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Items: 39

1.

Scalable Device for Automated Microbial Electroporation in a Digital Microfluidic Platform.

Madison AC, Royal MW, Vigneault F, Chen L, Griffin PB, Horowitz M, Church GM, Fair RB.

ACS Synth Biol. 2017 Sep 15;6(9):1701-1709. doi: 10.1021/acssynbio.7b00007. Epub 2017 Jun 7.

PMID:
28569062
2.

In Vivo Enrichment of Diabetogenic T Cells.

Thelin MA, Kissler S, Vigneault F, Watters AL, White D, Koshy ST, Vermillion SA, Mooney DJ, Serwold T, Ali OA.

Diabetes. 2017 Aug;66(8):2220-2229. doi: 10.2337/db16-0946. Epub 2017 Apr 10.

3.

Automated electrotransformation of Escherichia coli on a digital microfluidic platform using bioactivated magnetic beads.

Moore JA, Nemat-Gorgani M, Madison AC, Sandahl MA, Punnamaraju S, Eckhardt AE, Pollack MG, Vigneault F, Church GM, Fair RB, Horowitz MA, Griffin PB.

Biomicrofluidics. 2017 Feb 3;11(1):014110. doi: 10.1063/1.4975391. eCollection 2017 Jan.

4.

Hierarchical Clustering Can Identify B Cell Clones with High Confidence in Ig Repertoire Sequencing Data.

Gupta NT, Adams KD, Briggs AW, Timberlake SC, Vigneault F, Kleinstein SH.

J Immunol. 2017 Mar 15;198(6):2489-2499. doi: 10.4049/jimmunol.1601850. Epub 2017 Feb 8.

5.

Exploration of immunoglobulin transcriptomes from mice immunized with three-finger toxins and phospholipases A2 from the Central American coral snake, Micrurus nigrocinctus.

Laustsen AH, Engmark M, Clouser C, Timberlake S, Vigneault F, Gutiérrez JM, Lomonte B.

PeerJ. 2017 Jan 24;5:e2924. doi: 10.7717/peerj.2924. eCollection 2017.

6.

Dysregulation of B Cell Repertoire Formation in Myasthenia Gravis Patients Revealed through Deep Sequencing.

Vander Heiden JA, Stathopoulos P, Zhou JQ, Chen L, Gilbert TJ, Bolen CR, Barohn RJ, Dimachkie MM, Ciafaloni E, Broering TJ, Vigneault F, Nowak RJ, Kleinstein SH, O'Connor KC.

J Immunol. 2017 Feb 15;198(4):1460-1473. doi: 10.4049/jimmunol.1601415. Epub 2017 Jan 13.

7.

A Model of Somatic Hypermutation Targeting in Mice Based on High-Throughput Ig Sequencing Data.

Cui A, Di Niro R, Vander Heiden JA, Briggs AW, Adams K, Gilbert T, O'Connor KC, Vigneault F, Shlomchik MJ, Kleinstein SH.

J Immunol. 2016 Nov 1;197(9):3566-3574. Epub 2016 Oct 5.

8.

The RNA Structure of cis-acting Translational Elements of the Chloroplast psbC mRNA in Chlamydomonas reinhardtii.

Rahim MM, Vigneault F, Zerges W.

Front Plant Sci. 2016 Jun 14;7:828. doi: 10.3389/fpls.2016.00828. eCollection 2016.

9.

Neutralizing antibodies against West Nile virus identified directly from human B cells by single-cell analysis and next generation sequencing.

Tsioris K, Gupta NT, Ogunniyi AO, Zimnisky RM, Qian F, Yao Y, Wang X, Stern JN, Chari R, Briggs AW, Clouser CR, Vigneault F, Church GM, Garcia MN, Murray KO, Montgomery RR, Kleinstein SH, Love JC.

Integr Biol (Camb). 2015 Dec;7(12):1587-97. doi: 10.1039/c5ib00169b. Epub 2015 Oct 20.

10.

In Cellulo DNA Analysis: LMPCR Footprinting.

Drouin R, Bastien N, Millau JF, Vigneault F, Paradis I.

Methods Mol Biol. 2015;1334:41-84. doi: 10.1007/978-1-4939-2877-4_4.

PMID:
26404143
11.

Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers.

Spencer SJ, Tamminen MV, Preheim SP, Guo MT, Briggs AW, Brito IL, A Weitz D, Pitkänen LK, Vigneault F, Juhani Virta MP, Alm EJ.

ISME J. 2016 Feb;10(2):427-36. doi: 10.1038/ismej.2015.124. Epub 2015 Sep 22.

12.

Salmonella Infection Drives Promiscuous B Cell Activation Followed by Extrafollicular Affinity Maturation.

Di Niro R, Lee SJ, Vander Heiden JA, Elsner RA, Trivedi N, Bannock JM, Gupta NT, Kleinstein SH, Vigneault F, Gilbert TJ, Meffre E, McSorley SJ, Shlomchik MJ.

