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Items: 1 to 50 of 109

1.

Interlocked Supramolecular Polymers Created by Combination of Halogen- and Hydrogen-Bonding Interactions through Anion-Template Self-Assembly.

Zapata F, González L, Caballero A, Bastida A, Bautista D, Molina P.

J Am Chem Soc. 2018 Feb 14;140(6):2041-2045. doi: 10.1021/jacs.7b12612. Epub 2018 Feb 2.

PMID:
29377686
2.

Pairwise comparisons across species are problematic when analyzing functional genomic data.

Dunn CW, Zapata F, Munro C, Siebert S, Hejnol A.

Proc Natl Acad Sci U S A. 2018 Jan 16;115(3):E409-E417. doi: 10.1073/pnas.1707515115. Epub 2018 Jan 4.

3.

Modulation of the Selectivity in Anions Recognition Processes by Combining Hydrogen- and Halogen-Bonding Interactions.

Zapata F, Benítez-Benítez SJ, Sabater P, Caballero A, Molina P.

Molecules. 2017 Dec 20;22(12). pii: E2273. doi: 10.3390/molecules22122273.

4.

Unraveling the structure and composition of Varadero Reef, an improbable and imperiled coral reef in the Colombian Caribbean.

Pizarro V, Rodríguez SC, López-Victoria M, Zapata FA, Zea S, Galindo-Martínez CT, Iglesias-Prieto R, Pollock J, Medina M.

PeerJ. 2017 Dec 14;5:e4119. doi: 10.7717/peerj.4119. eCollection 2017.

5.

Multi-spectral imaging for the estimation of shooting distances.

Zapata F, López-López M, Amigo JM, García-Ruiz C.

Forensic Sci Int. 2018 Jan;282:80-85. doi: 10.1016/j.forsciint.2017.11.025. Epub 2017 Nov 22.

PMID:
29174514
6.

Continuous-wave infrared optical gain and amplified spontaneous emission at ultralow threshold by colloidal HgTe quantum dots.

Geiregat P, Houtepen AJ, Sagar LK, Infante I, Zapata F, Grigel V, Allan G, Delerue C, Van Thourhout D, Hens Z.

Nat Mater. 2018 Jan;17(1):35-42. doi: 10.1038/nmat5000. Epub 2017 Oct 9.

PMID:
29035357
7.

Issues and Perspectives in Species Delimitation using Phenotypic Data-Atlantean Evolution in Darwin's Finches.

Cadena CD, Zapata F, Jiménez I.

Syst Biol. 2017 Sep 1. doi: 10.1093/sysbio/syx071. [Epub ahead of print]

PMID:
28945876
8.

The discrimination of 72 nitrate, chlorate and perchlorate salts using IR and Raman spectroscopy.

Zapata F, García-Ruiz C.

Spectrochim Acta A Mol Biomol Spectrosc. 2018 Jan 15;189:535-542. doi: 10.1016/j.saa.2017.08.058. Epub 2017 Aug 31.

PMID:
28865354
9.

Draft genome sequence of Exiguobacterium aurantiacum strain PN47 isolate from saline ponds, known as "Salar del Huasco", located in the Altiplano in the North of Chile.

Strahsburger E, Zapata F, Pedroso I, Fuentes D, Tapia P, Ponce R, Valdes J.

Braz J Microbiol. 2018 Jan - Mar;49(1):7-9. doi: 10.1016/j.bjm.2017.03.011. Epub 2017 Jul 18.

10.

Statistical approach for ATR-FTIR screening of semen in sexual evidence.

Gregório I, Zapata F, Torre M, García-Ruiz C.

Talanta. 2017 Nov 1;174:853-857. doi: 10.1016/j.talanta.2017.07.016. Epub 2017 Jul 4.

PMID:
28738663
11.

Anion Recognition Strategies Based on Combined Noncovalent Interactions.

Molina P, Zapata F, Caballero A.

Chem Rev. 2017 Aug 9;117(15):9907-9972. doi: 10.1021/acs.chemrev.6b00814. Epub 2017 Jun 30.

PMID:
28665114
12.

Analysis of different materials subjected to open-air explosions in search of explosive traces by Raman microscopy.

Zapata F, García-Ruiz C.

Forensic Sci Int. 2017 Jun;275:57-64. doi: 10.1016/j.forsciint.2017.02.032. Epub 2017 May 18.

PMID:
28324768
13.

Optomechanical Control of Quantum Yield in Trans-Cis Ultrafast Photoisomerization of a Retinal Chromophore Model.

Valentini A, Rivero D, Zapata F, García-Iriepa C, Marazzi M, Palmeiro R, Fdez Galván I, Sampedro D, Olivucci M, Frutos LM.

