Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 42

1.

Draft Genome Sequence of Anoxybacillusayderensis Strain MT-Cab (Firmicutes).

Thiel V, Tank M, Tomsho LP, Burhans R, Gay SE, Hamilton TL, Schuster SC, Bryant DA.

Genome Announc. 2017 Jun 29;5(26). pii: e00547-17. doi: 10.1128/genomeA.00547-17.

2.

Complete Genome Sequence of the Photoautotrophic and Bacteriochlorophyll e-Synthesizing Green Sulfur Bacterium Chlorobaculum limnaeum DSM 1677T.

Tank M, Liu Z, Frigaard NU, Tomsho LP, Schuster SC, Bryant DA.

Genome Announc. 2017 Jun 15;5(24). pii: e00529-17. doi: 10.1128/genomeA.00529-17.

3.

Tumor-Infiltrating Lymphocytes, Crohn's-Like Lymphoid Reaction, and Survival From Colorectal Cancer.

Rozek LS, Schmit SL, Greenson JK, Tomsho LP, Rennert HS, Rennert G, Gruber SB.

J Natl Cancer Inst. 2016 May 12;108(8). doi: 10.1093/jnci/djw027. Print 2016 Aug.

4.

Large-scale mitogenomics enables insights into Schizophora (Diptera) radiation and population diversity.

Junqueira AC, Azeredo-Espin AM, Paulo DF, Marinho MA, Tomsho LP, Drautz-Moses DI, Purbojati RW, Ratan A, Schuster SC.

Sci Rep. 2016 Feb 25;6:21762. doi: 10.1038/srep21762.

5.

Draft Genome Sequence of the Deinococcus-Thermus Bacterium Meiothermus ruber Strain A.

Thiel V, Tomsho LP, Burhans R, Gay SE, Schuster SC, Ward DM, Bryant DA.

Genome Announc. 2015 Mar 26;3(2). pii: e00202-15. doi: 10.1128/genomeA.00202-15.

6.

Comparative and population mitogenomic analyses of Madagascar's extinct, giant 'subfossil' lemurs.

Kistler L, Ratan A, Godfrey LR, Crowley BE, Hughes CE, Lei R, Cui Y, Wood ML, Muldoon KM, Andriamialison H, McGraw JJ, Tomsho LP, Schuster SC, Miller W, Louis EE, Yoder AD, Malhi RS, Perry GH.

J Hum Evol. 2015 Feb;79:45-54. doi: 10.1016/j.jhevol.2014.06.016. Epub 2014 Dec 16.

PMID:
25523037
7.

Draft Genome Sequence of a Sulfide-Oxidizing, Autotrophic Filamentous Anoxygenic Phototrophic Bacterium, Chloroflexus sp. Strain MS-G (Chloroflexi).

Thiel V, Hamilton TL, Tomsho LP, Burhans R, Gay SE, Schuster SC, Ward DM, Bryant DA.

Genome Announc. 2014 Sep 4;2(5). pii: e00872-14. doi: 10.1128/genomeA.00872-14.

8.

Draft Genome Sequence of the Moderately Thermophilic Bacterium Schleiferia thermophila Strain Yellowstone (Bacteroidetes).

Thiel V, Hamilton TL, Tomsho LP, Burhans R, Gay SE, Ramaley RF, Schuster SC, Steinke L, Bryant DA.

Genome Announc. 2014 Aug 28;2(4). pii: e00860-14. doi: 10.1128/genomeA.00860-14.

9.

Coupled reductive and oxidative sulfur cycling in the phototrophic plate of a meromictic lake.

Hamilton TL, Bovee RJ, Thiel V, Sattin SR, Mohr W, Schaperdoth I, Vogl K, Gilhooly WP 3rd, Lyons TW, Tomsho LP, Schuster SC, Overmann J, Bryant DA, Pearson A, Macalady JL.

Geobiology. 2014 Sep;12(5):451-68. doi: 10.1111/gbi.12092. Epub 2014 Jun 28.

PMID:
24976102
10.

A mutation burst during the acute phase of Helicobacter pylori infection in humans and rhesus macaques.

Linz B, Windsor HM, McGraw JJ, Hansen LM, Gajewski JP, Tomsho LP, Hake CM, Solnick JV, Schuster SC, Marshall BJ.

Nat Commun. 2014 Jun 13;5:4165. doi: 10.1038/ncomms5165.

PMID:
24924186
11.

Genome Sequence of the Thermophilic Cyanobacterium Thermosynechococcus sp. Strain NK55a.

Stolyar S, Liu Z, Thiel V, Tomsho LP, Pinel N, Nelson WC, Lindemann SR, Romine MF, Haruta S, Schuster SC, Bryant DA, Fredrickson JK.

Genome Announc. 2014 Jan 30;2(1). pii: e01060-13. doi: 10.1128/genomeA.01060-13.

