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ANKRD16 prevents neuron loss caused by an editing-defective tRNA synthetase.

Vo MN, Terrey M, Lee JW, Roy B, Moresco JJ, Sun L, Fu H, Liu Q, Weber TG, Yates JR 3rd, Fredrick K, Schimmel P, Ackerman SL.

Nature. 2018 May 16. doi: 10.1038/s41586-018-0137-8. [Epub ahead of print]


PML Recruits TET2 to Regulate DNA Modification and Cell Proliferation in Response to Chemotherapeutic Agent.

Song C, Wang L, Wu X, Wang K, Xie D, Xiao Q, Li S, Jiang K, Liao L, Yates JR 3rd, Lee JD, Yang Q.

Cancer Res. 2018 May 15;78(10):2475-2489. doi: 10.1158/0008-5472.CAN-17-3091. Epub 2018 May 7.


Spliceosome Profiling Visualizes Operations of a Dynamic RNP at Nucleotide Resolution.

Burke JE, Longhurst AD, Merkurjev D, Sales-Lee J, Rao B, Moresco JJ, Yates JR 3rd, Li JJ, Madhani HD.

Cell. 2018 May 3;173(4):1014-1030.e17. doi: 10.1016/j.cell.2018.03.020.


Global site-specific analysis of glycoprotein N-glycan processing.

Cao L, Diedrich JK, Ma Y, Wang N, Pauthner M, Park SR, Delahunty CM, McLellan JS, Burton DR, Yates JR, Paulson JC.

Nat Protoc. 2018 Jun;13(6):1196-1212. doi: 10.1038/nprot.2018.024. Epub 2018 May 3.


Content Is King: Databases Preserve the Collective Information of Science.

Yates JR 3rd.

J Biomol Tech. 2018 Apr;29(1):1-3. doi: 10.7171/jbt.18-2901-002. Epub 2018 Mar 22.


Effects of N-methyl-d-aspartate receptor (NMDAr) uncompetitive antagonists in a delay discounting paradigm using a concurrent-chains procedure.

Yates JR, Gunkel BT, Rogers KK, Breitenstein KA, Hughes MN, Johnson AB, Sharpe SM.

Behav Brain Res. 2018 Mar 28. pii: S0166-4328(17)31877-6. doi: 10.1016/j.bbr.2018.03.039. [Epub ahead of print]


PACOM: A Versatile Tool for Integrating, Filtering, Visualizing, and Comparing Multiple Large Mass Spectrometry Proteomics Data Sets.

Martínez-Bartolomé S, Medina-Aunon JA, López-García MÁ, González-Tejedo C, Prieto G, Navajas R, Salazar-Donate E, Fernández-Costa C, Yates JR 3rd, Albar JP.

J Proteome Res. 2018 Apr 6;17(4):1547-1558. doi: 10.1021/acs.jproteome.7b00858. Epub 2018 Mar 28.


A proteomic insight into vitellogenesis during tick ovary maturation.

Xavier MA, Tirloni L, Pinto AFM, Diedrich JK, Yates JR 3rd, Mulenga A, Logullo C, da Silva Vaz I Jr., Seixas A, Termignoni C.

Sci Rep. 2018 Mar 16;8(1):4698. doi: 10.1038/s41598-018-23090-2.


Publisher Correction: Double mimicry evades tRNA synthetase editing by toxic vegetable-sourced non-proteinogenic amino acid.

Song Y, Zhou H, Vo MN, Shi Y, Nawaz MH, Vargas-Rodriguez O, Diedrich JK, Yates JR 3rd, Kishi S, Musier-Forsyth K, Schimmel P.

Nat Commun. 2018 Mar 13;9(1):1113. doi: 10.1038/s41467-018-03594-1.


Interactome analysis of the lymphocytic choriomeningitis virus nucleoprotein in infected cells reveals ATPase Na+/K+ transporting subunit Alpha 1 and prohibitin as host-cell factors involved in the life cycle of mammarenaviruses.