Immunity. 2015 Jul 21;43(1):120-31. doi: 10.1016/j.immuni.2015.06.013. Epub 2015 Jul 14.

13.

B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes.

Stern JN, Yaari G, Vander Heiden JA, Church G, Donahue WF, Hintzen RQ, Huttner AJ, Laman JD, Nagra RM, Nylander A, Pitt D, Ramanan S, Siddiqui BA, Vigneault F, Kleinstein SH, Hafler DA, O'Connor KC.

Sci Transl Med. 2014 Aug 6;6(248):248ra107. doi: 10.1126/scitranslmed.3008879.

14.

High-resolution antibody dynamics of vaccine-induced immune responses.

Laserson U, Vigneault F, Gadala-Maria D, Yaari G, Uduman M, Vander Heiden JA, Kelton W, Taek Jung S, Liu Y, Laserson J, Chari R, Lee JH, Bachelet I, Hickey B, Lieberman-Aiden E, Hanczaruk B, Simen BB, Egholm M, Koller D, Georgiou G, Kleinstein SH, Church GM.

Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):4928-33. doi: 10.1073/pnas.1323862111. Epub 2014 Mar 17.

15.

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.

Vander Heiden JA, Yaari G, Uduman M, Stern JN, O'Connor KC, Hafler DA, Vigneault F, Kleinstein SH.

Bioinformatics. 2014 Jul 1;30(13):1930-2. doi: 10.1093/bioinformatics/btu138. Epub 2014 Mar 10.

16.

Integrating B cell lineage information into statistical tests for detecting selection in Ig sequences.

Uduman M, Shlomchik MJ, Vigneault F, Church GM, Kleinstein SH.

J Immunol. 2014 Feb 1;192(3):867-74. doi: 10.4049/jimmunol.1301551. Epub 2013 Dec 27.

17.

Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data.

Yaari G, Vander Heiden JA, Uduman M, Gadala-Maria D, Gupta N, Stern JN, O'Connor KC, Hafler DA, Laserson U, Vigneault F, Kleinstein SH.

Front Immunol. 2013 Nov 15;4:358. doi: 10.3389/fimmu.2013.00358. eCollection 2013.

18.

The effects of somatic hypermutation on neutralization and binding in the PGT121 family of broadly neutralizing HIV antibodies.

Sok D, Laserson U, Laserson J, Liu Y, Vigneault F, Julien JP, Briney B, Ramos A, Saye KF, Le K, Mahan A, Wang S, Kardar M, Yaari G, Walker LM, Simen BB, St John EP, Chan-Hui PY, Swiderek K, Kleinstein SH, Alter G, Seaman MS, Chakraborty AK, Koller D, Wilson IA, Church GM, Burton DR, Poignard P.

PLoS Pathog. 2013;9(11):e1003754. doi: 10.1371/journal.ppat.1003754. Epub 2013 Nov 21. Erratum in: PLoS Pathog. 2013 Dec;9(12). doi:10.1371/annotation/f1f8c791-61e9-45c6-a455-92c6dadf9f06. Kleinstein, Stephen H [corrected to Kleinstein, Steven H].

19.

Quantification of microRNA expression with next-generation sequencing.

Eminaga S, Christodoulou DC, Vigneault F, Church GM, Seidman JG.

Curr Protoc Mol Biol. 2013 Jul;Chapter 4:Unit 4.17. doi: 10.1002/0471142727.mb0417s103.

20.

Altered expression of the poly(ADP-ribosyl)ation enzymes in uveal melanoma and regulation of PARG gene expression by the transcription factor ERM.

Molloy-Simard V, St-Laurent JF, Vigneault F, Gaudreault M, Dargis N, Guérin MC, Leclerc S, Morcos M, Black D, Molgat Y, Bergeron D, de Launoit Y, Boudreau F, Desnoyers S, Guérin S.

Invest Ophthalmol Vis Sci. 2012 Sep 14;53(10):6219-31. doi: 10.1167/iovs.11-8853.

PMID:
22915039
21.

Systematic identification of edited microRNAs in the human brain.

Alon S, Mor E, Vigneault F, Church GM, Locatelli F, Galeano F, Gallo A, Shomron N, Eisenberg E.

Genome Res. 2012 Aug;22(8):1533-40. doi: 10.1101/gr.131573.111. Epub 2012 Apr 12.

22.

High-throughput multiplex sequencing of miRNA.

Vigneault F, Ter-Ovanesyan D, Alon S, Eminaga S, C Christodoulou D, Seidman JG, Eisenberg E, M Church G.

Curr Protoc Hum Genet. 2012 Apr;Chapter 11:Unit 11.12.1-10. doi: 10.1002/0471142905.hg1112s73.

23.

Rescue of the transcription factors Sp1 and NFI in human skin keratinocytes through a feeder-layer-dependent suppression of the proteasome activity.

Duval C, Gaudreault M, Vigneault F, Touzel-Deschênes L, Rochette PJ, Masson-Gadais B, Germain L, Guérin SL.

