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Items: 1 to 50 of 107

1.

Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe.

Fregel R, Méndez FL, Bokbot Y, Martín-Socas D, Camalich-Massieu MD, Santana J, Morales J, Ávila-Arcos MC, Underhill PA, Shapiro B, Wojcik G, Rasmussen M, Soares AER, Kapp J, Sockell A, Rodríguez-Santos FJ, Mikdad A, Trujillo-Mederos A, Bustamante CD.

Proc Natl Acad Sci U S A. 2018 Jun 12. pii: 201800851. doi: 10.1073/pnas.1800851115. [Epub ahead of print]

PMID:
29895688
2.

Human Y Chromosome Haplogroup N: A Non-trivial Time-Resolved Phylogeography that Cuts across Language Families.

Ilumäe AM, Reidla M, Chukhryaeva M, Järve M, Post H, Karmin M, Saag L, Agdzhoyan A, Kushniarevich A, Litvinov S, Ekomasova N, Tambets K, Metspalu E, Khusainova R, Yunusbayev B, Khusnutdinova EK, Osipova LP, Fedorova S, Utevska O, Koshel S, Balanovska E, Behar DM, Balanovsky O, Kivisild T, Underhill PA, Villems R, Rootsi S.

Am J Hum Genet. 2016 Jul 7;99(1):163-73. doi: 10.1016/j.ajhg.2016.05.025.

3.

Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences.

Poznik GD, Xue Y, Mendez FL, Willems TF, Massaia A, Wilson Sayres MA, Ayub Q, McCarthy SA, Narechania A, Kashin S, Chen Y, Banerjee R, Rodriguez-Flores JL, Cerezo M, Shao H, Gymrek M, Malhotra A, Louzada S, Desalle R, Ritchie GR, Cerveira E, Fitzgerald TW, Garrison E, Marcketta A, Mittelman D, Romanovitch M, Zhang C, Zheng-Bradley X, Abecasis GR, McCarroll SA, Flicek P, Underhill PA, Coin L, Zerbino DR, Yang F, Lee C, Clarke L, Auton A, Erlich Y, Handsaker RE; 1000 Genomes Project Consortium, Bustamante CD, Tyler-Smith C.

Nat Genet. 2016 Jun;48(6):593-9. doi: 10.1038/ng.3559. Epub 2016 Apr 25. Review.

4.

Y-chromosome phylogeographic analysis of the Greek-Cypriot population reveals elements consistent with Neolithic and Bronze Age settlements.

Voskarides K, Mazières S, Hadjipanagi D, Di Cristofaro J, Ignatiou A, Stefanou C, King RJ, Underhill PA, Chiaroni J, Deltas C.

Investig Genet. 2016 Feb 11;7:1. doi: 10.1186/s13323-016-0032-8. eCollection 2016.

5.

A recent bottleneck of Y chromosome diversity coincides with a global change in culture.

Karmin M, Saag L, Vicente M, Wilson Sayres MA, Järve M, Talas UG, Rootsi S, Ilumäe AM, Mägi R, Mitt M, Pagani L, Puurand T, Faltyskova Z, Clemente F, Cardona A, Metspalu E, Sahakyan H, Yunusbayev B, Hudjashov G, DeGiorgio M, Loogväli EL, Eichstaedt C, Eelmets M, Chaubey G, Tambets K, Litvinov S, Mormina M, Xue Y, Ayub Q, Zoraqi G, Korneliussen TS, Akhatova F, Lachance J, Tishkoff S, Momynaliev K, Ricaut FX, Kusuma P, Razafindrazaka H, Pierron D, Cox MP, Sultana GN, Willerslev R, Muller C, Westaway M, Lambert D, Skaro V, Kovačevic L, Turdikulova S, Dalimova D, Khusainova R, Trofimova N, Akhmetova V, Khidiyatova I, Lichman DV, Isakova J, Pocheshkhova E, Sabitov Z, Barashkov NA, Nymadawa P, Mihailov E, Seng JW, Evseeva I, Migliano AB, Abdullah S, Andriadze G, Primorac D, Atramentova L, Utevska O, Yepiskoposyan L, Marjanovic D, Kushniarevich A, Behar DM, Gilissen C, Vissers L, Veltman JA, Balanovska E, Derenko M, Malyarchuk B, Metspalu A, Fedorova S, Eriksson A, Manica A, Mendez FL, Karafet TM, Veeramah KR, Bradman N, Hammer MF, Osipova LP, Balanovsky O, Khusnutdinova EK, Johnsen K, Remm M, Thomas MG, Tyler-Smith C, Underhill PA, Willerslev E, Nielsen R, Metspalu M, Villems R, Kivisild T.