12.

Genomic analysis reveals key aspects of prokaryotic symbiosis in the phototrophic consortium "Chlorochromatium aggregatum".

Liu Z, Müller J, Li T, Alvey RM, Vogl K, Frigaard NU, Rockwell NC, Boyd ES, Tomsho LP, Schuster SC, Henke P, Rohde M, Overmann J, Bryant DA.

Genome Biol. 2013 Nov 22;14(11):R127. doi: 10.1186/gb-2013-14-11-r127.

13.

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change.

Miller W, Schuster SC, Welch AJ, Ratan A, Bedoya-Reina OC, Zhao F, Kim HL, Burhans RC, Drautz DI, Wittekindt NE, Tomsho LP, Ibarra-Laclette E, Herrera-Estrella L, Peacock E, Farley S, Sage GK, Rode K, Obbard M, Montiel R, Bachmann L, Ingólfsson O, Aars J, Mailund T, Wiig O, Talbot SL, Lindqvist C.

Proc Natl Acad Sci U S A. 2012 Sep 4;109(36):E2382-90. doi: 10.1073/pnas.1210506109. Epub 2012 Jul 23.

14.

Novel Degenerate PCR Method for Whole-Genome Amplification Applied to Peru Margin (ODP Leg 201) Subsurface Samples.

Martino AJ, Rhodes ME, Biddle JF, Brandt LD, Tomsho LP, House CH.

Front Microbiol. 2012 Jan 23;3:17. doi: 10.3389/fmicb.2012.00017. eCollection 2012.

15.

Metagenomic profile of the bacterial communities associated with Ixodes ricinus ticks.

Carpi G, Cagnacci F, Wittekindt NE, Zhao F, Qi J, Tomsho LP, Drautz DI, Rizzoli A, Schuster SC.

PLoS One. 2011;6(10):e25604. doi: 10.1371/journal.pone.0025604. Epub 2011 Oct 13.

16.

Complete genome of Candidatus Chloracidobacterium thermophilum, a chlorophyll-based photoheterotroph belonging to the phylum Acidobacteria.

Garcia Costas AM, Liu Z, Tomsho LP, Schuster SC, Ward DM, Bryant DA.

Environ Microbiol. 2012 Jan;14(1):177-90. doi: 10.1111/j.1462-2920.2011.02592.x. Epub 2011 Sep 27.

PMID:
21951563
17.

Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil).

Miller W, Hayes VM, Ratan A, Petersen DC, Wittekindt NE, Miller J, Walenz B, Knight J, Qi J, Zhao F, Wang Q, Bedoya-Reina OC, Katiyar N, Tomsho LP, Kasson LM, Hardie RA, Woodbridge P, Tindall EA, Bertelsen MF, Dixon D, Pyecroft S, Helgen KM, Lesk AM, Pringle TH, Patterson N, Zhang Y, Kreiss A, Woods GM, Jones ME, Schuster SC.

Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12348-53. doi: 10.1073/pnas.1102838108. Epub 2011 Jun 27. Erratum in: Proc Natl Acad Sci U S A. 2012 Nov 6;109(45):18625.

18.

Metatranscriptomic analyses of chlorophototrophs of a hot-spring microbial mat.

Liu Z, Klatt CG, Wood JM, Rusch DB, Ludwig M, Wittekindt N, Tomsho LP, Schuster SC, Ward DM, Bryant DA.

ISME J. 2011 Aug;5(8):1279-90. doi: 10.1038/ismej.2011.37. Epub 2011 Jun 23.

19.

Ancestral polyploidy in seed plants and angiosperms.

Jiao Y, Wickett NJ, Ayyampalayam S, Chanderbali AS, Landherr L, Ralph PE, Tomsho LP, Hu Y, Liang H, Soltis PS, Soltis DE, Clifton SW, Schlarbaum SE, Schuster SC, Ma H, Leebens-Mack J, dePamphilis CW.

Nature. 2011 May 5;473(7345):97-100. doi: 10.1038/nature09916. Epub 2011 Apr 10.

PMID:
21478875
20.

Nodeomics: pathogen detection in vertebrate lymph nodes using meta-transcriptomics.

Wittekindt NE, Padhi A, Schuster SC, Qi J, Zhao F, Tomsho LP, Kasson LR, Packard M, Cross P, Poss M.

PLoS One. 2010 Oct 18;5(10):e13432. doi: 10.1371/journal.pone.0013432.

21.

Diverse somatic mutation patterns and pathway alterations in human cancers.