Iwasaki M, Minder P, Caì Y, Kuhn JH, Yates JR 3rd, Torbett BE, de la Torre JC.

PLoS Pathog. 2018 Feb 20;14(2):e1006892. doi: 10.1371/journal.ppat.1006892. eCollection 2018 Feb.


Increased proteomic complexity in Drosophila hybrids during development.

Bamberger C, Martínez-Bartolomé S, Montgomery M, Lavallée-Adam M, Yates JR 3rd.

Sci Adv. 2018 Feb 7;4(2):eaao3424. doi: 10.1126/sciadv.aao3424. eCollection 2018 Feb.


The Speed of Publication.

Yates JR 3rd.

J Proteome Res. 2018 Mar 2;17(3):935. doi: 10.1021/acs.jproteome.8b00044. Epub 2018 Feb 8. No abstract available.


Role of the visual experience-dependent nascent proteome in neuronal plasticity.

Liu HH, McClatchy DB, Schiapparelli L, Shen W, Yates JR 3rd, Cline HT.

Elife. 2018 Feb 7;7. pii: e33420. doi: 10.7554/eLife.33420.


Tick-Host Range Adaptation: Changes in Protein Profiles in Unfed Adult Ixodes scapularis and Amblyomma americanum Saliva Stimulated to Feed on Different Hosts.

Tirloni L, Kim TK, Pinto AFM, Yates JR 3rd, da Silva Vaz I Jr., Mulenga A.

Front Cell Infect Microbiol. 2017 Dec 19;7:517. doi: 10.3389/fcimb.2017.00517. eCollection 2017.


Dissecting drug effects in preclinical models of impulsive choice: emphasis on glutamatergic compounds.

Yates JR.

Psychopharmacology (Berl). 2018 Mar;235(3):607-626. doi: 10.1007/s00213-017-4825-0. Epub 2018 Jan 6. Review.


Double mimicry evades tRNA synthetase editing by toxic vegetable-sourced non-proteinogenic amino acid.

Song Y, Zhou H, Vo MN, Shi Y, Nawaz MH, Vargas-Rodriguez O, Diedrich JK, Yates JR, Kishi S, Musier-Forsyth K, Schimmel P.

Nat Commun. 2017 Dec 22;8(1):2281. doi: 10.1038/s41467-017-02201-z. Erratum in: Nat Commun. 2018 Mar 13;9(1):1113.


Identification and characterization of proteins in the Amblyomma americanum tick cement cone.

Hollmann T, Kim TK, Tirloni L, Radulović ŽM, Pinto AFM, Diedrich JK, Yates JR 3rd, da Silva Vaz I Jr., Mulenga A.

Int J Parasitol. 2018 Mar;48(3-4):211-224. doi: 10.1016/j.ijpara.2017.08.018. Epub 2017 Dec 16.


Tin chemical shift anisotropy in tin dioxide: On ambiguity of CSA asymmetry derived from MAS spectra.

Aliev AE, Bartók AP, Yates JR.

Solid State Nucl Magn Reson. 2018 Feb;89:1-10. doi: 10.1016/j.ssnmr.2017.11.002. Epub 2017 Nov 28.


Amyloid Accumulation Drives Proteome-wide Alterations in Mouse Models of Alzheimer's Disease-like Pathology.

Savas JN, Wang YZ, DeNardo LA, Martinez-Bartolome S, McClatchy DB, Hark TJ, Shanks NF, Cozzolino KA, Lavallée-Adam M, Smukowski SN, Park SK, Kelly JW, Koo EH, Nakagawa T, Masliah E, Ghosh A, Yates JR 3rd.

Cell Rep. 2017 Nov 28;21(9):2614-2627. doi: 10.1016/j.celrep.2017.11.009.


Environmental enrichment and drug value: a behavioral economic analysis in male rats.

Yates JR, Bardo MT, Beckmann JS.

Addict Biol. 2017 Nov 27. doi: 10.1111/adb.12581. [Epub ahead of print]


S-Nitrosylation of PINK1 Attenuates PINK1/Parkin-Dependent Mitophagy in hiPSC-Based Parkinson's Disease Models.

