA, Stephens JW, Hofker MH, Tedgui A, Hofman A, Uitterlinden AG, Adamkova V, Pitha J, Onland-Moret NC, Cramer MJ, Nathoe HM, Spiering W, Klungel OH, Kumari M, Whincup PH, Morrow DA, Braund PS, Hall AS, Olsson AG, Doevendans PA, Trip MD, Tobin MD, Hamsten A, Watkins H, Koenig W, Nicolaides AN, Teupser D, Day INM, Carlquist JF, Gaunt TR, Ford I, Sattar N, Tsimikas S, Schwartz GG, Lawlor DA, Morris RW, Sandhu MS, Poledne R, Maitland-van der Zee AH, Khaw KT, Keating BJ, van der Harst P, Price JF, Mehta SR, Yusuf S, Witteman JCM, Franco OH, Jukema JW, de Knijff P, Tybjaerg-Hansen A, Rader DJ, Farrall M, Samani NJ, Kivimaki M, Fox KAA, Humphries SE, Anderson JL, Boekholdt SM, Palmer TM, Eriksson P, Paré G, Hingorani AD, Sabatine MS, Mallat Z, Casas JP, Talmud PJ.

J Am Coll Cardiol. 2013 Nov 19;62(21):1966-1976. doi: 10.1016/j.jacc.2013.06.044. Epub 2013 Jul 31.

33.

Variations in predicted risks in personal genome testing for common complex diseases.

Kalf RR, Mihaescu R, Kundu S, de Knijff P, Green RC, Janssens AC.

Genet Med. 2014 Jan;16(1):85-91. doi: 10.1038/gim.2013.80. Epub 2013 Jun 27.

34.

Ancestral stories of Ghanaian Bimoba reflect millennia-old genetic lineages.

Sanchez-Faddeev H, Pijpe J, van Bodegom D, van der Hulle T, van der Gaag KJ, Eriksson UK, Spear T, Westendorp RG, de Knijff P.

PLoS One. 2013 Jun 12;8(6):e65690. doi: 10.1371/journal.pone.0065690. Print 2013.

35.

The Genome of the Netherlands: design, and project goals.

Boomsma DI, Wijmenga C, Slagboom EP, Swertz MA, Karssen LC, Abdellaoui A, Ye K, Guryev V, Vermaat M, van Dijk F, Francioli LC, Hottenga JJ, Laros JF, Li Q, Li Y, Cao H, Chen R, Du Y, Li N, Cao S, van Setten J, Menelaou A, Pulit SL, Hehir-Kwa JY, Beekman M, Elbers CC, Byelas H, de Craen AJ, Deelen P, Dijkstra M, den Dunnen JT, de Knijff P, Houwing-Duistermaat J, Koval V, Estrada K, Hofman A, Kanterakis A, Enckevort Dv, Mai H, Kattenberg M, van Leeuwen EM, Neerincx PB, Oostra B, Rivadeneira F, Suchiman EH, Uitterlinden AG, Willemsen G, Wolffenbuttel BH, Wang J, de Bakker PI, van Ommen GJ, van Duijn CM.

Eur J Hum Genet. 2014 Feb;22(2):221-7. doi: 10.1038/ejhg.2013.118. Epub 2013 May 29.

36.

Clinal distribution of human genomic diversity across the Netherlands despite archaeological evidence for genetic discontinuities in Dutch population history.

Lao O, Altena E, Becker C, Brauer S, Kraaijenbrink T, van Oven M, Nürnberg P, de Knijff P, Kayser M.

Investig Genet. 2013 May 20;4(1):9. doi: 10.1186/2041-2223-4-9.

37.

Population structure, migration, and diversifying selection in the Netherlands.

Abdellaoui A, Hottenga JJ, de Knijff P, Nivard MG, Xiao X, Scheet P, Brooks A, Ehli EA, Hu Y, Davies GE, Hudziak JJ, Sullivan PF, van Beijsterveldt T, Willemsen G, de Geus EJ, Penninx BW, Boomsma DI.

Eur J Hum Genet. 2013 Nov;21(11):1277-85. doi: 10.1038/ejhg.2013.48. Epub 2013 Mar 27.

38.

Indian Ocean crossroads: human genetic origin and population structure in the Maldives.

Pijpe J, de Voogt A, van Oven M, Henneman P, van der Gaag KJ, Kayser M, de Knijff P.

Am J Phys Anthropol. 2013 May;151(1):58-67. doi: 10.1002/ajpa.22256. Epub 2013 Mar 21.

39.

Genome-wide analysis of macrosatellite repeat copy number variation in worldwide populations: evidence for differences and commonalities in size distributions and size restrictions.

Schaap M, Lemmers RJ, Maassen R, van der Vliet PJ, Hoogerheide LF, van Dijk HK, Baştürk N, de Knijff P, van der Maarel SM.

BMC Genomics. 2013 Mar 4;14:143. doi: 10.1186/1471-2164-14-143.

40.

The influence of clan structure on the genetic variation in a single Ghanaian village.

Sanchez-Faddeev H, Pijpe J, van der Hulle T, Meij HJ, van der Gaag KJ, Slagboom PE, Westendorp RG, de Knijff P.

