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Items: 27


Fragile skin microbiomes in megacities are assembled by a predominantly niche-based process.

Kim HJ, Kim H, Kim JJ, Myeong NR, Kim T, Park T, Kim E, Choi JY, Lee J, An S, Sul WJ.

Sci Adv. 2018 Mar 7;4(3):e1701581. doi: 10.1126/sciadv.1701581. eCollection 2018 Mar.


Cecal microbiome divergence of broiler chickens by sex and body weight.

Lee KC, Kil DY, Sul WJ.

J Microbiol. 2017 Dec;55(12):939-945. doi: 10.1007/s12275-017-7202-0. Epub 2017 Dec 7.


Transcriptome analysis of Pseudomonas sp. from subarctic tundra soil: pathway description and gene discovery for humic acids degradation.

Kim D, Park HJ, Sul WJ, Park H.

Folia Microbiol (Praha). 2017 Dec 1. doi: 10.1007/s12223-017-0573-0. [Epub ahead of print]


Metagenomic SMRT Sequencing-Based Exploration of Novel Lignocellulose-Degrading Capability in Wood Detritus from Torreya nucifera in Bija Forest on Jeju Island.

Oh HN, Lee TK, Park JW, No JH, Kim D, Sul WJ.

J Microbiol Biotechnol. 2017 Sep 28;27(9):1670-1680. doi: 10.4014/jmb.1705.05008.


Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers.

Stedtfeld RD, Stedtfeld TM, Waseem H, Fitschen-Brown M, Guo X, Chai B, Williams MR, Shook T, Logan A, Graham A, Chae JC, Sul WJ, VanHouten J, Cole JR, Zylstra GJ, Tiedje JM, Upham BL, Hashsham SA.

J Environ Manage. 2017 Aug 1;198(Pt 1):213-220. doi: 10.1016/j.jenvman.2017.04.079. Epub 2017 Apr 29.


Collapse of human scalp microbiome network in dandruff and seborrhoeic dermatitis.

Park T, Kim HJ, Myeong NR, Lee HG, Kwack I, Lee J, Kim BJ, Sul WJ, An S.

Exp Dermatol. 2017 Sep;26(9):835-838. doi: 10.1111/exd.13293. Epub 2017 Apr 11.


Methylome Analysis of Two Xanthomonas spp. Using Single-Molecule Real-Time Sequencing.

Seong HJ, Park HJ, Hong E, Lee SC, Sul WJ, Han SW.

Plant Pathol J. 2016 Dec;32(6):500-507. Epub 2016 Dec 1.


Influence of Soil Characteristics and Proximity to Antarctic Research Stations on Abundance of Antibiotic Resistance Genes in Soils.

Wang F, Stedtfeld RD, Kim OS, Chai B, Yang L, Stedtfeld TM, Hong SG, Kim D, Lim HS, Hashsham SA, Tiedje JM, Sul WJ.

Environ Sci Technol. 2016 Dec 6;50(23):12621-12629. Epub 2016 Nov 18.


Degradation of crude oil in a contaminated tidal flat area and the resilience of bacterial community.

Lee J, Han I, Kang BR, Kim SH, Sul WJ, Lee TK.

Mar Pollut Bull. 2017 Jan 15;114(1):296-301. doi: 10.1016/j.marpolbul.2016.09.043. Epub 2016 Sep 23.


Metagenomic insight of nitrogen metabolism in a tannery wastewater treatment plant bioaugmented with the microbial consortium BM-S-1.

Sul WJ, Kim IS, Ekpeghere KI, Song B, Kim BS, Kim HG, Kim JT, Koh SC.

J Environ Sci Health A Tox Hazard Subst Environ Eng. 2016 Nov 9;51(13):1164-72. doi: 10.1080/10934529.2016.1206387. Epub 2016 Jul 28.


Complete genome sequence of antibiotic and anticancer agent violacein producing Massilia sp. strain NR 4-1.

Myeong NR, Seong HJ, Kim HJ, Sul WJ.

J Biotechnol. 2016 Apr 10;223:36-7. doi: 10.1016/j.jbiotec.2016.02.027. Epub 2016 Feb 23.


Metagenomic Analysis of Chicken Gut Microbiota for Improving Metabolism and Health of Chickens - A Review.

Choi KY, Lee TK, Sul WJ.

Asian-Australas J Anim Sci. 2015 Sep;28(9):1217-25. doi: 10.5713/ajas.15.0026.


Functional Identification of OphR, an IclR Family Transcriptional Regulator Involved in the Regulation of the Phthalate Catabolic Operon in Rhodococcus sp. Strain DK17.

Choi KY, Kang BS, Nam MH, Sul WJ, Kim E.

Indian J Microbiol. 2015 Sep;55(3):313-8. doi: 10.1007/s12088-015-0529-5. Epub 2015 Apr 18.