Kan Z, Jaiswal BS, Stinson J, Janakiraman V, Bhatt D, Stern HM, Yue P, Haverty PM, Bourgon R, Zheng J, Moorhead M, Chaudhuri S, Tomsho LP, Peters BA, Pujara K, Cordes S, Davis DP, Carlton VE, Yuan W, Li L, Wang W, Eigenbrot C, Kaminker JS, Eberhard DA, Waring P, Schuster SC, Modrusan Z, Zhang Z, Stokoe D, de Sauvage FJ, Faham M, Seshagiri S.

Nature. 2010 Aug 12;466(7308):869-73. doi: 10.1038/nature09208. Epub 2010 Jul 28.

PMID:
20668451
22.

Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear.

Lindqvist C, Schuster SC, Sun Y, Talbot SL, Qi J, Ratan A, Tomsho LP, Kasson L, Zeyl E, Aars J, Miller W, Ingólfsson O, Bachmann L, Wiig O.

Proc Natl Acad Sci U S A. 2010 Mar 16;107(11):5053-7. doi: 10.1073/pnas.0914266107. Epub 2010 Mar 1. Erratum in: Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):6118.

23.

Complete Khoisan and Bantu genomes from southern Africa.

Schuster SC, Miller W, Ratan A, Tomsho LP, Giardine B, Kasson LR, Harris RS, Petersen DC, Zhao F, Qi J, Alkan C, Kidd JM, Sun Y, Drautz DI, Bouffard P, Muzny DM, Reid JG, Nazareth LV, Wang Q, Burhans R, Riemer C, Wittekindt NE, Moorjani P, Tindall EA, Danko CG, Teo WS, Buboltz AM, Zhang Z, Ma Q, Oosthuysen A, Steenkamp AW, Oostuisen H, Venter P, Gajewski J, Zhang Y, Pugh BF, Makova KD, Nekrutenko A, Mardis ER, Patterson N, Pringle TH, Chiaromonte F, Mullikin JC, Eichler EE, Hardison RC, Gibbs RA, Harkins TT, Hayes VM.

Nature. 2010 Feb 18;463(7283):943-7. doi: 10.1038/nature08795.

24.

Characterization of meiotic crossovers and gene conversion by whole-genome sequencing in Saccharomyces cerevisiae.

Qi J, Wijeratne AJ, Tomsho LP, Hu Y, Schuster SC, Ma H.

BMC Genomics. 2009 Oct 15;10:475. doi: 10.1186/1471-2164-10-475.

25.

Comparison of next generation sequencing technologies for transcriptome characterization.

Wall PK, Leebens-Mack J, Chanderbali AS, Barakat A, Wolcott E, Liang H, Landherr L, Tomsho LP, Hu Y, Carlson JE, Ma H, Schuster SC, Soltis DE, Soltis PS, Altman N, dePamphilis CW.

BMC Genomics. 2009 Aug 1;10:347. doi: 10.1186/1471-2164-10-347.

26.

Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution.

Willerslev E, Gilbert MT, Binladen J, Ho SY, Campos PF, Ratan A, Tomsho LP, da Fonseca RR, Sher A, Kuznetsova TV, Nowak-Kemp M, Roth TL, Miller W, Schuster SC.

BMC Evol Biol. 2009 May 11;9:95. doi: 10.1186/1471-2148-9-95.

27.

The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus).

Miller W, Drautz DI, Janecka JE, Lesk AM, Ratan A, Tomsho LP, Packard M, Zhang Y, McClellan LR, Qi J, Zhao F, Gilbert MT, Dalén L, Arsuaga JL, Ericson PG, Huson DH, Helgen KM, Murphy WJ, Götherström A, Schuster SC.

Genome Res. 2009 Feb;19(2):213-20. doi: 10.1101/gr.082628.108. Epub 2009 Jan 12.

28.

Sequencing the nuclear genome of the extinct woolly mammoth.

Miller W, Drautz DI, Ratan A, Pusey B, Qi J, Lesk AM, Tomsho LP, Packard MD, Zhao F, Sher A, Tikhonov A, Raney B, Patterson N, Lindblad-Toh K, Lander ES, Knight JR, Irzyk GP, Fredrikson KM, Harkins TT, Sheridan S, Pringle T, Schuster SC.

Nature. 2008 Nov 20;456(7220):387-90. doi: 10.1038/nature07446.

PMID:
19020620
29.

Pathologic predictors of microsatellite instability in colorectal cancer.

Greenson JK, Huang SC, Herron C, Moreno V, Bonner JD, Tomsho LP, Ben-Izhak O, Cohen HI, Trougouboff P, Bejhar J, Sova Y, Pinchev M, Rennert G, Gruber SB.

Am J Surg Pathol. 2009 Jan;33(1):126-33. doi: 10.1097/PAS.0b013e31817ec2b1.

30.

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome.

Mavrich TN, Ioshikhes IP, Venters BJ, Jiang C, Tomsho LP, Qi J, Schuster SC, Albert I, Pugh BF.