J Mol Biol. 2012 May 18;418(5):281-99. doi: 10.1016/j.jmb.2012.01.021. Epub 2012 Mar 12.

PMID:
22420942
24.

Barcoding bias in high-throughput multiplex sequencing of miRNA.

Alon S, Vigneault F, Eminaga S, Christodoulou DC, Seidman JG, Church GM, Eisenberg E.

Genome Res. 2011 Sep;21(9):1506-11. doi: 10.1101/gr.121715.111. Epub 2011 Jul 12.

25.

Identification of differentially expressed genes in uveal melanoma using suppressive subtractive hybridization.

Landreville S, Lupien CB, Vigneault F, Gaudreault M, Mathieu M, Rousseau AP, Guérin SL, Salesse C.

Mol Vis. 2011;17:1324-33. Epub 2011 May 13.

26.

Suppression of α5 gene expression is closely related to the tumorigenic properties of uveal melanoma cell lines.

Landreville S, Vigneault F, Bergeron MA, Leclerc S, Gaudreault M, Morcos M, Mouriaux F, Salesse C, Guérin SL.

Pigment Cell Melanoma Res. 2011 Aug;24(4):643-55. doi: 10.1111/j.1755-148X.2011.00869.x. Epub 2011 Jun 15.

PMID:
21592318
27.

Transcriptional profiling of CD4 T cells identifies distinct subgroups of HIV-1 elite controllers.

Vigneault F, Woods M, Buzon MJ, Li C, Pereyra F, Crosby SD, Rychert J, Church G, Martinez-Picado J, Rosenberg ES, Telenti A, Yu XG, Lichterfeld M.

J Virol. 2011 Mar;85(6):3015-9. doi: 10.1128/JVI.01846-10. Epub 2010 Dec 22.

28.

Reprogramming of T cells from human peripheral blood.

Loh YH, Hartung O, Li H, Guo C, Sahalie JM, Manos PD, Urbach A, Heffner GC, Grskovic M, Vigneault F, Lensch MW, Park IH, Agarwal S, Church GM, Collins JJ, Irion S, Daley GQ.

Cell Stem Cell. 2010 Jul 2;7(1):15-9. doi: 10.1016/j.stem.2010.06.004. No abstract available.

29.

In cellulo DNA analysis (LMPCR footprinting).

Drouin R, Bastien N, Millau JF, Vigneault F, Paradis I.

Methods Mol Biol. 2009;543:293-336. doi: 10.1007/978-1-60327-015-1_20.

PMID:
19378174
30.

Efficient microRNA capture and bar-coding via enzymatic oligonucleotide adenylation.

Vigneault F, Sismour AM, Church GM.

Nat Methods. 2008 Sep;5(9):777-9. doi: 10.1038/nmeth.1244.

PMID:
19160512
31.

Transcriptional regulation of the human alpha6 integrin gene by the transcription factor NFI during corneal wound healing.

Gaudreault M, Vigneault F, Gingras ME, Leclerc S, Carrier P, Germain L, Guérin SL.

Invest Ophthalmol Vis Sci. 2008 Sep;49(9):3758-67. doi: 10.1167/iovs.08-1913. Epub 2008 Apr 17.

PMID:
18421093
32.

Members of the plant NIMA-related kinases are involved in organ development and vascularization in poplar, Arabidopsis and rice.

Vigneault F, Lachance D, Cloutier M, Pelletier G, Levasseur C, Séguin A.

Plant J. 2007 Aug;51(4):575-88. Epub 2007 Jun 6. Erratum in: Plant J. 2008 Jun;54(6):1128.

PMID:
17886359
33.

Laminin reduces expression of the human alpha6 integrin subunit gene by altering the level of the transcription factors Sp1 and Sp3.

Gaudreault M, Vigneault F, Leclerc S, Guérin SL.

Invest Ophthalmol Vis Sci. 2007 Aug;48(8):3490-505.

PMID:
17652716
34.

Control of integrin genes expression in the eye.

Vigneault F, Zaniolo K, Gaudreault M, Gingras ME, Guérin SL.

Prog Retin Eye Res. 2007 Mar;26(2):99-161. Epub 2006 Dec 27. Review.

PMID:
17194617
35.

Transcriptional regulation of the cyclin-dependent kinase inhibitor 1A (p21) gene by NFI in proliferating human cells.

Ouellet S, Vigneault F, Lessard M, Leclerc S, Drouin R, Guérin SL.

Nucleic Acids Res. 2006;34(22):6472-87. Epub 2006 Nov 27.

36.

Regulation of gene expression: probing DNA-protein interactions in vivo and in vitro.

Vigneault F, Guérin SL.

Expert Rev Proteomics. 2005 Oct;2(5):705-18. Review.

PMID:
16209650
37.

Characterization of a poplar NIMA-related kinase PNek1 and its potential role in meristematic activity.

Cloutier M, Vigneault F, Lachance D, Séguin A.

FEBS Lett. 2005 Aug 29;579(21):4659-65.

38.
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