Temporal changes in soil bacterial diversity and humic substances degradation in subarctic tundra soil.

Park HJ, Chae N, Sul WJ, Lee BY, Lee YK, Kim D.

Microb Ecol. 2015 Apr;69(3):668-75. doi: 10.1007/s00248-014-0499-x. Epub 2014 Oct 2.


Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.

Eren AM, Maignien L, Sul WJ, Murphy LG, Grim SL, Morrison HG, Sogin ML.

Methods Ecol Evol. 2013 Dec 1;4(12). doi: 10.1111/2041-210X.12114.


Recently deglaciated high-altitude soils of the Himalaya: diverse environments, heterogenous bacterial communities and long-range dust inputs from the upper troposphere.

Stres B, Sul WJ, Murovec B, Tiedje JM.

PLoS One. 2013 Sep 26;8(9):e76440. doi: 10.1371/journal.pone.0076440. eCollection 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/1406824c-f082-400b-8fc7-4995c97a6249.


Marine bacteria exhibit a bipolar distribution.

Sul WJ, Oliver TA, Ducklow HW, Amaral-Zettler LA, Sogin ML.

Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):2342-7. doi: 10.1073/pnas.1212424110. Epub 2013 Jan 16.


In-feed antibiotic effects on the swine intestinal microbiome.

Looft T, Johnson TA, Allen HK, Bayles DO, Alt DP, Stedtfeld RD, Sul WJ, Stedtfeld TM, Chai B, Cole JR, Hashsham SA, Tiedje JM, Stanton TB.

Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):1691-6. doi: 10.1073/pnas.1120238109. Epub 2012 Jan 17.


Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering.

Sul WJ, Cole JR, Jesus Eda C, Wang Q, Farris RJ, Fish JA, Tiedje JM.

Proc Natl Acad Sci U S A. 2011 Aug 30;108(35):14637-42. doi: 10.1073/pnas.1111435108. Epub 2011 Aug 22.


Novel biphenyl-oxidizing bacteria and dioxygenase genes from a korean tidal mudflat.

Lee TK, Lee J, Sul WJ, Iwai S, Chai B, Tiedje JM, Park J.

Appl Environ Microbiol. 2011 Jun;77(11):3888-91. doi: 10.1128/AEM.00023-11. Epub 2011 Apr 15.


Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica.

Teixeira LC, Peixoto RS, Cury JC, Sul WJ, Pellizari VH, Tiedje J, Rosado AS.

ISME J. 2010 Aug;4(8):989-1001. doi: 10.1038/ismej.2010.35. Epub 2010 Apr 1.


Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment.

Iwai S, Chai B, Sul WJ, Cole JR, Hashsham SA, Tiedje JM.

ISME J. 2010 Feb;4(2):279-85. doi: 10.1038/ismej.2009.104. Epub 2009 Sep 24.


DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment.

Sul WJ, Park J, Quensen JF 3rd, Rodrigues JL, Seliger L, Tsoi TV, Zylstra GJ, Tiedje JM.

Appl Environ Microbiol. 2009 Sep;75(17):5501-6. doi: 10.1128/AEM.00121-09. Epub 2009 Jul 31.


Assessment of bias associated with incomplete extraction of microbial DNA from soil.

Feinstein LM, Sul WJ, Blackwood CB.

Appl Environ Microbiol. 2009 Aug;75(16):5428-33. doi: 10.1128/AEM.00120-09. Epub 2009 Jun 26.


Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility.

Chain PS, Denef VJ, Konstantinidis KT, Vergez LM, Agulló L, Reyes VL, Hauser L, Córdova M, Gómez L, González M, Land M, Lao V, Larimer F, LiPuma JJ, Mahenthiralingam E, Malfatti SA, Marx CJ, Parnell JJ, Ramette A, Richardson P, Seeger M, Smith D, Spilker T, Sul WJ, Tsoi TV, Ulrich LE, Zhulin IB, Tiedje JM.

Proc Natl Acad Sci U S A. 2006 Oct 17;103(42):15280-7. Epub 2006 Oct 9.


Molecular and biochemical analysis of phthalate and terephthalate degradation by Rhodococcus sp. strain DK17.

Choi KY, Kim D, Sul WJ, Chae JC, Zylstra GJ, Kim YM, Kim E.

FEMS Microbiol Lett. 2005 Nov 15;252(2):207-13. Epub 2005 Sep 12.


Implication of two glutathione S-transferases in the optimal metabolism of m-toluate by Sphingomonas yanoikuyae B1.

Bae M, Sul WJ, Koh SC, Lee JH, Zylstra GJ, Kim YM, Kimr E.

Antonie Van Leeuwenhoek. 2003;84(1):25-30.


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