Eur J Hum Genet. 2013 Oct;21(10):1134-9. doi: 10.1038/ejhg.2013.12. Epub 2013 Feb 27.

41.

Improved analysis of long STR amplicons from degraded single source and mixed DNA.

Westen AA, van der Gaag KJ, de Knijff P, Sijen T.

Int J Legal Med. 2013 Jul;127(4):741-7. doi: 10.1007/s00414-012-0816-1. Epub 2013 Jan 10.

PMID:
23306520
42.

Mosaic segmental uniparental isodisomy and progressive clonal selection: a common mechanism of late onset β-thalassemia major.

Harteveld CL, Refaldi C, Giambona A, Ruivenkamp CA, Hoffer MJ, Pijpe J, De Knijff P, Borgna-Pignatti C, Maggio A, Cappellini MD, Giordano PC.

Haematologica. 2013 May;98(5):691-5. doi: 10.3324/haematol.2012.065219. Epub 2012 Sep 14.

43.

Combining results of forensic STR kits: HDplex validation including allelic association and linkage testing with NGM and Identifiler loci.

Westen AA, Haned H, Grol LJ, Harteveld J, van der Gaag KJ, de Knijff P, Sijen T.

Int J Legal Med. 2012 Sep;126(5):781-9. doi: 10.1007/s00414-012-0724-4. Epub 2012 Jul 3.

PMID:
22752809
44.

Assessment of the stochastic threshold, back- and forward stutter filters and low template techniques for NGM.

Westen AA, Grol LJ, Harteveld J, Matai AS, de Knijff P, Sijen T.

Forensic Sci Int Genet. 2012 Dec;6(6):708-15. doi: 10.1016/j.fsigen.2012.05.001. Epub 2012 May 26.

PMID:
22633964
45.

Transposon proliferation in an asexual parasitoid.

Kraaijeveld K, Zwanenburg B, Hubert B, Vieira C, De Pater S, Van Alphen JJ, Den Dunnen JT, De Knijff P.

Mol Ecol. 2012 Aug;21(16):3898-906. doi: 10.1111/j.1365-294X.2012.5582.x. Epub 2012 Apr 30.

PMID:
22548357
46.

Dissecting the genetic make-up of North-East Sardinia using a large set of haploid and autosomal markers.

Pardo LM, Piras G, Asproni R, van der Gaag KJ, Gabbas A, Ruiz-Linares A, de Knijff P, Monne M, Rizzu P, Heutink P.

Eur J Hum Genet. 2012 Sep;20(9):956-64. doi: 10.1038/ejhg.2012.22. Epub 2012 Feb 29.

47.

An Aboriginal Australian genome reveals separate human dispersals into Asia.

Rasmussen M, Guo X, Wang Y, Lohmueller KE, Rasmussen S, Albrechtsen A, Skotte L, Lindgreen S, Metspalu M, Jombart T, Kivisild T, Zhai W, Eriksson A, Manica A, Orlando L, De La Vega FM, Tridico S, Metspalu E, Nielsen K, Ávila-Arcos MC, Moreno-Mayar JV, Muller C, Dortch J, Gilbert MT, Lund O, Wesolowska A, Karmin M, Weinert LA, Wang B, Li J, Tai S, Xiao F, Hanihara T, van Driem G, Jha AR, Ricaut FX, de Knijff P, Migliano AB, Gallego Romero I, Kristiansen K, Lambert DM, Brunak S, Forster P, Brinkmann B, Nehlich O, Bunce M, Richards M, Gupta R, Bustamante CD, Krogh A, Foley RA, Lahr MM, Balloux F, Sicheritz-Pontén T, Villems R, Nielsen R, Wang J, Willerslev E.

Science. 2011 Oct 7;334(6052):94-8. doi: 10.1126/science.1211177. Epub 2011 Sep 22.

48.

A genome-wide association study identifies a region at chromosome 12 as a potential susceptibility locus for restenosis after percutaneous coronary intervention.

Sampietro ML, Trompet S, Verschuren JJ, Talens RP, Deelen J, Heijmans BT, de Winter RJ, Tio RA, Doevendans PA, Ganesh SK, Nabel EG, Westra HJ, Franke L, van den Akker EB, Westendorp RG, Zwinderman AH, Kastrati A, Koch W, Slagboom PE, de Knijff P, Jukema JW.

Hum Mol Genet. 2011 Dec 1;20(23):4748-57. doi: 10.1093/hmg/ddr389. Epub 2011 Aug 30.

49.

Epigenetic regulation of the X-chromosomal macrosatellite repeat encoding for the cancer/testis gene CT47.

Balog J, Miller D, Sanchez-Curtailles E, Carbo-Marques J, Block G, Potman M, de Knijff P, Lemmers RJ, Tapscott SJ, van der Maarel SM.

Eur J Hum Genet. 2012 Feb;20(2):185-91. doi: 10.1038/ejhg.2011.150. Epub 2011 Aug 3.

50.

Clonal genetic variation in a Wolbachia-infected asexual wasp: horizontal transmission or historical sex?

Kraaijeveld K, Franco P, de Knijff P, Stouthamer R, van Alphen JJ.

Mol Ecol. 2011 Sep;20(17):3644-52. doi: 10.1111/j.1365-294X.2011.05150.x. Epub 2011 Jun 14.

PMID:
21668807

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