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Items: 1 to 50 of 127

1.

Complete Genome Sequence of the Environmental Burkholderia pseudomallei Sequence Type 131 Isolate MSHR1435, Associated with a Chronic Melioidosis Infection.

Sahl JW, Mayo M, Price EP, Sarovich DS, Kaestli M, Pearson T, Williamson CHD, Nottingham R, Sheridan K, Wagner DM, Currie BJ, Keim P.

Genome Announc. 2018 Mar 15;6(11). pii: e00072-18. doi: 10.1128/genomeA.00072-18.

2.

Low cost, low tech SNP genotyping tools for resource-limited areas: Plague in Madagascar as a model.

Mitchell CL, Andrianaivoarimanana V, Colman RE, Busch J, Hornstra-O'Neill H, Keim PS, Wagner DM, Rajerison M, Birdsell DN.

PLoS Negl Trop Dis. 2017 Dec 11;11(12):e0006077. doi: 10.1371/journal.pntd.0006077. eCollection 2017 Dec.

3.

Phylogeographic, genomic, and meropenem susceptibility analysis of Burkholderia ubonensis.

Price EP, Sarovich DS, Webb JR, Hall CM, Jaramillo SA, Sahl JW, Kaestli M, Mayo M, Harrington G, Baker AL, Sidak-Loftis LC, Settles EW, Lummis M, Schupp JM, Gillece JD, Tuanyok A, Warner J, Busch JD, Keim P, Currie BJ, Wagner DM.

PLoS Negl Trop Dis. 2017 Sep 14;11(9):e0005928. doi: 10.1371/journal.pntd.0005928. eCollection 2017 Sep.

4.

Temporal phylogeography of Yersinia pestis in Madagascar: Insights into the long-term maintenance of plague.

Vogler AJ, Andrianaivoarimanana V, Telfer S, Hall CM, Sahl JW, Hepp CM, Centner H, Andersen G, Birdsell DN, Rahalison L, Nottingham R, Keim P, Wagner DM, Rajerison M.

PLoS Negl Trop Dis. 2017 Sep 5;11(9):e0005887. doi: 10.1371/journal.pntd.0005887. eCollection 2017 Sep.

5.

Protein abundances can distinguish between naturally-occurring and laboratory strains of Yersinia pestis, the causative agent of plague.

Merkley ED, Sego LH, Lin A, Leiser OP, Kaiser BLD, Adkins JN, Keim PS, Wagner DM, Kreuzer HW.

PLoS One. 2017 Aug 30;12(8):e0183478. doi: 10.1371/journal.pone.0183478. eCollection 2017.

6.

Notes from the Field: Fatal Pneumonic Tularemia Associated with Dog Exposure - Arizona, June 2016.

Yaglom H, Rodriguez E, Gaither M, Schumacher M, Kwit N, Nelson C, Terriquez J, Vinocur J, Birdsell D, Wagner DM, Petersen J, Kugeler K.

MMWR Morb Mortal Wkly Rep. 2017 Aug 25;66(33):891. doi: 10.15585/mmwr.mm6633a5. No abstract available.

7.

Feasibility study of entrance and exit dose measurements at the contra lateral breast with alanine/electron spin resonance dosimetry in volumetric modulated radiotherapy of breast cancer.

Wagner DM, Hüttenrauch P, Anton M, von Voigts-Rhetz P, Zink K, Wolff HA.

Phys Med Biol. 2017 Jul 7;62(13):5462-5472. doi: 10.1088/1361-6560/aa6ee2. Epub 2017 Apr 24.

PMID:
28436921
8.

NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats.

Sahl JW, Lemmer D, Travis J, Schupp JM, Gillece JD, Aziz M, Driebe EM, Drees KP, Hicks ND, Williamson CHD, Hepp CM, Smith DE, Roe C, Engelthaler DM, Wagner DM, Keim P.

Microb Genom. 2016 Aug 25;2(8):e000074. doi: 10.1099/mgen.0.000074. eCollection 2016 Aug.

9.

