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Newborn screening for X-linked adrenoleukodystrophy: evidence summary and advisory committee recommendation.

Kemper AR, Brosco J, Comeau AM, Green NS, Grosse SD, Jones E, Kwon JM, Lam WK, Ojodu J, Prosser LA, Tanksley S.

Genet Med. 2017 Jan;19(1):121-126. doi: 10.1038/gim.2016.68. Epub 2016 Jun 23.


A study on the genetic relationships of Avena taxa and the origins of hexaploid oat.

Chew P, Meade K, Hayes A, Harjes C, Bao Y, Beattie AD, Puddephat I, Gusmini G, Tanksley SD.

Theor Appl Genet. 2016 Jul;129(7):1405-15. doi: 10.1007/s00122-016-2712-4. Epub 2016 Apr 5.


Evaluating Harms in the Assessment of Net Benefit: A Framework for Newborn Screening Condition Review.

Goldenberg AJ, Comeau AM, Grosse SD, Tanksley S, Prosser LA, Ojodu J, Botkin JR, Kemper AR, Green NS.

Matern Child Health J. 2016 Mar;20(3):693-700. doi: 10.1007/s10995-015-1869-9.


Newborn screening for severe combined immunodeficiency in 11 screening programs in the United States.

Kwan A, Abraham RS, Currier R, Brower A, Andruszewski K, Abbott JK, Baker M, Ballow M, Bartoshesky LE, Bonilla FA, Brokopp C, Brooks E, Caggana M, Celestin J, Church JA, Comeau AM, Connelly JA, Cowan MJ, Cunningham-Rundles C, Dasu T, Dave N, De La Morena MT, Duffner U, Fong CT, Forbes L, Freedenberg D, Gelfand EW, Hale JE, Hanson IC, Hay BN, Hu D, Infante A, Johnson D, Kapoor N, Kay DM, Kohn DB, Lee R, Lehman H, Lin Z, Lorey F, Abdel-Mageed A, Manning A, McGhee S, Moore TB, Naides SJ, Notarangelo LD, Orange JS, Pai SY, Porteus M, Rodriguez R, Romberg N, Routes J, Ruehle M, Rubenstein A, Saavedra-Matiz CA, Scott G, Scott PM, Secord E, Seroogy C, Shearer WT, Siegel S, Silvers SK, Stiehm ER, Sugerman RW, Sullivan JL, Tanksley S, Tierce ML 4th, Verbsky J, Vogel B, Walker R, Walkovich K, Walter JE, Wasserman RL, Watson MS, Weinberg GA, Weiner LB, Wood H, Yates AB, Puck JM, Bonagura VR.

JAMA. 2014 Aug 20;312(7):729-38. doi: 10.1001/jama.2014.9132. Erratum in: JAMA. 2014 Nov 26;312(20):2169. Bonagura, Vincent R [Added].


Newborn screening: from Guthrie to whole genome sequencing.

Caggana M, Jones EA, Shahied SI, Tanksley S, Hermerath CA, Lubin IM.

Public Health Rep. 2013 Sep-Oct;128 Suppl 2:14-9. No abstract available.


Selfing for the design of genomic selection experiments in biparental plant populations.

McClosky B, LaCombe J, Tanksley SD.

Theor Appl Genet. 2013 Nov;126(11):2907-20. doi: 10.1007/s00122-013-2182-x. Epub 2013 Aug 27.


Decision-making process for conditions nominated to the recommended uniform screening panel: statement of the US Department of Health and Human Services Secretary's Advisory Committee on Heritable Disorders in Newborns and Children.

Kemper AR, Green NS, Calonge N, Lam WK, Comeau AM, Goldenberg AJ, Ojodu J, Prosser LA, Tanksley S, Bocchini JA Jr.

Genet Med. 2014 Feb;16(2):183-7. doi: 10.1038/gim.2013.98. Epub 2013 Aug 1.


The impact of recombination on short-term selection gain in plant breeding experiments.