Angew Chem Int Ed Engl. 2017 Mar 27;56(14):3842-3846. doi: 10.1002/anie.201611265. Epub 2017 Mar 2.

PMID:
28251753
14.

Revealing the location of semen, vaginal fluid and urine in stained evidence through near infrared chemical imaging.

Zapata F, Ortega-Ojeda FE, García-Ruiz C.

Talanta. 2017 May 1;166:292-299. doi: 10.1016/j.talanta.2017.01.086. Epub 2017 Jan 31.

PMID:
28213237
15.

Analysis of human bodily fluids on superabsorbent pads by ATR-FTIR.

Gregório I, Zapata F, García-Ruiz C.

Talanta. 2017 Jan 1;162:634-640. doi: 10.1016/j.talanta.2016.10.061. Epub 2016 Oct 15.

PMID:
27837882
16.

Progressing the analysis of Improvised Explosive Devices: Comparative study for trace detection of explosive residues in handprints by Raman spectroscopy and liquid chromatography.

Zapata F, de la Ossa MÁF, Gilchrist E, Barron L, García-Ruiz C.

Talanta. 2016 Dec 1;161:219-227. doi: 10.1016/j.talanta.2016.05.057. Epub 2016 Aug 2.

PMID:
27769399
17.

Aquatic fate of a double-stranded RNA in a sediment---water system following an over-water application.

Fischer JR, Zapata F, Dubelman S, Mueller GM, Uffman JP, Jiang C, Jensen PD, Levine SL.

Environ Toxicol Chem. 2017 Mar;36(3):727-734. doi: 10.1002/etc.3585. Epub 2016 Sep 19.

PMID:
27530554
18.

Comparative Study of Charge-Assisted Hydrogen- and Halogen-Bonding Capabilities in Solution of Two-Armed Imidazolium Receptors toward Oxoanions.

Sabater P, Zapata F, Caballero A, de la Visitación N, Alkorta I, Elguero J, Molina P.

J Org Chem. 2016 Sep 2;81(17):7448-58. doi: 10.1021/acs.joc.6b01146. Epub 2016 Aug 11.

PMID:
27490011
19.

Characterizing a novel and sensitive method to measure dsRNA in soil.

Fischer JR, Zapata F, Dubelman S, Mueller GM, Jensen PD, Levine SL.

Chemosphere. 2016 Oct;161:319-324. doi: 10.1016/j.chemosphere.2016.07.014. Epub 2016 Jul 19.

PMID:
27441991
20.

Determination of Nanogram Microparticles from Explosives after Real Open-Air Explosions by Confocal Raman Microscopy.

Zapata F, García-Ruiz C.

Anal Chem. 2016 Jul 5;88(13):6726-33. doi: 10.1021/acs.analchem.6b00927. Epub 2016 Jun 22.

PMID:
27281604
21.

2,4,5-Trimethylimidazolium Scaffold for Anion Recognition Receptors Acting Through Charge-Assisted Aliphatic and Aromatic C-H Interactions.

Sabater P, Zapata F, Caballero A, Fernández I, Ramirez de Arellano C, Molina P.

J Org Chem. 2016 May 6;81(9):3790-8. doi: 10.1021/acs.joc.6b00468. Epub 2016 Apr 21.

PMID:
27078523
22.

Host-Guest Chemistry: Oxoanion Recognition Based on Combined Charge-Assisted C-H or Halogen-Bonding Interactions and Anion⋅⋅⋅Anion Interactions Mediated by Hydrogen Bonds.

González L, Zapata F, Caballero A, Molina P, Ramírez de Arellano C, Alkorta I, Elguero J.

Chemistry. 2016 May 23;22(22):7533-44. doi: 10.1002/chem.201600379. Epub 2016 Apr 9.

PMID:
27061729
23.

Differentiation of Body Fluid Stains on Fabrics Using External Reflection Fourier Transform Infrared Spectroscopy (FT-IR) and Chemometrics.

Zapata F, de la Ossa MÁ, García-Ruiz C.

Appl Spectrosc. 2016 Apr;70(4):654-65. doi: 10.1177/0003702816631303. Epub 2016 Feb 19.

PMID:
26896150
24.

An Integrated Perspective on Phylogenetic Workflows.

Guang A, Zapata F, Howison M, Lawrence CE, Dunn CW.

Trends Ecol Evol. 2016 Feb;31(2):116-26. doi: 10.1016/j.tree.2015.12.007. Epub 2016 Jan 5. Review.

PMID:
26775796
25.

Study of consumer fireworks post-blast residues by ATR-FTIR.