Genome Res. 2008 Jul;18(7):1073-83. doi: 10.1101/gr.078261.108. Epub 2008 Jun 12.

31.

Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes.

Gilbert MT, Drautz DI, Lesk AM, Ho SY, Qi J, Ratan A, Hsu CH, Sher A, Dalén L, Götherström A, Tomsho LP, Rendulic S, Packard M, Campos PF, Kuznetsova TV, Shidlovskiy F, Tikhonov A, Willerslev E, Iacumin P, Buigues B, Ericson PG, Germonpré M, Kosintsev P, Nikolaev V, Nowak-Kemp M, Knight JR, Irzyk GP, Perbost CS, Fredrikson KM, Harkins TT, Sheridan S, Miller W, Schuster SC.

Proc Natl Acad Sci U S A. 2008 Jun 17;105(24):8327-32. doi: 10.1073/pnas.0802315105. Epub 2008 Jun 9.

32.

Nucleosome organization in the Drosophila genome.

Mavrich TN, Jiang C, Ioshikhes IP, Li X, Venters BJ, Zanton SJ, Tomsho LP, Qi J, Glaser RL, Schuster SC, Gilmour DS, Albert I, Pugh BF.

Nature. 2008 May 15;453(7193):358-62. doi: 10.1038/nature06929. Epub 2008 Apr 13.

33.

Whole-genome shotgun sequencing of mitochondria from ancient hair shafts.

Gilbert MT, Tomsho LP, Rendulic S, Packard M, Drautz DI, Sher A, Tikhonov A, Dalén L, Kuznetsova T, Kosintsev P, Campos PF, Higham T, Collins MJ, Wilson AS, Shidlovskiy F, Buigues B, Ericson PG, Germonpré M, Götherström A, Iacumin P, Nikolaev V, Nowak-Kemp M, Willerslev E, Knight JR, Irzyk GP, Perbost CS, Fredrikson KM, Harkins TT, Sheridan S, Miller W, Schuster SC.

Science. 2007 Sep 28;317(5846):1927-30.

34.

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

Albert I, Mavrich TN, Tomsho LP, Qi J, Zanton SJ, Schuster SC, Pugh BF.

Nature. 2007 Mar 29;446(7135):572-6.

PMID:
17392789
35.

APC I1307K and the risk of prostate cancer.

Poynter JN, Cooney KA, Bonner JD, White KA, Tomsho LP, Rennert G, Gruber SB.

Cancer Epidemiol Biomarkers Prev. 2006 Mar;15(3):468-73.

36.

Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA.

Poinar HN, Schwarz C, Qi J, Shapiro B, Macphee RD, Buigues B, Tikhonov A, Huson DH, Tomsho LP, Auch A, Rampp M, Miller W, Schuster SC.

Science. 2006 Jan 20;311(5759):392-4. Epub 2005 Dec 20.

37.

Colorectal polyps in carriers of the APC I1307K polymorphism.

Rennert G, Almog R, Tomsho LP, Low M, Pinchev M, Chaiter Y, Bonner JD, Rennert HS, Greenson JK, Gruber SB.

Dis Colon Rectum. 2005 Dec;48(12):2317-21.

38.

EGF gene polymorphism and the risk of incident primary melanoma.

Amend KL, Elder JT, Tomsho LP, Bonner JD, Johnson TM, Schwartz J, Berwick M, Gruber SB.

Cancer Res. 2004 Apr 15;64(8):2668-72.

39.

BRCA1 and BRCA2 founder mutations and the risk of colorectal cancer.

Niell BL, Rennert G, Bonner JD, Almog R, Tomsho LP, Gruber SB.

J Natl Cancer Inst. 2004 Jan 7;96(1):15-21.

PMID:
14709734
40.

RNASEL mutations in hereditary prostate cancer.

Chen H, Griffin AR, Wu YQ, Tomsho LP, Zuhlke KA, Lange EM, Gruber SB, Cooney KA.

J Med Genet. 2003 Mar;40(3):e21. No abstract available.

41.

R726L androgen receptor mutation is uncommon in prostate cancer families in the united states.

Gruber SB, Chen H, Tomsho LP, Lee N, Perrone EE, Cooney KA.

Prostate. 2003 Mar 1;54(4):306-9.

42.

BLM heterozygosity and the risk of colorectal cancer.

Gruber SB, Ellis NA, Scott KK, Almog R, Kolachana P, Bonner JD, Kirchhoff T, Tomsho LP, Nafa K, Pierce H, Low M, Satagopan J, Rennert H, Huang H, Greenson JK, Groden J, Rapaport B, Shia J, Johnson S, Gregersen PK, Harris CC, Boyd J, Rennert G, Offit K.

Science. 2002 Sep 20;297(5589):2013. No abstract available. Erratum in: Science 2002 Oct 25;298(5594):751.

Supplemental Content

Loading ...
Support Center