Long-range dispersal moved Francisella tularensis into Western Europe from the East.

Dwibedi C, Birdsell D, Lärkeryd A, Myrtennäs K, Öhrman C, Nilsson E, Karlsson E, Hochhalter C, Rivera A, Maltinsky S, Bayer B, Keim P, Scholz HC, Tomaso H, Wittwer M, Beuret C, Schuerch N, Pilo P, Hernández Pérez M, Rodriguez-Lazaro D, Escudero R, Anda P, Forsman M, Wagner DM, Larsson P, Johansson A.

Microb Genom. 2016 Dec 12;2(12):e000100. doi: 10.1099/mgen.0.000100. eCollection 2016 Dec.

10.

Burkholderia humptydooensis sp. nov., a New Species Related to Burkholderia thailandensis and the Fifth Member of the Burkholderia pseudomallei Complex.

Tuanyok A, Mayo M, Scholz H, Hall CM, Allender CJ, Kaestli M, Ginther J, Spring-Pearson S, Bollig MC, Stone JK, Settles EW, Busch JD, Sidak-Loftis L, Sahl JW, Thomas A, Kreutzer L, Georgi E, Gee JE, Bowen RA, Ladner JT, Lovett S, Koroleva G, Palacios G, Wagner DM, Currie BJ, Keim P.

Appl Environ Microbiol. 2017 Feb 15;83(5). pii: e02802-16. doi: 10.1128/AEM.02802-16. Print 2017 Mar 1.

11.

VNTR diversity in Yersinia pestis isolates from an animal challenge study reveals the potential for in vitro mutations during laboratory cultivation.

Vogler AJ, Nottingham R, Busch JD, Sahl JW, Shuey MM, Foster JT, Schupp JM, Smith SR, Rocke TE, Keim P, Wagner DM.

Infect Genet Evol. 2016 Nov;45:297-302. doi: 10.1016/j.meegid.2016.09.019. Epub 2016 Sep 21.

PMID:
27664903
12.

More than 50% of Clostridium difficile Isolates from Pet Dogs in Flagstaff, USA, Carry Toxigenic Genotypes.

Stone NE, Sidak-Loftis LC, Sahl JW, Vazquez AJ, Wiggins KB, Gillece JD, Hicks ND, Schupp JM, Busch JD, Keim P, Wagner DM.

PLoS One. 2016 Oct 10;11(10):e0164504. doi: 10.1371/journal.pone.0164504. eCollection 2016.

13.

A Bacillus anthracis Genome Sequence from the Sverdlovsk 1979 Autopsy Specimens.

Sahl JW, Pearson T, Okinaka R, Schupp JM, Gillece JD, Heaton H, Birdsell D, Hepp C, Fofanov V, Noseda R, Fasanella A, Hoffmaster A, Wagner DM, Keim P.

MBio. 2016 Sep 27;7(5). pii: e01501-16. doi: 10.1128/mBio.01501-16.

14.

The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers.

Sahl JW, Vazquez AJ, Hall CM, Busch JD, Tuanyok A, Mayo M, Schupp JM, Lummis M, Pearson T, Shippy K, Colman RE, Allender CJ, Theobald V, Sarovich DS, Price EP, Hutcheson A, Korlach J, LiPuma JJ, Ladner J, Lovett S, Koroleva G, Palacios G, Limmathurotsakul D, Wuthiekanun V, Wongsuwan G, Currie BJ, Keim P, Wagner DM.

MBio. 2016 Sep 20;7(5). pii: e00846-16. doi: 10.1128/mBio.00846-16.

15.

Spatial analysis and identification of high risk plague regions in Pakistan based on associated rodent species distribution.

Shabbir M, Aleem M, Javed S, Wagner DM, Keim PS, Eqani SA, Bokhari H.

J Infect Dev Ctries. 2016 Aug 2;10(7):687-93. doi: 10.3855/jidc.7091. Review.

16.

Improved multilocus sequence typing of Burkholderia pseudomallei and closely related species.