Genome Res. 2015 Apr;25(4):459-66. doi: 10.1101/gr.186684.114. Epub 2015 Mar 13.

6.

Genetics and the history of the Samaritans: Y-chromosomal microsatellites and genetic affinity between Samaritans and Cohanim.

Oefner PJ, Hölzi G, Shen P, Shpirer I, Gefel D, Lavi T, Woolf E, Cohen J, Cinnioglu C, Underhill PA, Rosenberg NA, Hochrein J, Granka JM, Hillel J, Feldman MW.

Hum Biol. 2013 Dec;85(6):825-58.

PMID:
25079122
7.

Population genomic analysis of ancient and modern genomes yields new insights into the genetic ancestry of the Tyrolean Iceman and the genetic structure of Europe.

Sikora M, Carpenter ML, Moreno-Estrada A, Henn BM, Underhill PA, Sánchez-Quinto F, Zara I, Pitzalis M, Sidore C, Busonero F, Maschio A, Angius A, Jones C, Mendoza-Revilla J, Nekhrizov G, Dimitrova D, Theodossiev N, Harkins TT, Keller A, Maixner F, Zink A, Abecasis G, Sanna S, Cucca F, Bustamante CD.

PLoS Genet. 2014 May 8;10(5):e1004353. doi: 10.1371/journal.pgen.1004353. eCollection 2014 May.

8.

The phylogenetic and geographic structure of Y-chromosome haplogroup R1a.

Underhill PA, Poznik GD, Rootsi S, Järve M, Lin AA, Wang J, Passarelli B, Kanbar J, Myres NM, King RJ, Di Cristofaro J, Sahakyan H, Behar DM, Kushniarevich A, Sarac J, Saric T, Rudan P, Pathak AK, Chaubey G, Grugni V, Semino O, Yepiskoposyan L, Bahmanimehr A, Farjadian S, Balanovsky O, Khusnutdinova EK, Herrera RJ, Chiaroni J, Bustamante CD, Quake SR, Kivisild T, Villems R.

Eur J Hum Genet. 2015 Jan;23(1):124-31. doi: 10.1038/ejhg.2014.50. Epub 2014 Mar 26.

9.

Phylogenetic applications of whole Y-chromosome sequences and the Near Eastern origin of Ashkenazi Levites.

Rootsi S, Behar DM, Järve M, Lin AA, Myres NM, Passarelli B, Poznik GD, Tzur S, Sahakyan H, Pathak AK, Rosset S, Metspalu M, Grugni V, Semino O, Metspalu E, Bustamante CD, Skorecki K, Villems R, Kivisild T, Underhill PA.

Nat Commun. 2013;4:2928. doi: 10.1038/ncomms3928.

10.

Afghan Hindu Kush: where Eurasian sub-continent gene flows converge.

Di Cristofaro J, Pennarun E, Mazières S, Myres NM, Lin AA, Temori SA, Metspalu M, Metspalu E, Witzel M, King RJ, Underhill PA, Villems R, Chiaroni J.

PLoS One. 2013 Oct 18;8(10):e76748. doi: 10.1371/journal.pone.0076748. eCollection 2013.

11.

Sequencing Y chromosomes resolves discrepancy in time to common ancestor of males versus females.

Poznik GD, Henn BM, Yee MC, Sliwerska E, Euskirchen GM, Lin AA, Snyder M, Quintana-Murci L, Kidd JM, Underhill PA, Bustamante CD.

Science. 2013 Aug 2;341(6145):562-5. doi: 10.1126/science.1237619.

12.

The phylogeography of Y-chromosome haplogroup h1a1a-m82 reveals the likely Indian origin of the European Romani populations.