Oh CK, Sultan A, Platzer J, Dolatabadi N, Soldner F, McClatchy DB, Diedrich JK, Yates JR 3rd, Ambasudhan R, Nakamura T, Jaenisch R, Lipton SA.

Cell Rep. 2017 Nov 21;21(8):2171-2182. doi: 10.1016/j.celrep.2017.10.068.


Ist1 regulates ESCRT-III assembly and function during multivesicular endosome biogenesis in Caenorhabditis elegans embryos.

Frankel EB, Shankar R, Moresco JJ, Yates JR 3rd, Volkmann N, Audhya A.

Nat Commun. 2017 Nov 13;8(1):1439. doi: 10.1038/s41467-017-01636-8.


A post-transcriptional program coordinated by CSDE1 prevents intrinsic neural differentiation of human embryonic stem cells.

Ju Lee H, Bartsch D, Xiao C, Guerrero S, Ahuja G, Schindler C, Moresco JJ, Yates JR 3rd, Gebauer F, Bazzi H, Dieterich C, Kurian L, Vilchez D.

Nat Commun. 2017 Nov 13;8(1):1456. doi: 10.1038/s41467-017-01744-5.


Profiling of Protein O-GlcNAcylation in Murine CD8+ Effector- and Memory-like T Cells.

Lopez Aguilar A, Gao Y, Hou X, Lauvau G, Yates JR, Wu P.

ACS Chem Biol. 2017 Dec 15;12(12):3031-3038. doi: 10.1021/acschembio.7b00869. Epub 2017 Nov 10.


High infestation levels of Schizotetranychus oryzae severely affects rice metabolism.

Blasi ÉAR, Buffon G, Rativa AGS, Lopes MCB, Berger M, Santi L, Lavallée-Adam M, Yates JR 3rd, Schwambach J, Beys-da-Silva WO, Sperotto RA.

J Plant Physiol. 2017 Dec;219:100-111. doi: 10.1016/j.jplph.2017.10.005. Epub 2017 Oct 28.


Expression profile of Rhipicephalus microplus vitellogenin receptor during oogenesis.

Seixas A, Alzugaray MF, Tirloni L, Parizi LF, Pinto AFM, Githaka NW, Konnai S, Ohashi K, Yates JR III, Termignoni C, da Silva Vaz I Jr.

Ticks Tick Borne Dis. 2018 Jan;9(1):72-81. doi: 10.1016/j.ttbdis.2017.10.006. Epub 2017 Oct 16.


Visualising crystal packing interactions in solid-state NMR: Concepts and applications.

Zilka M, Sturniolo S, Brown SP, Yates JR.

J Chem Phys. 2017 Oct 14;147(14):144203. doi: 10.1063/1.4996750.


Innovations in Publishing: Prepublication of Manuscripts on Preprint Servers.

Yates JR 3rd.

J Proteome Res. 2017 Nov 3;16(11):3953. doi: 10.1021/acs.jproteome.7b00674. Epub 2017 Oct 5. No abstract available.


Next Generation Proteomic Pipeline for Chromosome-Based Proteomic Research Using NeXtProt and GENCODE Databases.

Hwang H, Park GW, Park JY, Lee HK, Lee JY, Jeong JE, Park SR, Yates JR 3rd, Kwon KH, Park YM, Lee HJ, Paik YK, Kim JY, Yoo JS.

J Proteome Res. 2017 Dec 1;16(12):4425-4434. doi: 10.1021/acs.jproteome.7b00223. Epub 2017 Oct 13.


Effects of intra-accumbal administration of dopamine and ionotropic glutamate receptor drugs on delay discounting performance in rats.

Yates JR, Bardo MT.

Behav Neurosci. 2017 Oct;131(5):392-405. doi: 10.1037/bne0000214.


Ab initio random structure searching of organic molecular solids: assessment and validation against experimental data.