Price EP, MacHunter B, Spratt BG, Wagner DM, Currie BJ, Sarovich DS.

J Med Microbiol. 2016 Sep;65(9):992-7. doi: 10.1099/jmm.0.000312. Epub 2016 Jul 13.

PMID:
27412128
17.

The Relationship between Socio-demographic and Lifestyle Factors and Academic Performance.

Wada A, Wagner DM, Al Qassab F, Mohamed M, Hamad M, Al Sharbatti S.

Iran J Public Health. 2016 May;45(5):699-701. No abstract available.

18.

Clonality of erythromycin resistance in Francisella tularensis.

Karlsson E, Golovliov I, Lärkeryd A, Granberg M, Larsson E, Öhrman C, Niemcewicz M, Birdsell D, Wagner DM, Forsman M, Johansson A.

J Antimicrob Chemother. 2016 Oct;71(10):2815-23. doi: 10.1093/jac/dkw235. Epub 2016 Jun 21.

PMID:
27334667
19.

Correction for Johnson et al., Complete Genome Sequences for 59 Burkholderia Isolates, Both Pathogenic and Near Neighbor.

Johnson SL, Bishop-Lilly KA, Ladner JT, Daligault HE, Davenport KW, Jaissle J, Frey KG, Koroleva GI, Bruce DC, Coyne SR, Broomall SM, Ketheesan N, Mayo M, Hoffmaster A, Elrod MG, Wuthiekanun V, Tuanyok A, Norton R, Currie BJ, Wagner DM, Keim P, Li PE, Teshima H, Gibbons HS, Palacios GF, Rosenzweig CN, Redden CL, Xu Y, Minogue TD, Chain PS.

Genome Announc. 2016 Apr 21;4(2). pii: e00313-16. doi: 10.1128/genomeA.00313-16. No abstract available.

20.

Genetic variation at the MHC DRB1 locus is similar across Gunnison's prairie dog (Cynomys gunnisoni) colonies regardless of plague history.

Cobble KR, Califf KJ, Stone NE, Shuey MM, Birdsell DN, Colman RE, Schupp JM, Aziz M, Van Andel R, Rocke TE, Wagner DM, Busch JD.

Ecol Evol. 2016 Mar 16;6(8):2624-51. doi: 10.1002/ece3.2077. eCollection 2016 Apr.

21.

Whole Genome Analysis of Injectional Anthrax Identifies Two Disease Clusters Spanning More Than 13 Years.

Keim P, Grunow R, Vipond R, Grass G, Hoffmaster A, Birdsell DN, Klee SR, Pullan S, Antwerpen M, Bayer BN, Latham J, Wiggins K, Hepp C, Pearson T, Brooks T, Sahl J, Wagner DM.

EBioMedicine. 2015 Oct 6;2(11):1613-8. doi: 10.1016/j.ebiom.2015.10.004. eCollection 2015 Nov.

22.

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus.

Bos KI, Herbig A, Sahl J, Waglechner N, Fourment M, Forrest SA, Klunk J, Schuenemann VJ, Poinar D, Kuch M, Golding GB, Dutour O, Keim P, Wagner DM, Holmes EC, Krause J, Poinar HN.

Elife. 2016 Jan 21;5:e12994. doi: 10.7554/eLife.12994.

23.

Unprecedented Melioidosis Cases in Northern Australia Caused by an Asian Burkholderia pseudomallei Strain Identified by Using Large-Scale Comparative Genomics.

Price EP, Sarovich DS, Smith EJ, MacHunter B, Harrington G, Theobald V, Hall CM, Hornstra HM, McRobb E, Podin Y, Mayo M, Sahl JW, Wagner DM, Keim P, Kaestli M, Currie BJ.

Appl Environ Microbiol. 2015 Nov 25;82(3):954-63. doi: 10.1128/AEM.03013-15. Print 2016 Feb 1.

24.

Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei.

Hall CM, Busch JD, Shippy K, Allender CJ, Kaestli M, Mayo M, Sahl JW, Schupp JM, Colman RE, Keim P, Currie BJ, Wagner DM.