Rai N, Chaubey G, Tamang R, Pathak AK, Singh VK, Karmin M, Singh M, Rani DS, Anugula S, Yadav BK, Singh A, Srinivasagan R, Yadav A, Kashyap M, Narvariya S, Reddy AG, van Driem G, Underhill PA, Villems R, Kivisild T, Singh L, Thangaraj K.

PLoS One. 2012;7(11):e48477. doi: 10.1371/journal.pone.0048477. Epub 2012 Nov 28.

13.

Distinguishing the co-ancestries of haplogroup G Y-chromosomes in the populations of Europe and the Caucasus.

Rootsi S, Myres NM, Lin AA, Järve M, King RJ, Kutuev I, Cabrera VM, Khusnutdinova EK, Varendi K, Sahakyan H, Behar DM, Khusainova R, Balanovsky O, Balanovska E, Rudan P, Yepiskoposyan L, Bahmanimehr A, Farjadian S, Kushniarevich A, Herrera RJ, Grugni V, Battaglia V, Nici C, Crobu F, Karachanak S, Hooshiar Kashani B, Houshmand M, Sanati MH, Toncheva D, Lisa A, Semino O, Chiaroni J, Di Cristofaro J, Villems R, Kivisild T, Underhill PA.

Eur J Hum Genet. 2012 Dec;20(12):1275-82. doi: 10.1038/ejhg.2012.86. Epub 2012 May 16.

14.

Y-chromosome diversity in Native Mexicans reveals continental transition of genetic structure in the Americas.

Sandoval K, Moreno-Estrada A, Mendizabal I, Underhill PA, Lopez-Valenzuela M, Peñaloza-Espinosa R, Lopez-Lopez M, Buentello-Malo L, Avelino H, Calafell F, Comas D.

Am J Phys Anthropol. 2012 Jul;148(3):395-405. doi: 10.1002/ajpa.22062. Epub 2012 May 11.

PMID:
22576278
15.

Afghanistan from a Y-chromosome perspective.

Lacau H, Gayden T, Regueiro M, Chennakrishnaiah S, Bukhari A, Underhill PA, Garcia-Bertrand RL, Herrera RJ.

Eur J Hum Genet. 2012 Oct;20(10):1063-70. doi: 10.1038/ejhg.2012.59. Epub 2012 Apr 18.

16.

New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing.

Keller A, Graefen A, Ball M, Matzas M, Boisguerin V, Maixner F, Leidinger P, Backes C, Khairat R, Forster M, Stade B, Franke A, Mayer J, Spangler J, McLaughlin S, Shah M, Lee C, Harkins TT, Sartori A, Moreno-Estrada A, Henn B, Sikora M, Semino O, Chiaroni J, Rootsi S, Myres NM, Cabrera VM, Underhill PA, Bustamante CD, Vigl EE, Samadelli M, Cipollini G, Haas J, Katus H, O'Connor BD, Carlson MR, Meder B, Blin N, Meese E, Pusch CM, Zink A.

Nat Commun. 2012 Feb 28;3:698. doi: 10.1038/ncomms1701.

PMID:
22426219
17.

Neolithic patrilineal signals indicate that the Armenian plateau was repopulated by agriculturalists.

Herrera KJ, Lowery RK, Hadden L, Calderon S, Chiou C, Yepiskoposyan L, Regueiro M, Underhill PA, Herrera RJ.

Eur J Hum Genet. 2012 Mar;20(3):313-20. doi: 10.1038/ejhg.2011.192. Epub 2011 Nov 16.

18.

Increased Y-chromosome resolution of haplogroup O suggests genetic ties between the Ami aborigines of Taiwan and the Polynesian Islands of Samoa and Tonga.

Mirabal S, Herrera KJ, Gayden T, Regueiro M, Underhill PA, Garcia-Bertrand RL, Herrera RJ.

Gene. 2012 Jan 25;492(2):339-48. doi: 10.1016/j.gene.2011.10.042. Epub 2011 Nov 3.

PMID:
22079672
19.

The Caucasus as an asymmetric semipermeable barrier to ancient human migrations.

