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Items: 1 to 50 of 120

1.

A Suppressor/Avirulence Gene Combination in Hyaloperonospora arabidopsidis Determines Race Specificity in Arabidopsis thaliana.

Woods-Tör A, Studholme DJ, Cevik V, Telli O, Holub EB, Tör M.

Front Plant Sci. 2018 Mar 1;9:265. doi: 10.3389/fpls.2018.00265. eCollection 2018.

2.

Ash leaf metabolomes reveal differences between trees tolerant and susceptible to ash dieback disease.

Sambles CM, Salmon DL, Florance H, Howard TP, Smirnoff N, Nielsen LR, McKinney LV, Kjær ED, Buggs RJA, Studholme DJ, Grant M.

Sci Data. 2017 Dec 19;4:170190. doi: 10.1038/sdata.2017.190.

3.

Morphological Variation and Inter-Relationships of Quantitative Traits in Enset (Ensete ventricosum (welw.) Cheesman) Germplasm from South and South-Western Ethiopia.

Yemataw Z, Chala A, Ambachew D, Studholme DJ, Grant MR, Tesfaye K.

Plants (Basel). 2017 Dec 6;6(4). pii: E56. doi: 10.3390/plants6040056.

4.

Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida.

Vicente JG, Rothwell S, Holub EB, Studholme DJ.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3645-3654. doi: 10.1099/ijsem.0.002189. Epub 2017 Aug 25.

PMID:
28840805
5.

Tpc1 is an important Zn(II)2Cys6 transcriptional regulator required for polarized growth and virulence in the rice blast fungus.

Galhano R, Illana A, Ryder LS, Rodríguez-Romero J, Demuez M, Badaruddin M, Martinez-Rocha AL, Soanes DM, Studholme DJ, Talbot NJ, Sesma A.

PLoS Pathog. 2017 Jul 24;13(7):e1006516. doi: 10.1371/journal.ppat.1006516. eCollection 2017 Jul.

6.

Metagenomic analysis of the complex microbial consortium associated with cultures of the oil-rich alga Botryococcus braunii.

Sambles C, Moore K, Lux TM, Jones K, Littlejohn GR, Gouveia JD, Aves SJ, Studholme DJ, Lee R, Love J.

Microbiologyopen. 2017 Aug;6(4). doi: 10.1002/mbo3.482. Epub 2017 Jun 28.

7.

Population-genomic insights into emergence, crop adaptation and dissemination of Pseudomonas syringae pathogens.

Monteil CL, Yahara K, Studholme DJ, Mageiros L, Méric G, Swingle B, Morris CE, Vinatzer BA, Sheppard SK.

Microb Genom. 2016 Oct 21;2(10):e000089. doi: 10.1099/mgen.0.000089. eCollection 2016 Oct.

8.

Genome sequences of 12 isolates of the EU1 lineage of Phytophthora ramorum, a fungus-like pathogen that causes extensive damage and mortality to a wide range of trees and other plants.

Turner J, O'Neill P, Grant M, Mumford RA, Thwaites R, Studholme DJ.

Genom Data. 2017 Feb 6;12:17-21. doi: 10.1016/j.gdata.2017.02.006. eCollection 2017 Jun.

9.

Genome sequence and genetic diversity of European ash trees.

Sollars ES, Harper AL, Kelly LJ, Sambles CM, Ramirez-Gonzalez RH, Swarbreck D, Kaithakottil G, Cooper ED, Uauy C, Havlickova L, Worswick G, Studholme DJ, Zohren J, Salmon DL, Clavijo BJ, Li Y, He Z, Fellgett A, McKinney LV, Nielsen LR, Douglas GC, Kjær ED, Downie JA, Boshier D, Lee S, Clark J, Grant M, Bancroft I, Caccamo M, Buggs RJ.

Nature. 2017 Jan 12;541(7636):212-216. doi: 10.1038/nature20786. Epub 2016 Dec 26.

PMID:
28024298
10.

Comparative genomics of an endophytic Pseudomonas putida isolated from mango orchard.

Asif H, Studholme DJ, Khan A, Aurongzeb M, Khan IA, Azim MK.

Genet Mol Biol. 2016 Jul-Sep;39(3):465-73. doi: 10.1590/1678-4685-GMB-2015-0186. Epub 2016 Jul 7.

11.