PLoS One. 2015 Nov 23;10(11):e0143254. doi: 10.1371/journal.pone.0143254. eCollection 2015.

25.

Investigation of Yersinia pestis Laboratory Adaptation through a Combined Genomics and Proteomics Approach.

Leiser OP, Merkley ED, Clowers BH, Deatherage Kaiser BL, Lin A, Hutchison JR, Melville AM, Wagner DM, Keim PS, Foster JT, Kreuzer HW.

PLoS One. 2015 Nov 24;10(11):e0142997. doi: 10.1371/journal.pone.0142997. eCollection 2015.

26.

Water as Source of Francisella tularensis Infection in Humans, Turkey.

Kilic S, Birdsell DN, Karagöz A, Çelebi B, Bakkaloglu Z, Arikan M, Sahl JW, Mitchell C, Rivera A, Maltinsky S, Keim P, Üstek D, Durmaz R, Wagner DM.

Emerg Infect Dis. 2015 Dec;21(12):2213-6. doi: 10.3201/eid2112.150634.

27.

Viability of Yersinia pestis subcultures in agar stabs.

Leal NC, Sobreira M, Araújo AF, Magalhães JL, Vogler AJ, Bollig MC, Nottingham R, Keim P, Wagner DM, Almeida AM.

Lett Appl Microbiol. 2016 Jan;62(1):91-5. doi: 10.1111/lam.12519.

PMID:
26524218
28.

A review of methods for subtyping Yersinia pestis: From phenotypes to whole genome sequencing.

Vogler AJ, Keim P, Wagner DM.

Infect Genet Evol. 2016 Jan;37:21-36. doi: 10.1016/j.meegid.2015.10.024. Epub 2015 Oct 27. Review.

29.

Pangenome Analysis of Burkholderia pseudomallei: Genome Evolution Preserves Gene Order despite High Recombination Rates.

Spring-Pearson SM, Stone JK, Doyle A, Allender CJ, Okinaka RT, Mayo M, Broomall SM, Hill JM, Karavis MA, Hubbard KS, Insalaco JM, McNew LA, Rosenzweig CN, Gibbons HS, Currie BJ, Wagner DM, Keim P, Tuanyok A.

PLoS One. 2015 Oct 20;10(10):e0140274. doi: 10.1371/journal.pone.0140274. eCollection 2015.

30.

Redefining the differences in gene content between Yersinia pestis and Yersinia pseudotuberculosis using large-scale comparative genomics.

Califf KJ, Keim PS, Wagner DM, Sahl JW.

Microb Genom. 2015 Aug 3;1(2):e000028. doi: 10.1099/mgen.0.000028. eCollection 2015 Aug.

31.

Identification of Burkholderia pseudomallei Near-Neighbor Species in the Northern Territory of Australia.

Ginther JL, Mayo M, Warrington SD, Kaestli M, Mullins T, Wagner DM, Currie BJ, Tuanyok A, Keim P.

PLoS Negl Trop Dis. 2015 Jun 29;9(6):e0003892. doi: 10.1371/journal.pntd.0003892. eCollection 2015.

32.

Diverse Genotypes of Yersinia pestis Caused Plague in Madagascar in 2007.

Riehm JM, Projahn M, Vogler AJ, Rajerison M, Andersen G, Hall CM, Zimmermann T, Soanandrasana R, Andrianaivoarimanana V, Straubinger RK, Nottingham R, Keim P, Wagner DM, Scholz HC.

PLoS Negl Trop Dis. 2015 Jun 12;9(6):e0003844. doi: 10.1371/journal.pntd.0003844. eCollection 2015 Jun.

33.

Burkholderia stagnalis sp. nov. and Burkholderia territorii sp. nov., two novel Burkholderia cepacia complex species from environmental and human sources.

De Smet B, Mayo M, Peeters C, Zlosnik JE, Spilker T, Hird TJ, LiPuma JJ, Kidd TJ, Kaestli M, Ginther JL, Wagner DM, Keim P, Bell SC, Jacobs JA, Currie BJ, Vandamme P.