McClosky B, Tanksley SD.

Theor Appl Genet. 2013 Sep;126(9):2299-312. doi: 10.1007/s00122-013-2136-3. Epub 2013 Jun 13.


Traumatic Visual Loss and a Limitation of Point-of-Care Ocular Ultrasound: A Case Report.

Nydam T, Tanksley S.

J Spec Oper Med. 2013 Spring;13(1):55-7.


Association between thyroxine levels at birth and choanal atresia or stenosis among infants in Texas, 2004-2007.

Lee LJ, Canfield MA, Hashmi SS, Moffitt KB, Marengo L, Agopian AJ, Belmont JW, Freedenberg D, Tanksley SM, Mitchell LE, Lupo PJ.

Birth Defects Res A Clin Mol Teratol. 2012 Nov;94(11):951-4. doi: 10.1002/bdra.23091. Epub 2012 Nov 2.


The association between neonatal thyroxine and craniosynostosis, Texas, 2004-2007.

Hashmi SS, Canfield MA, Marengo L, Moffitt KB, Belmont JW, Freedenberg D, Tanksley SM, Lupo PJ.

Birth Defects Res A Clin Mol Teratol. 2012 Dec;94(12):1004-9. doi: 10.1002/bdra.23077. Epub 2012 Oct 26.


Location-dependent empirical thresholds for quantitative trait mapping.

LaCombe J, McClosky B, Tanksley S.

G3 (Bethesda). 2012 Sep;2(9):1035-9. doi: 10.1534/g3.112.003517. Epub 2012 Sep 1.


Chromosomal evolution in the plant family Solanaceae.

Wu F, Tanksley SD.

BMC Genomics. 2010 Mar 17;11:182. doi: 10.1186/1471-2164-11-182.


COSII genetic maps of two diploid Nicotiana species provide a detailed picture of synteny with tomato and insights into chromosome evolution in tetraploid N. tabacum.

Wu F, Eannetta NT, Xu Y, Plieske J, Ganal M, Pozzi C, Bakaher N, Tanksley SD.

Theor Appl Genet. 2010 Feb;120(4):809-27. doi: 10.1007/s00122-009-1206-z. Epub 2009 Nov 17.


Do potatoes and tomatoes have a single evolutionary history, and what proportion of the genome supports this history?

Rodriguez F, Wu F, Ané C, Tanksley S, Spooner DM.

BMC Evol Biol. 2009 Aug 7;9:191. doi: 10.1186/1471-2148-9-191.


A COSII genetic map of the pepper genome provides a detailed picture of synteny with tomato and new insights into recent chromosome evolution in the genus Capsicum.

Wu F, Eannetta NT, Xu Y, Durrett R, Mazourek M, Jahn MM, Tanksley SD.

Theor Appl Genet. 2009 May;118(7):1279-93. doi: 10.1007/s00122-009-0980-y. Epub 2009 Feb 20.


Natural variation in an ABC transporter gene associated with seed size evolution in tomato species.

Orsi CH, Tanksley SD.

PLoS Genet. 2009 Jan;5(1):e1000347. doi: 10.1371/journal.pgen.1000347. Epub 2009 Jan 23.


EST, COSII, and arbitrary gene markers give similar estimates of nucleotide diversity in cultivated tomato (Solanum lycopersicum L.).

Labate JA, Robertson LD, Wu F, Tanksley SD, Baldo AM.

Theor Appl Genet. 2009 Mar;118(5):1005-14. doi: 10.1007/s00122-008-0957-2. Epub 2009 Jan 20.


A detailed synteny map of the eggplant genome based on conserved ortholog set II (COSII) markers.

Wu F, Eannetta NT, Xu Y, Tanksley SD.

Theor Appl Genet. 2009 Mar;118(5):927-35. doi: 10.1007/s00122-008-0950-9. Epub 2009 Jan 9.


Sequencing and comparative analysis of a conserved syntenic segment in the Solanaceae.