Zilka M, Dudenko DV, Hughes CE, Williams PA, Sturniolo S, Franks WT, Pickard CJ, Yates JR, Harris KDM, Brown SP.

Phys Chem Chem Phys. 2017 Oct 4;19(38):25949-25960. doi: 10.1039/c7cp04186a.


Proteomic Analysis of Peripheral Blood Mononuclear Cells after a High-Fat, High-Carbohydrate Meal with Orange Juice.

Chaves DFS, Carvalho PC, Brasili E, Rogero MM, Hassimotto NA, Diedrich JK, Moresco JJ, Yates JR 3rd, Lajolo FM.

J Proteome Res. 2017 Nov 3;16(11):4086-4092. doi: 10.1021/acs.jproteome.7b00476.


Protein arginylation targets alpha synuclein, facilitates normal brain health, and prevents neurodegeneration.

Wang J, Han X, Leu NA, Sterling S, Kurosaka S, Fina M, Lee VM, Dong DW, Yates JR 3rd, Kashina A.

Sci Rep. 2017 Sep 12;7(1):11323. doi: 10.1038/s41598-017-11713-z.


Quantitative Analysis of the Proteome Response to the Histone Deacetylase Inhibitor (HDACi) Vorinostat in Niemann-Pick Type C1 disease.

Subramanian K, Rauniyar N, Lavalleé-Adam M, Yates JR 3rd, Balch WE.

Mol Cell Proteomics. 2017 Nov;16(11):1938-1957. doi: 10.1074/mcp.M116.064949. Epub 2017 Aug 31.


TFG facilitates outer coat disassembly on COPII transport carriers to promote tethering and fusion with ER-Golgi intermediate compartments.

Hanna MG 4th, Block S, Frankel EB, Hou F, Johnson A, Yuan L, Knight G, Moresco JJ, Yates JR 3rd, Ashton R, Schekman R, Tong Y, Audhya A.

Proc Natl Acad Sci U S A. 2017 Sep 12;114(37):E7707-E7716. doi: 10.1073/pnas.1709120114. Epub 2017 Aug 29. Erratum in: Proc Natl Acad Sci U S A. 2017 Sep 25;:.


Proteasome activity regulates CD8+ T lymphocyte metabolism and fate specification.

Widjaja CE, Olvera JG, Metz PJ, Phan AT, Savas JN, de Bruin G, Leestemaker Y, Berkers CR, de Jong A, Florea BI, Fisch K, Lopez J, Kim SH, Garcia DA, Searles S, Bui JD, Chang AN, Yates JR 3rd, Goldrath AW, Overkleeft HS, Ovaa H, Chang JT.

J Clin Invest. 2017 Oct 2;127(10):3609-3623. doi: 10.1172/JCI90895. Epub 2017 Aug 28.


Incomplete cauda equina syndrome secondary to haemorrhage within a Tarlov cyst.

Yates JR, Jones CS, Stokes OM, Hutton M.

BMJ Case Rep. 2017 Aug 7;2017. pii: bcr-2017-219890. doi: 10.1136/bcr-2017-219890.


Association of C-Reactive Protein Genetic Polymorphisms With Late Age-Related Macular Degeneration.

Cipriani V, Hogg RE, Sofat R, Moore AT, Webster AR, Yates JRW, Fletcher AE; European Eye (EUREYE) Study Group.

JAMA Ophthalmol. 2017 Sep 1;135(9):909-916. doi: 10.1001/jamaophthalmol.2017.2191.


Glycolytic Enzymes Coalesce in G Bodies under Hypoxic Stress.

Jin M, Fuller GG, Han T, Yao Y, Alessi AF, Freeberg MA, Roach NP, Moresco JJ, Karnovsky A, Baba M, Yates JR 3rd, Gitler AD, Inoki K, Klionsky DJ, Kim JK.

Cell Rep. 2017 Jul 25;20(4):895-908. doi: 10.1016/j.celrep.2017.06.082.


CKS Proteins Promote Checkpoint Recovery by Stimulating Phosphorylation of Treslin.