Transcriptional reprogramming underpins enhanced plant growth promotion by the biocontrol fungus Trichoderma hamatum GD12 during antagonistic interactions with Sclerotinia sclerotiorum in soil.

Shaw S, Le Cocq K, Paszkiewicz K, Moore K, Winsbury R, de Torres Zabala M, Studholme DJ, Salmon D, Thornton CR, Grant MR.

Mol Plant Pathol. 2016 Dec;17(9):1425-1441. doi: 10.1111/mpp.12429. Epub 2016 Jul 24.

PMID:
27187266
12.

Genome Update. Let the consumer beware: Streptomyces genome sequence quality.

Studholme DJ.

Microb Biotechnol. 2016 Jan;9(1):3-7. doi: 10.1111/1751-7915.12344.

13.

Genome sequences of six Phytophthora species associated with forests in New Zealand.

Studholme DJ, McDougal RL, Sambles C, Hansen E, Hardy G, Grant M, Ganley RJ, Williams NM.

Genom Data. 2015 Nov 22;7:54-6. doi: 10.1016/j.gdata.2015.11.015. eCollection 2016 Mar.

14.

Draft Genome Sequence of Pseudomonas syringae pv. syringae ALF3 Isolated from Alfalfa.

Harrison J, Dornbusch MR, Samac D, Studholme DJ.

Genome Announc. 2016 Feb 11;4(1). pii: e01722-15. doi: 10.1128/genomeA.01722-15.

15.

Draft Genome Sequences of Two Strains of Xanthomonas arboricola pv. celebensis Isolated from Banana Plants.

Harrison J, Grant MR, Studholme DJ.

Genome Announc. 2016 Feb 11;4(1). pii: e01705-15. doi: 10.1128/genomeA.01705-15.

17.

Assessing the performance of the Oxford Nanopore Technologies MinION.

Laver T, Harrison J, O'Neill PA, Moore K, Farbos A, Paszkiewicz K, Studholme DJ.

Biomol Detect Quantif. 2015 Mar;3:1-8.

18.

Draft genome sequences of Phytophthora kernoviae and Phytophthora ramorum lineage EU2 from Scotland.

Sambles C, Schlenzig A, O'Neill P, Grant M, Studholme DJ.

Genom Data. 2015 Sep 22;6:193-4. doi: 10.1016/j.gdata.2015.09.010. eCollection 2015 Dec.

19.

Draft genome sequences of seven isolates of Phytophthora ramorum EU2 from Northern Ireland.

Mata Saez Lde L, McCracken AR, Cooke LR, O'Neill P, Grant M, Studholme DJ.

Genom Data. 2015 Sep 22;6:191-2. doi: 10.1016/j.gdata.2015.09.009. eCollection 2015 Dec.

20.

New and Improved Techniques for the Study of Pathogenic Fungi.

Cairns TC, Studholme DJ, Talbot NJ, Haynes K.

Trends Microbiol. 2016 Jan;24(1):35-50. doi: 10.1016/j.tim.2015.09.008. Epub 2015 Nov 5. Review.

PMID:
26549580
21.

Genome sequencing reveals a new lineage associated with lablab bean and genetic exchange between Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans.

Aritua V, Harrison J, Sapp M, Buruchara R, Smith J, Studholme DJ.

Front Microbiol. 2015 Oct 7;6:1080. doi: 10.3389/fmicb.2015.01080. eCollection 2015.

22.

Draft Genome Sequence of the Enteropathogenic Bacterium Campylobacter jejuni Strain cj255.

Siddiqui FM, Ibrahim M, Noureen N, Noreen Z, Titball RW, Champion OL, Wren BW, Studholme D, Bokhari H.

Genome Announc. 2015 Oct 22;3(5). pii: e01223-15. doi: 10.1128/genomeA.01223-15.

23.

Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora.

Sharma R, Xia X, Cano LM, Evangelisti E, Kemen E, Judelson H, Oome S, Sambles C, van den Hoogen DJ, Kitner M, Klein J, Meijer HJ, Spring O, Win J, Zipper R, Bode HB, Govers F, Kamoun S, Schornack S, Studholme DJ, Van den Ackerveken G, Thines M.

BMC Genomics. 2015 Oct 5;16:741. doi: 10.1186/s12864-015-1904-7.

24.

Rapid, specific, simple, in-field detection of Xanthomonas campestris pathovar musacearum by loop-mediated isothermal amplification.