Yunusbayev B, Metspalu M, Järve M, Kutuev I, Rootsi S, Metspalu E, Behar DM, Varendi K, Sahakyan H, Khusainova R, Yepiskoposyan L, Khusnutdinova EK, Underhill PA, Kivisild T, Villems R.

Mol Biol Evol. 2012 Jan;29(1):359-65. doi: 10.1093/molbev/msr221. Epub 2011 Sep 13. Erratum in: Mol Biol Evol. 2012 Jul;29(7):1891.

PMID:
21917723
20.

Croatian genetic heritage: Y-chromosome story.

Primorac D, Marjanović D, Rudan P, Villems R, Underhill PA.

Croat Med J. 2011 Jun;52(3):225-34.

21.

The coming of the Greeks to Provence and Corsica: Y-chromosome models of archaic Greek colonization of the western Mediterranean.

King RJ, Di Cristofaro J, Kouvatsi A, Triantaphyllidis C, Scheidel W, Myres NM, Lin AA, Eissautier A, Mitchell M, Binder D, Semino O, Novelletto A, Underhill PA, Chiaroni J.

BMC Evol Biol. 2011 Mar 14;11:69. doi: 10.1186/1471-2148-11-69.

22.

Hunter-gatherer genomic diversity suggests a southern African origin for modern humans.

Henn BM, Gignoux CR, Jobin M, Granka JM, Macpherson JM, Kidd JM, Rodríguez-Botigué L, Ramachandran S, Hon L, Brisbin A, Lin AA, Underhill PA, Comas D, Kidd KK, Norman PJ, Parham P, Bustamante CD, Mountain JL, Feldman MW.

Proc Natl Acad Sci U S A. 2011 Mar 29;108(13):5154-62. doi: 10.1073/pnas.1017511108. Epub 2011 Mar 7.

23.

A major Y-chromosome haplogroup R1b Holocene era founder effect in Central and Western Europe.

Myres NM, Rootsi S, Lin AA, Järve M, King RJ, Kutuev I, Cabrera VM, Khusnutdinova EK, Pshenichnov A, Yunusbayev B, Balanovsky O, Balanovska E, Rudan P, Baldovic M, Herrera RJ, Chiaroni J, Di Cristofaro J, Villems R, Kivisild T, Underhill PA.

Eur J Hum Genet. 2011 Jan;19(1):95-101. doi: 10.1038/ejhg.2010.146. Epub 2010 Aug 25.

24.

Y chromosome diversity, human expansion, drift, and cultural evolution.

Chiaroni J, Underhill PA, Cavalli-Sforza LL.

Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20174-9. doi: 10.1073/pnas.0910803106. Epub 2009 Nov 17. Erratum in: Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13556.

25.

Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a.

Underhill PA, Myres NM, Rootsi S, Metspalu M, Zhivotovsky LA, King RJ, Lin AA, Chow CE, Semino O, Battaglia V, Kutuev I, Järve M, Chaubey G, Ayub Q, Mohyuddin A, Mehdi SQ, Sengupta S, Rogaev EI, Khusnutdinova EK, Pshenichnov A, Balanovsky O, Balanovska E, Jeran N, Augustin DH, Baldovic M, Herrera RJ, Thangaraj K, Singh V, Singh L, Majumder P, Rudan P, Primorac D, Villems R, Kivisild T.

Eur J Hum Genet. 2010 Apr;18(4):479-84. doi: 10.1038/ejhg.2009.194. Epub 2009 Nov 4. Erratum in: Eur J Hum Genet. 2010 Sep;18(9):1074.

26.

The emergence of Y-chromosome haplogroup J1e among Arabic-speaking populations.

Chiaroni J, King RJ, Myres NM, Henn BM, Ducourneau A, Mitchell MJ, Boetsch G, Sheikha I, Lin AA, Nik-Ahd M, Ahmad J, Lattanzi F, Herrera RJ, Ibrahim ME, Brody A, Semino O, Kivisild T, Underhill PA.

Eur J Hum Genet. 2010 Mar;18(3):348-53. doi: 10.1038/ejhg.2009.166. Epub 2009 Oct 14.

27.