Wang Y, Diehl A, Wu F, Vrebalov J, Giovannoni J, Siepel A, Tanksley SD.

Genetics. 2008 Sep;180(1):391-408. doi: 10.1534/genetics.108.087981. Epub 2008 Aug 24.


The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL).

Mueller LA, Tanksley SD, Giovannoni JJ, van Eck J, Stack S, Choi D, Kim BD, Chen M, Cheng Z, Li C, Ling H, Xue Y, Seymour G, Bishop G, Bryan G, Sharma R, Khurana J, Tyagi A, Chattopadhyay D, Singh NK, Stiekema W, Lindhout P, Jesse T, Lankhorst RK, Bouzayen M, Shibata D, Tabata S, Granell A, Botella MA, Giuliano G, Frusciante L, Causse M, Zamir D.

Comp Funct Genomics. 2005;6(3):153-8. doi: 10.1002/cfg.468.


Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication.

Cong B, Barrero LS, Tanksley SD.

Nat Genet. 2008 Jun;40(6):800-4. doi: 10.1038/ng.144. Epub 2008 May 11.


Differential regulation of grain sucrose accumulation and metabolism in Coffea arabica (Arabica) and Coffea canephora (Robusta) revealed through gene expression and enzyme activity analysis.

Privat I, Foucrier S, Prins A, Epalle T, Eychenne M, Kandalaft L, Caillet V, Lin C, Tanksley S, Foyer C, McCarthy J.

New Phytol. 2008;178(4):781-97. doi: 10.1111/j.1469-8137.2008.02425.x. Epub 2008 Mar 31.


The SGN comparative map viewer.

Mueller LA, Mills AA, Skwarecki B, Buels RM, Menda N, Tanksley SD.

Bioinformatics. 2008 Feb 1;24(3):422-3. doi: 10.1093/bioinformatics/btm597. Epub 2008 Jan 17.


Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes.

Chen KY, Cong B, Wing R, Vrebalov J, Tanksley SD.

Science. 2007 Oct 26;318(5850):643-5.


An investigation of carotenoid biosynthesis in Coffea canephora and Coffea arabica.

Simkin AJ, Moreau H, Kuntz M, Pagny G, Lin C, Tanksley S, McCarthy J.

J Plant Physiol. 2008 Jul 7;165(10):1087-106. Epub 2007 Oct 17.


Cloning, expression, crystallization and preliminary X-ray analysis of the XMT and DXMT N-methyltransferases from Coffea canephora (robusta).

McCarthy AA, Biget L, Lin C, Petiard V, Tanksley SD, McCarthy JG.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Apr 1;63(Pt 4):304-7. Epub 2007 Mar 12.


EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot.

Carlson JE, Leebens-Mack JH, Wall PK, Zahn LM, Mueller LA, Landherr LL, Hu Y, Ilut DC, Arrington JM, Choirean S, Becker A, Field D, Tanksley SD, Ma H, dePamphilis CW.

Plant Mol Biol. 2006 Oct;62(3):351-69. Epub 2006 Aug 17.


CpG + CpNpG analysis of protein-coding sequences from tomato.

Hobolth A, Nielsen R, Wang Y, Wu F, Tanksley SD.

Mol Biol Evol. 2006 Jun;23(6):1318-23. Epub 2006 Apr 6.


Isolation and characterization of cDNA encoding three dehydrins expressed during Coffea canephora (Robusta) grain development.

Hinniger C, Caillet V, Michoux F, Ben Amor M, Tanksley S, Lin C, McCarthy J.

Ann Bot. 2006 May;97(5):755-65. Epub 2006 Feb 27.


Euchromatin and pericentromeric heterochromatin: comparative composition in the tomato genome.

Wang Y, Tang X, Cheng Z, Mueller L, Giovannoni J, Tanksley SD.

Genetics. 2006 Apr;172(4):2529-40. Epub 2006 Feb 19.