Int J Syst Evol Microbiol. 2015 Jul;65(7):2265-71. doi: 10.1099/ijs.0.000251. Epub 2015 Apr 14.

PMID:
25872960
34.

Diverse Francisella tularensis strains and oropharyngeal tularemia, Turkey.

Özsürekci Y, Birdsell DN, Çelik M, Karadağ-Öncel E, Johansson A, Forsman M, Vogler AJ, Keim P, Ceyhan M, Wagner DM.

Emerg Infect Dis. 2015 Jan;21(1):173-5. doi: 10.3201/eid2101.141087. No abstract available.

35.

Thirty years of tick population genetics: a comprehensive review.

Araya-Anchetta A, Busch JD, Scoles GA, Wagner DM.

Infect Genet Evol. 2015 Jan;29:164-79. doi: 10.1016/j.meegid.2014.11.008. Epub 2014 Nov 18. Review.

36.

Insights to genetic characterization tools for epidemiological tracking of Francisella tularensis in Sweden.

Wahab T, Birdsell DN, Hjertqvist M, Mitchell CL, Wagner DM, Keim PS, Hedenström I, Löfdahl S.

PLoS One. 2014 Nov 17;9(11):e112167. doi: 10.1371/journal.pone.0112167. eCollection 2014.

37.

Multiple mutations in the para-sodium channel gene are associated with pyrethroid resistance in Rhipicephalus microplus from the United States and Mexico.

Stone NE, Olafson PU, Davey RB, Buckmeier G, Bodine D, Sidak-Loftis LC, Giles JR, Duhaime R, Miller RJ, Mosqueda J, Scoles GA, Wagner DM, Busch JD.

Parasit Vectors. 2014 Oct 1;7:456. doi: 10.1186/s13071-014-0456-z.

38.

Genotyping of Burkholderia mallei from an outbreak of glanders in Bahrain suggests multiple introduction events.

Scholz HC, Pearson T, Hornstra H, Projahn M, Terzioglu R, Wernery R, Georgi E, Riehm JM, Wagner DM, Keim PS, Joseph M, Johnson B, Kinne J, Jose S, Hepp CM, Witte A, Wernery U.

PLoS Negl Trop Dis. 2014 Sep 25;8(9):e3195. doi: 10.1371/journal.pntd.0003195. eCollection 2014 Sep.

39.

Yersinia pestis and the three plague pandemics--authors' reply.

Wagner DM, Keim PS, Scholz HC, Holmes EC, Poinar H.

Lancet Infect Dis. 2014 Oct;14(10):919. doi: 10.1016/S1473-3099(14)70923-5. No abstract available.

PMID:
25253401
40.

TaqMan real-time PCR assays for single-nucleotide polymorphisms which identify Francisella tularensis and its subspecies and subpopulations.

Birdsell DN, Vogler AJ, Buchhagen J, Clare A, Kaufman E, Naumann A, Driebe E, Wagner DM, Keim PS.

PLoS One. 2014 Sep 19;9(9):e107964. doi: 10.1371/journal.pone.0107964. eCollection 2014.

41.

An outbreak of respiratory tularemia caused by diverse clones of Francisella tularensis.

Johansson A, Lärkeryd A, Widerström M, Mörtberg S, Myrtännäs K, Ohrman C, Birdsell D, Keim P, Wagner DM, Forsman M, Larsson P.

Clin Infect Dis. 2014 Dec 1;59(11):1546-53. doi: 10.1093/cid/ciu621. Epub 2014 Aug 5.

42.

Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes.

Khmaladze E, Birdsell DN, Naumann AA, Hochhalter CB, Seymour ML, Nottingham R, Beckstrom-Sternberg SM, Beckstrom-Sternberg J, Nikolich MP, Chanturia G, Zhgenti E, Zakalashvili M, Malania L, Babuadze G, Tsertsvadze N, Abazashvili N, Kekelidze M, Tsanava S, Imnadze P, Ganz HH, Getz WM, Pearson O, Gajer P, Eppinger M, Ravel J, Wagner DM, Okinaka RT, Schupp JM, Keim P, Pearson T.