Hodgetts J, Hall J, Karamura G, Grant M, Studholme DJ, Boonham N, Karamura E, Smith JJ.

J Appl Microbiol. 2015 Dec;119(6):1651-8. doi: 10.1111/jam.12959.

PMID:
26425811
25.

A codon-optimized green fluorescent protein for live cell imaging in Zymoseptoria tritici.

Kilaru S, Schuster M, Studholme D, Soanes D, Lin C, Talbot NJ, Steinberg G.

Fungal Genet Biol. 2015 Jun;79:125-31. doi: 10.1016/j.fgb.2015.03.022.

26.

Construction and high-throughput phenotypic screening ofZymoseptoria tritici over-expression strains.

Cairns TC, Sidhu YS, Chaudhari YK, Talbot NJ, Studholme DJ, Haynes K.

Fungal Genet Biol. 2015 Jun;79:110-7. doi: 10.1016/j.fgb.2015.04.013.

27.

Exploitation of sulfonylurea resistance marker and non-homologous end joining mutants for functional analysis in Zymoseptoria tritici.

Sidhu YS, Cairns TC, Chaudhari YK, Usher J, Talbot NJ, Studholme DJ, Csukai M, Haynes K.

Fungal Genet Biol. 2015 Jun;79:102-9. doi: 10.1016/j.fgb.2015.04.015.

28.

Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles.

Nandi T, Holden MT, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, Wang S, How LC, Sim B, Essex-Lopresti A, Sarkar-Tyson M, Nelson M, Smither S, Ong C, Aw LT, Hoon CH, Michell S, Studholme DJ, Titball R, Chen SL, Parkhill J, Tan P.

Genome Res. 2015 Apr;25(4):608. No abstract available.

29.

Development of molecular markers tightly linked to Pvr4 gene in pepper using next-generation sequencing.

Devran Z, Kahveci E, Özkaynak E, Studholme DJ, Tör M.

Mol Breed. 2015;35(4):101. Epub 2015 Mar 17.

30.

Evolution. Evolutionary resurrection of flagellar motility via rewiring of the nitrogen regulation system.

Taylor TB, Mulley G, Dills AH, Alsohim AS, McGuffin LJ, Studholme DJ, Silby MW, Brockhurst MA, Johnson LJ, Jackson RW.

Science. 2015 Feb 27;347(6225):1014-7. doi: 10.1126/science.1259145.

31.

Genome-Enabled Phylogeographic Investigation of the Quarantine Pathogen Ralstonia solanacearum Race 3 Biovar 2 and Screening for Sources of Resistance Against Its Core Effectors.

Clarke CR, Studholme DJ, Hayes B, Runde B, Weisberg A, Cai R, Wroblewski T, Daunay MC, Wicker E, Castillo JA, Vinatzer BA.

Phytopathology. 2015 May;105(5):597-607. doi: 10.1094/PHYTO-12-14-0373-R.

32.

The draft genome sequence of Xanthomonas species strain Nyagatare, isolated from diseased bean in Rwanda.

Aritua V, Musoni A, Kabeja A, Butare L, Mukamuhirwa F, Gahakwa D, Kato F, Abang MM, Buruchara R, Sapp M, Harrison J, Studholme DJ, Smith J.

FEMS Microbiol Lett. 2015 Feb;362(4). doi: 10.1093/femsle/fnu055. Epub 2014 Dec 11.

33.

Molecular detection identified a type six secretion system in Campylobacter jejuni from various sources but not from human cases.

Siddiqui F, Champion O, Akram M, Studholme D, Eqani SA, Wren BW, Titball R, Bokhari H.

J Appl Microbiol. 2015 May;118(5):1191-8. doi: 10.1111/jam.12748. Epub 2015 Mar 12.

PMID:
25580664
34.

Chloroplasts play a central role in plant defence and are targeted by pathogen effectors.

de Torres Zabala M, Littlejohn G, Jayaraman S, Studholme D, Bailey T, Lawson T, Tillich M, Licht D, Bölter B, Delfino L, Truman W, Mansfield J, Smirnoff N, Grant M.

Nat Plants. 2015 Jun 1;1:15074. doi: 10.1038/nplants.2015.74.

PMID:
27250009
35.