Footprints of X-to-Y gene conversion in recent human evolution.

Trombetta B, Cruciani F, Underhill PA, Sellitto D, Scozzari R.

Mol Biol Evol. 2010 Mar;27(3):714-25. doi: 10.1093/molbev/msp231. Epub 2009 Oct 6.

PMID:
19812029
28.

Saudi Arabian Y-Chromosome diversity and its relationship with nearby regions.

Abu-Amero KK, Hellani A, González AM, Larruga JM, Cabrera VM, Underhill PA.

BMC Genet. 2009 Sep 22;10:59. doi: 10.1186/1471-2156-10-59.

29.
30.

Y-chromosome distribution within the geo-linguistic landscape of northwestern Russia.

Mirabal S, Regueiro M, Cadenas AM, Cavalli-Sforza LL, Underhill PA, Verbenko DA, Limborska SA, Herrera RJ.

Eur J Hum Genet. 2009 Oct;17(10):1260-73. doi: 10.1038/ejhg.2009.6. Epub 2009 Mar 4.

31.

Y-chromosomal evidence of the cultural diffusion of agriculture in Southeast Europe.

Battaglia V, Fornarino S, Al-Zahery N, Olivieri A, Pala M, Myres NM, King RJ, Rootsi S, Marjanovic D, Primorac D, Hadziselimovic R, Vidovic S, Drobnic K, Durmishi N, Torroni A, Santachiara-Benerecetti AS, Underhill PA, Semino O.

Eur J Hum Genet. 2009 Jun;17(6):820-30. doi: 10.1038/ejhg.2008.249. Epub 2008 Dec 24. Erratum in: Eur J Hum Genet. 2009 Jun;17(6):853.

32.

Differential Greek and northern African migrations to Sicily are supported by genetic evidence from the Y chromosome.

Di Gaetano C, Cerutti N, Crobu F, Robino C, Inturri S, Gino S, Guarrera S, Underhill PA, King RJ, Romano V, Cali F, Gasparini M, Matullo G, Salerno A, Torre C, Piazza A.

Eur J Hum Genet. 2009 Jan;17(1):91-9. doi: 10.1038/ejhg.2008.120. Epub 2008 Aug 6.

33.

Y-chromosomal evidence of a pastoralist migration through Tanzania to southern Africa.

Henn BM, Gignoux C, Lin AA, Oefner PJ, Shen P, Scozzari R, Cruciani F, Tishkoff SA, Mountain JL, Underhill PA.

Proc Natl Acad Sci U S A. 2008 Aug 5;105(31):10693-8. doi: 10.1073/pnas.0801184105. Epub 2008 Aug 4.

34.

Y-chromosome variation among Sudanese: restricted gene flow, concordance with language, geography, and history.

Hassan HY, Underhill PA, Cavalli-Sforza LL, Ibrahim ME.

Am J Phys Anthropol. 2008 Nov;137(3):316-23. doi: 10.1002/ajpa.20876.

PMID:
18618658
35.

DNA mutation detection using denaturing high-performance liquid chromatography (DHPLC).

Yu B, Sawyer NA, Chiu C, Oefner PJ, Underhill PA.

Curr Protoc Hum Genet. 2006 Feb;Chapter 7:Unit7.10. doi: 10.1002/0471142905.hg0710s48. Review.

PMID:
18428395
36.

New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree.

Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, Hammer MF.

Genome Res. 2008 May;18(5):830-8. doi: 10.1101/gr.7172008. Epub 2008 Apr 2.

37.

Differential Y-chromosome Anatolian influences on the Greek and Cretan Neolithic.

King RJ, Ozcan SS, Carter T, Kalfoğlu E, Atasoy S, Triantaphyllidis C, Kouvatsi A, Lin AA, Chow CE, Zhivotovsky LA, Michalodimitrakis M, Underhill PA.

Ann Hum Genet. 2008 Mar;72(Pt 2):205-14. doi: 10.1111/j.1469-1809.2007.00414.x.

38.

Use of y chromosome and mitochondrial DNA population structure in tracing human migrations.

Underhill PA, Kivisild T.

Annu Rev Genet. 2007;41:539-64. Review.