PLoS One. 2014 Jul 21;9(7):e102651. doi: 10.1371/journal.pone.0102651. eCollection 2014.

43.

Diversity of Francisella tularensis subsp. holarctica lineages, China.

Wang Y, Peng Y, Hai R, Xia L, Li H, Zhang Z, Cai H, Liang Y, Shen X, Yu D, Birdsell D, Wagner DM, Keim P.

Emerg Infect Dis. 2014 Jul;20(7):1191-4. doi: 10.3201/eid2007.130931.

44.

Making the right software choice for clinically used equipment in radiation oncology.

Vorwerk H, Zink K, Wagner DM, Engenhart-Cabillic R.

Radiat Oncol. 2014 Jun 23;9:145. doi: 10.1186/1748-717X-9-145.

45.

Francisella tularensis subsp. tularensis group A.I, United States.

Birdsell DN, Johansson A, Öhrman C, Kaufman E, Molins C, Pearson T, Gyuranecz M, Naumann A, Vogler AJ, Myrtennäs K, Larsson P, Forsman M, Sjödin A, Gillece JD, Schupp J, Petersen JM, Keim P, Wagner DM.

Emerg Infect Dis. 2014 May;20(5):861-5. doi: 10.3201/eid2005.131559.

46.

Invasive potential of cattle fever ticks in the southern United States.

Giles JR, Peterson AT, Busch JD, Olafson PU, Scoles GA, Davey RB, Pound JM, Kammlah DM, Lohmeyer KH, Wagner DM.

Parasit Vectors. 2014 Apr 17;7:189. doi: 10.1186/1756-3305-7-189.

47.

Widespread movement of invasive cattle fever ticks (Rhipicephalus microplus) in southern Texas leads to shared local infestations on cattle and deer.

Busch JD, Stone NE, Nottingham R, Araya-Anchetta A, Lewis J, Hochhalter C, Giles JR, Gruendike J, Freeman J, Buckmeier G, Bodine D, Duhaime R, Miller RJ, Davey RB, Olafson PU, Scoles GA, Wagner DM.

Parasit Vectors. 2014 Apr 17;7:188. doi: 10.1186/1756-3305-7-188.

48.

The innate immune response may be important for surviving plague in wild Gunnison's prairie dogs.

Busch JD, Van Andel R, Stone NE, Cobble KR, Nottingham R, Lee J, VerSteeg M, Corcoran J, Cordova J, Van Pelt W, Shuey MM, Foster JT, Schupp JM, Beckstrom-Sternberg S, Beckstrom-Sternberg J, Keim P, Smith S, Rodriguez-Ramos J, Williamson JL, Rocke TE, Wagner DM.

J Wildl Dis. 2013 Oct;49(4):920-31. doi: 10.7589/2012-08-209.

PMID:
24502719
49.

Yersinia pestis and the plague of Justinian 541-543 AD: a genomic analysis.

Wagner DM, Klunk J, Harbeck M, Devault A, Waglechner N, Sahl JW, Enk J, Birdsell DN, Kuch M, Lumibao C, Poinar D, Pearson T, Fourment M, Golding B, Riehm JM, Earn DJ, Dewitte S, Rouillard JM, Grupe G, Wiechmann I, Bliska JB, Keim PS, Scholz HC, Holmes EC, Poinar H.

Lancet Infect Dis. 2014 Apr;14(4):319-26. doi: 10.1016/S1473-3099(13)70323-2. Epub 2014 Jan 28.

PMID:
24480148
50.

Injectional anthrax in heroin users, Europe, 2000-2012.

Hanczaruk M, Reischl U, Holzmann T, Frangoulidis D, Wagner DM, Keim PS, Antwerpen MH, Meyer H, Grass G.

Emerg Infect Dis. 2014 Feb;20(2):322-3. doi: 10.3201/eid2002.120921. No abstract available.

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