Martín-Alberca C, Zapata F, Carrascosa H, Ortega-Ojeda FE, García-Ruiz C.

Talanta. 2016 Mar;149:257-265. doi: 10.1016/j.talanta.2015.11.070. Epub 2015 Dec 2.

PMID:
26717839
26.

Mechanical Forces Alter Conical Intersections Topology.

Rivero D, Valentini A, Fernández-González MÁ, Zapata F, García-Iriepa C, Sampedro D, Palmeiro R, Frutos LM.

J Chem Theory Comput. 2015 Aug 11;11(8):3740-5. doi: 10.1021/acs.jctc.5b00375.

PMID:
26574456
27.

Molcas 8: New capabilities for multiconfigurational quantum chemical calculations across the periodic table.

Aquilante F, Autschbach J, Carlson RK, Chibotaru LF, Delcey MG, De Vico L, Fdez Galván I, Ferré N, Frutos LM, Gagliardi L, Garavelli M, Giussani A, Hoyer CE, Li Manni G, Lischka H, Ma D, Malmqvist PÅ, Müller T, Nenov A, Olivucci M, Pedersen TB, Peng D, Plasser F, Pritchard B, Reiher M, Rivalta I, Schapiro I, Segarra-Martí J, Stenrup M, Truhlar DG, Ungur L, Valentini A, Vancoillie S, Veryazov V, Vysotskiy VP, Weingart O, Zapata F, Lindh R.

J Comput Chem. 2016 Feb 15;37(5):506-41. doi: 10.1002/jcc.24221. Epub 2015 Nov 12.

PMID:
26561362
28.

Conceptual basis for an integrated system for the management of a protected area. Examples from its application in a mediterranean area.

Cornejo E, Fungairiño SG, Barandica JM, Serrano JM, Zorrilla JM, Gómez T, Zapata FJ, Acosta FJ.

J Environ Manage. 2016 Jan 15;166:237-49. doi: 10.1016/j.jenvman.2015.10.029. Epub 2015 Oct 26.

PMID:
26513322
29.

Phylogenomic Analyses Support Traditional Relationships within Cnidaria.

Zapata F, Goetz FE, Smith SA, Howison M, Siebert S, Church SH, Sanders SM, Ames CL, McFadden CS, France SC, Daly M, Collins AG, Haddock SH, Dunn CW, Cartwright P.

PLoS One. 2015 Oct 14;10(10):e0139068. doi: 10.1371/journal.pone.0139068. eCollection 2015.

30.

Stem cells in Nanomia bijuga (Siphonophora), a colonial animal with localized growth zones.

Siebert S, Goetz FE, Church SH, Bhattacharyya P, Zapata F, Haddock SH, Dunn CW.

Evodevo. 2015 May 27;6:22. doi: 10.1186/s13227-015-0018-2. eCollection 2015.

31.

Dual Role of the 1,2,3-Triazolium Ring as a Hydrogen-Bond Donor and Anion-π Receptor in Anion-Recognition Processes.

Zapata F, Gonzalez L, Caballero A, Alkorta I, Elguero J, Molina P.

Chemistry. 2015 Jun 26;21(27):9797-808. doi: 10.1002/chem.201500231. Epub 2015 Jun 1.

PMID:
26031665
32.

Definition and determination of the triplet-triplet energy transfer reaction coordinate.

Zapata F, Marazzi M, Castaño O, Acuña AU, Frutos LM.

J Chem Phys. 2014 Jan 21;140(3):034102. doi: 10.1063/1.4861560.

PMID:
25669358
33.

To move or to evolve: contrasting patterns of intercontinental connectivity and climatic niche evolution in "Terebinthaceae" (Anacardiaceae and Burseraceae).

Weeks A, Zapata F, Pell SK, Daly DC, Mitchell JD, Fine PV.

Front Genet. 2014 Nov 28;5:409. doi: 10.3389/fgene.2014.00409. eCollection 2014.

34.

A case of oxoanion recognition based on combined cationic and neutral C-H hydrogen bond interactions.

Zapata F, Sabater P, Caballero A, Molina P.

Org Biomol Chem. 2015 Feb 7;13(5):1339-46. doi: 10.1039/c4ob02288b.

PMID:
25429740
35.

Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda.

Zapata F, Wilson NG, Howison M, Andrade SC, Jörger KM, Schrödl M, Goetz FE, Giribet G, Dunn CW.

Proc Biol Sci. 2014 Nov 7;281(1794):20141739. doi: 10.1098/rspb.2014.1739.

36.

Iodide-induced shuttling of a halogen- and hydrogen-bonding two-station rotaxane.

Caballero A, Swan L, Zapata F, Beer PD.