PMID:
18076332
39.

Y-chromosome diversity characterizes the Gulf of Oman.

Cadenas AM, Zhivotovsky LA, Cavalli-Sforza LL, Underhill PA, Herrera RJ.

Eur J Hum Genet. 2008 Mar;16(3):374-86. Epub 2007 Oct 10.

40.

Co-introgression of Y-chromosome haplogroups and the sickle cell gene across Africa's Sahel.

Bereir RE, Hassan HY, Salih NA, Underhill PA, Cavalli-Sforza LL, Hussain AA, Kwiatkowski D, Ibrahim ME.

Eur J Hum Genet. 2007 Nov;15(11):1183-5. Epub 2007 Aug 15.

41.

Y-chromosome short tandem repeat DYS458.2 non-consensus alleles occur independently in both binary haplogroups J1-M267 and R1b3-M405.

Myres NM, Ekins JE, Lin AA, Cavalli-Sforza LL, Woodward SR, Underhill PA.

Croat Med J. 2007 Aug;48(4):450-9.

42.

Revealing the prehistoric settlement of Australia by Y chromosome and mtDNA analysis.

Hudjashov G, Kivisild T, Underhill PA, Endicott P, Sanchez JJ, Lin AA, Shen P, Oefner P, Renfrew C, Villems R, Forster P.

Proc Natl Acad Sci U S A. 2007 May 22;104(21):8726-30. Epub 2007 May 11.

43.

The Himalayas as a directional barrier to gene flow.

Gayden T, Cadenas AM, Regueiro M, Singh NB, Zhivotovsky LA, Underhill PA, Cavalli-Sforza LL, Herrera RJ.

Am J Hum Genet. 2007 May;80(5):884-94. Epub 2007 Apr 4.

44.

Paleolithic Y-haplogroup heritage predominates in a Cretan highland plateau.

Martinez L, Underhill PA, Zhivotovsky LA, Gayden T, Moschonas NK, Chow CE, Conti S, Mamolini E, Cavalli-Sforza LL, Herrera RJ.

Eur J Hum Genet. 2007 Apr;15(4):485-93. Epub 2007 Jan 31.

45.

A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe.

Rootsi S, Zhivotovsky LA, Baldovic M, Kayser M, Kutuev IA, Khusainova R, Bermisheva MA, Gubina M, Fedorova SA, Ilumäe AM, Khusnutdinova EK, Voevoda MI, Osipova LP, Stoneking M, Lin AA, Ferak V, Parik J, Kivisild T, Underhill PA, Villems R.

Eur J Hum Genet. 2007 Feb;15(2):204-11. Epub 2006 Dec 6.

46.

Y-chromosomal evidence for a limited Greek contribution to the Pathan population of Pakistan.

Firasat S, Khaliq S, Mohyuddin A, Papaioannou M, Tyler-Smith C, Underhill PA, Ayub Q.

Eur J Hum Genet. 2007 Jan;15(1):121-6. Epub 2006 Oct 18.

47.

Difference between evolutionarily effective and germ line mutation rate due to stochastically varying haplogroup size.

Zhivotovsky LA, Underhill PA, Feldman MW.

Mol Biol Evol. 2006 Dec;23(12):2268-70. Epub 2006 Sep 6.

PMID:
16956974
48.

Melanesian and Asian origins of Polynesians: mtDNA and Y chromosome gradients across the Pacific.

Kayser M, Brauer S, Cordaux R, Casto A, Lao O, Zhivotovsky LA, Moyse-Faurie C, Rutledge RB, Schiefenhoevel W, Gil D, Lin AA, Underhill PA, Oefner PJ, Trent RJ, Stoneking M.

Mol Biol Evol. 2006 Nov;23(11):2234-44. Epub 2006 Aug 21.

PMID:
16923821
49.
50.

Male amelogenin dropouts: phylogenetic context, origins and implications.

Cadenas AM, Regueiro M, Gayden T, Singh N, Zhivotovsky LA, Underhill PA, Herrera RJ.

Forensic Sci Int. 2007 Mar 2;166(2-3):155-63. Epub 2006 Jun 15.

PMID:
16781100

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