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Items: 10

1.

Alignment modulates ancestral sequence reconstruction accuracy.

Vialle RA, Tamuri AU, Goldman N.

Mol Biol Evol. 2018 Apr 3. doi: 10.1093/molbev/msy055. [Epub ahead of print]

PMID:
29618097
2.

ALVIS: interactive non-aggregative visualization and explorative analysis of multiple sequence alignments.

Schwarz RF, Tamuri AU, Kultys M, King J, Godwin J, Florescu AM, Schultz J, Goldman N.

Nucleic Acids Res. 2016 May 5;44(8):e77. doi: 10.1093/nar/gkw022. Epub 2016 Jan 26.

3.

Transcriptional diversity during lineage commitment of human blood progenitors.

Chen L, Kostadima M, Martens JHA, Canu G, Garcia SP, Turro E, Downes K, Macaulay IC, Bielczyk-Maczynska E, Coe S, Farrow S, Poudel P, Burden F, Jansen SBG, Astle WJ, Attwood A, Bariana T, de Bono B, Breschi A, Chambers JC, Consortium B, Choudry FA, Clarke L, Coupland P, van der Ent M, Erber WN, Jansen JH, Favier R, Fenech ME, Foad N, Freson K, van Geet C, Gomez K, Guigo R, Hampshire D, Kelly AM, Kerstens HHD, Kooner JS, Laffan M, Lentaigne C, Labalette C, Martin T, Meacham S, Mumford A, Nürnberg S, Palumbo E, van der Reijden BA, Richardson D, Sammut SJ, Slodkowicz G, Tamuri AU, Vasquez L, Voss K, Watt S, Westbury S, Flicek P, Loos R, Goldman N, Bertone P, Read RJ, Richardson S, Cvejic A, Soranzo N, Ouwehand WH, Stunnenberg HG, Frontini M, Rendon A.

Science. 2014 Sep 26;345(6204):1251033. doi: 10.1126/science.1251033.

4.

Genome sequencing of normal cells reveals developmental lineages and mutational processes.

Behjati S, Huch M, van Boxtel R, Karthaus W, Wedge DC, Tamuri AU, Martincorena I, Petljak M, Alexandrov LB, Gundem G, Tarpey PS, Roerink S, Blokker J, Maddison M, Mudie L, Robinson B, Nik-Zainal S, Campbell P, Goldman N, van de Wetering M, Cuppen E, Clevers H, Stratton MR.

Nature. 2014 Sep 18;513(7518):422-425. doi: 10.1038/nature13448. Epub 2014 Jun 29.

5.

A penalized-likelihood method to estimate the distribution of selection coefficients from phylogenetic data.

Tamuri AU, Goldman N, dos Reis M.

Genetics. 2014 May;197(1):257-71. doi: 10.1534/genetics.114.162263. Epub 2014 Feb 14.

6.

SMIM1 underlies the Vel blood group and influences red blood cell traits.

Cvejic A, Haer-Wigman L, Stephens JC, Kostadima M, Smethurst PA, Frontini M, van den Akker E, Bertone P, Bielczyk-Maczyńska E, Farrow S, Fehrmann RS, Gray A, de Haas M, Haver VG, Jordan G, Karjalainen J, Kerstens HH, Kiddle G, Lloyd-Jones H, Needs M, Poole J, Soussan AA, Rendon A, Rieneck K, Sambrook JG, Schepers H, Silljé HHW, Sipos B, Swinkels D, Tamuri AU, Verweij N, Watkins NA, Westra HJ, Stemple D, Franke L, Soranzo N, Stunnenberg HG, Goldman N, van der Harst P, van der Schoot CE, Ouwehand WH, Albers CA.

Nat Genet. 2013 May;45(5):542-545. doi: 10.1038/ng.2603. Epub 2013 Apr 7.

7.

Estimating the distribution of selection coefficients from phylogenetic data using sitewise mutation-selection models.

Tamuri AU, dos Reis M, Goldstein RA.

Genetics. 2012 Mar;190(3):1101-15. doi: 10.1534/genetics.111.136432. Epub 2011 Dec 29.

8.

Charting the host adaptation of influenza viruses.

dos Reis M, Tamuri AU, Hay AJ, Goldstein RA.

Mol Biol Evol. 2011 Jun;28(6):1755-67. doi: 10.1093/molbev/msq317. Epub 2010 Nov 25.

9.

ArchSchema: a tool for interactive graphing of related Pfam domain architectures.

Tamuri AU, Laskowski RA.

Bioinformatics. 2010 May 1;26(9):1260-1. doi: 10.1093/bioinformatics/btq119. Epub 2010 Mar 17.

PMID:
20299327
10.

Identifying changes in selective constraints: host shifts in influenza.

Tamuri AU, Dos Reis M, Hay AJ, Goldstein RA.

PLoS Comput Biol. 2009 Nov;5(11):e1000564. doi: 10.1371/journal.pcbi.1000564. Epub 2009 Nov 13.

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