Angew Chem Int Ed Engl. 2014 Oct 27;53(44):11854-8. doi: 10.1002/anie.201407580. Epub 2014 Sep 11.

PMID:
25213038
37.

Open bis(triazolium) structural motifs as a benchmark to study combined hydrogen- and halogen-bonding interactions in oxoanion recognition processes.

Zapata F, Caballero A, Molina P, Alkorta I, Elguero J.

J Org Chem. 2014 Aug 1;79(15):6959-69. doi: 10.1021/jo501061z. Epub 2014 Jul 23.

PMID:
25020191
38.

Bayesian genome assembly and assessment by markov chain monte carlo sampling.

Howison M, Zapata F, Edwards EJ, Dunn CW.

PLoS One. 2014 Jun 26;9(6):e99497. doi: 10.1371/journal.pone.0099497. eCollection 2014.

39.

Age and growth of the round stingray Urotrygon rogersi, a particularly fast-growing and short-lived elasmobranch.

Mejía-Falla PA, Cortés E, Navia AF, Zapata FA.

PLoS One. 2014 Apr 28;9(4):e96077. doi: 10.1371/journal.pone.0096077. eCollection 2014.

40.

Investigating processes of neotropical rain forest tree diversification by examining the evolution and historical biogeography of the Protieae (Burseraceae).

Fine PV, Zapata F, Daly DC.

Evolution. 2014 Jul;68(7):1988-2004. doi: 10.1111/evo.12414. Epub 2014 May 5.

PMID:
24689871
41.

Environmental fate of double-stranded RNA in agricultural soils.

Dubelman S, Fischer J, Zapata F, Huizinga K, Jiang C, Uffman J, Levine S, Carson D.

PLoS One. 2014 Mar 27;9(3):e93155. doi: 10.1371/journal.pone.0093155. eCollection 2014.

42.

Discovery of anion-π interactions in the recognition mechanism of inorganic anions by 1,2,3-triazolium rings.

Caballero A, Zapata F, González L, Molina P, Alkorta I, Elguero J.

Chem Commun (Camb). 2014 May 11;50(36):4680-2. doi: 10.1039/c4cc00169a.

PMID:
24525718
43.

Toward an Optomechanical Control of Photoswitches by Tuning Their Spectroscopical Properties: Structural and Dynamical Insights into Azobenzene.

Zapata F, Fernández-González MÁ, Rivero D, Álvarez Á, Marazzi M, Frutos LM.

J Chem Theory Comput. 2014 Jan 14;10(1):312-23. doi: 10.1021/ct4007629.

PMID:
26579912
44.

Revisiting the Nonadiabatic Process in 1,2-Dioxetane.

Farahani P, Roca-Sanjuán D, Zapata F, Lindh R.

J Chem Theory Comput. 2013 Dec 10;9(12):5404-11. doi: 10.1021/ct4007844. Epub 2013 Nov 22.

PMID:
26592278
45.

Agalma: an automated phylogenomics workflow.

Dunn CW, Howison M, Zapata F.

BMC Bioinformatics. 2013 Nov 19;14:330. doi: 10.1186/1471-2105-14-330.

46.

Toward a statistically explicit understanding of de novo sequence assembly.

Howison M, Zapata F, Dunn CW.

Bioinformatics. 2013 Dec 1;29(23):2959-63. doi: 10.1093/bioinformatics/btt525. Epub 2013 Sep 10. Review.

PMID:
24021385
47.

Lanthanide cation-templated synthesis of rotaxanes.

Zapata F, Blackburn OA, Langton MJ, Faulkner S, Beer PD.

Chem Commun (Camb). 2013 Sep 25;49(74):8157-9. doi: 10.1039/c3cc45404e.

PMID:
23925587
48.

Index of suspicion.

Tarchichi T, Wong K, Fisher MM, Palomo P, Zapata F, Bawle EV.

Pediatr Rev. 2013 Jun;34(6):280-4. doi: 10.1542/pir.34-6-280.

PMID:
23729777
49.

Diversification of the monoterpene synthase gene family (TPSb) in Protium, a highly diverse genus of tropical trees.

Zapata F, Fine PV.

Mol Phylogenet Evol. 2013 Sep;68(3):432-42. doi: 10.1016/j.ympev.2013.04.024. Epub 2013 May 9.

PMID:
23665037
50.

Chiral Hydrogen Bond Environment Providing Unidirectional Rotation in Photoactive Molecular Motors.

García-Iriepa C, Marazzi M, Zapata F, Valentini A, Sampedro D, Frutos LM.

J Phys Chem Lett. 2013 May 2;4(9):1389-96. doi: 10.1021/jz302152v. Epub 2013 Apr 10.

PMID:
26282290

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