Mu R, Tat J, Zamudio R, Zhang Y, Yates JR 3rd, Kumagai A, Dunphy WG, Reed SI.

Mol Cell Biol. 2017 Sep 26;37(20). pii: e00344-17. doi: 10.1128/MCB.00344-17. Print 2017 Oct 15.


An Mtr4/ZFC3H1 complex facilitates turnover of unstable nuclear RNAs to prevent their cytoplasmic transport and global translational repression.

Ogami K, Richard P, Chen Y, Hoque M, Li W, Moresco JJ, Yates JR 3rd, Tian B, Manley JL.

Genes Dev. 2017 Jul 21. doi: 10.1101/gad.302604.117. [Epub ahead of print]


Early-life risperidone enhances locomotor responses to amphetamine during adulthood.

Lee Stubbeman B, Brown CJ, Yates JR, Bardgett ME.

Eur J Pharmacol. 2017 Oct 5;812:256-263. doi: 10.1016/j.ejphar.2017.07.025. Epub 2017 Jul 14.


Cleavage of the SUN-domain protein Mps3 at its N-terminus regulates centrosome disjunction in budding yeast meiosis.

Li P, Jin H, Koch BA, Abblett RL, Han X, Yates JR 3rd, Yu HG.

PLoS Genet. 2017 Jun 13;13(6):e1006830. doi: 10.1371/journal.pgen.1006830. eCollection 2017 Jun.


Identification of Microprotein-Protein Interactions via APEX Tagging.

Chu Q, Rathore A, Diedrich JK, Donaldson CJ, Yates JR 3rd, Saghatelian A.

Biochemistry. 2017 Jul 5;56(26):3299-3306. doi: 10.1021/acs.biochem.7b00265. Epub 2017 Jun 7.


The protein kinase MBK-1 contributes to lifespan extension in daf-2 mutant and germline-deficient Caenorhabditis elegans.

Mack HID, Zhang P, Fonslow BR, Yates JR.

Aging (Albany NY). 2017 May 25;9(5):1414-1432. doi: 10.18632/aging.101244.


Hsc70 chaperone activity is required for the cytosolic slow axonal transport of synapsin.

Ganguly A, Han X, Das U, Wang L, Loi J, Sun J, Gitler D, Caillol G, Leterrier C, Yates JR 3rd, Roy S.

J Cell Biol. 2017 Jul 3;216(7):2059-2074. doi: 10.1083/jcb.201604028. Epub 2017 May 30.


Corrigendum: Targeting BMK1 Impairs the Drug Resistance to Combined Inhibition of BRAF and MEK1/2 in Melanoma.

Song C, Wang L, Xu Q, Wang K, Xie D, Yu Z, Jiang K, Liao L, Yates JR, Lee JD, Yang Q.

Sci Rep. 2017 May 26;7:46833. doi: 10.1038/srep46833.


Matchmaking in Proteomics.

Yates JR.

Clin Chem. 2017 Jul;63(7):1297-1298. doi: 10.1373/clinchem.2016.267856. Epub 2017 May 8. Review. No abstract available.


Exploring Systematic Discrepancies in DFT Calculations of Chlorine Nuclear Quadrupole Couplings.

Socha O, Hodgkinson P, Widdifield CM, Yates JR, Dračínský M.

J Phys Chem A. 2017 Jun 1;121(21):4103-4113. doi: 10.1021/acs.jpca.7b02810. Epub 2017 May 18.


MEF2D haploinsufficiency downregulates the NRF2 pathway and renders photoreceptors susceptible to light-induced oxidative stress.

Nagar S, Noveral SM, Trudler D, Lopez KM, McKercher SR, Han X, Yates JR 3rd, Piña-Crespo JC, Nakanishi N, Satoh T, Okamoto SI, Lipton SA.

Proc Natl Acad Sci U S A. 2017 May 16;114(20):E4048-E4056. doi: 10.1073/pnas.1613067114. Epub 2017 May 1.

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