Oleosin gene family of Coffea canephora: quantitative expression analysis of five oleosin genes in developing and germinating coffee grain.

Simkin AJ, Qian T, Caillet V, Michoux F, Ben Amor M, Lin C, Tanksley S, McCarthy J.

J Plant Physiol. 2006 May;163(7):691-708. Epub 2006 Jan 26.


Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts.

Lin C, Mueller LA, Mc Carthy J, Crouzillat D, Pétiard V, Tanksley SD.

Theor Appl Genet. 2005 Dec;112(1):114-30. Epub 2005 Nov 5.


Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development.

Alba R, Payton P, Fei Z, McQuinn R, Debbie P, Martin GB, Tanksley SD, Giovannoni JJ.

Plant Cell. 2005 Nov;17(11):2954-65. Epub 2005 Oct 21.


Utilization of tomato microarrays for comparative gene expression analysis in the Solanaceae.

Moore S, Payton P, Wright M, Tanksley S, Giovannoni J.

J Exp Bot. 2005 Nov;56(421):2885-95. Epub 2005 Oct 10.


Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.

Wang Y, van der Hoeven RS, Nielsen R, Mueller LA, Tanksley SD.

Theor Appl Genet. 2005 Dec;112(1):72-84. Epub 2005 Oct 6.


Bayesian and maximum likelihood estimation of genetic maps.

York TL, Durrett RT, Tanksley S, Nielsen R.

Genet Res. 2005 Apr;85(2):159-68.


The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond.

Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD.

Plant Physiol. 2005 Jul;138(3):1310-7.


Development of a set of PCR-based anchor markers encompassing the tomato genome and evaluation of their usefulness for genetics and breeding experiments.

Frary A, Xu Y, Liu J, Mitchell S, Tedeschi E, Tanksley S.

Theor Appl Genet. 2005 Jul;111(2):291-312. Epub 2005 May 31.


Comparative genome analyses of Arabidopsis spp.: inferring chromosomal rearrangement events in the evolutionary history of A. thaliana.

Yogeeswaran K, Frary A, York TL, Amenta A, Lesser AH, Nasrallah JB, Tanksley SD, Nasrallah ME.

Genome Res. 2005 Apr;15(4):505-15.


Floral gene resources from basal angiosperms for comparative genomics research.

Albert VA, Soltis DE, Carlson JE, Farmerie WG, Wall PK, Ilut DC, Solow TM, Mueller LA, Landherr LL, Hu Y, Buzgo M, Kim S, Yoo MJ, Frohlich MW, Perl-Treves R, Schlarbaum SE, Bliss BJ, Zhang X, Tanksley SD, Oppenheimer DG, Soltis PS, Ma H, DePamphilis CW, Leebens-Mack JH.

BMC Plant Biol. 2005 Mar 30;5:5.


Comprehensive EST analysis of tomato and comparative genomics of fruit ripening.

Fei Z, Tang X, Alba RM, White JA, Ronning CM, Martin GB, Tanksley SD, Giovannoni JJ.

Plant J. 2004 Oct;40(1):47-59.


ESTs, cDNA microarrays, and gene expression profiling: tools for dissecting plant physiology and development.

Alba R, Fei Z, Payton P, Liu Y, Moore SL, Debbie P, Cohn J, D'Ascenzo M, Gordon JS, Rose JK, Martin G, Tanksley SD, Bouzayen M, Jahn MM, Giovannoni J.

Plant J. 2004 Sep;39(5):697-714.


Evaluating the genetic basis of multiple-locule fruit in a broad cross section of tomato cultivars.

Barrero LS, Tanksley SD.

Theor Appl Genet. 2004 Aug;109(3):669-79. Epub 2004 May 15.


A comparative study of the genetic bases of natural variation in tomato leaf, sepal, and petal morphology.

Frary A, Fritz LA, Tanksley SD.

Theor Appl Genet. 2004 Aug;109(3):523-33. Epub 2004 May 19.


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