Genome Sequencing of Xanthomonas vasicola Pathovar vasculorum Reveals Variation in Plasmids and Genes Encoding Lipopolysaccharide Synthesis, Type-IV Pilus and Type-III Secretion Effectors.

Wasukira A, Coulter M, Al-Sowayeh N, Thwaites R, Paszkiewicz K, Kubiriba J, Smith J, Grant M, Studholme DJ.

Pathogens. 2014 Mar 18;3(1):211-37. doi: 10.3390/pathogens3010211.

36.

Assessing the accuracy of quantitative molecular microbial profiling.

O'Sullivan DM, Laver T, Temisak S, Redshaw N, Harris KA, Foy CA, Studholme DJ, Huggett JF.

Int J Mol Sci. 2014 Nov 21;15(11):21476-91. doi: 10.3390/ijms151121476.

37.

Differences in carbon source utilisation distinguish Campylobacter jejuni from Campylobacter coli.

Wagley S, Newcombe J, Laing E, Yusuf E, Sambles CM, Studholme DJ, La Ragione RM, Titball RW, Champion OL.

BMC Microbiol. 2014 Oct 28;14:262. doi: 10.1186/s12866-014-0262-y.

38.

Draft genome sequence of Xanthomonas axonopodis pathovar vasculorum NCPPB 900.

Harrison J, Studholme DJ.

FEMS Microbiol Lett. 2014 Nov;360(2):113-6.

39.

Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles.

Nandi T, Holden MT, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, Wang S, How LC, Sim B, Essex-Lopresti A, Sarkar-Tyson M, Nelson M, Smither S, Ong C, Aw LT, Hoon CH, Michell S, Studholme DJ, Titball R, Chen SL, Parkhill J, Tan P.

Genome Res. 2015 Jan;25(1):129-41. doi: 10.1101/gr.177543.114. Epub 2014 Sep 18. Erratum in: Genome Res. 2015 Apr;25(4):608. Holden, Mathew T G [corrected to Holden, Matthew T G].

40.

Some (bacilli) like it hot: genomics of Geobacillus species.

Studholme DJ.

Microb Biotechnol. 2015 Jan;8(1):40-8. doi: 10.1111/1751-7915.12161. Epub 2014 Sep 5. No abstract available.

41.

Recently published Streptomyces genome sequences.

Harrison J, Studholme DJ.

Microb Biotechnol. 2014 Sep;7(5):373-80. doi: 10.1111/1751-7915.12143. No abstract available.

42.

Draft Genome Sequence of Beneficial Rice Rhizosphere Isolate Pseudomonas aeruginosa PUPa3.

Uzelac G, Bertani I, Kojic M, Paszkiewicz KH, Studholme DJ, Passos da Silva D, Venturi V.

Genome Announc. 2014 Jul 3;2(4). pii: e00654-14. doi: 10.1128/genomeA.00654-14.

43.

Identification of possible virulence marker from Campylobacter jejuni isolates.

Harrison JW, Dung TT, Siddiqui F, Korbrisate S, Bukhari H, Tra MP, Hoang NV, Carrique-Mas J, Bryant J, Campbell JI, Studholme DJ, Wren BW, Baker S, Titball RW, Champion OL.

Emerg Infect Dis. 2014 Jun;20(6):1026-9. doi: 10.3201/eid2006.130635.

44.

The rulB gene of plasmid pWW0 is a hotspot for the site-specific insertion of integron-like elements found in the chromosomes of environmental Pseudomonas fluorescens group bacteria.

Rhodes G, Bosma H, Studholme D, Arnold DL, Jackson RW, Pickup RW.

Environ Microbiol. 2014 Aug;16(8):2374-88. doi: 10.1111/1462-2920.12345. Epub 2014 Jan 7.

45.

Salmonella Gallinarum field isolates from laying hens are related to the vaccine strain SG9R.

Van Immerseel F, Studholme DJ, Eeckhaut V, Heyndrickx M, Dewulf J, Dewaele I, Van Hoorebeke S, Haesebrouck F, Van Meirhaeghe H, Ducatelle R, Paszkiewicz K, Titball RW.

Vaccine. 2013 Oct 9;31(43):4940-5. doi: 10.1016/j.vaccine.2013.08.033. Epub 2013 Aug 27.

PMID:
23994381
46.

Investigating the beneficial traits of Trichoderma hamatum GD12 for sustainable agriculture-insights from genomics.

Studholme DJ, Harris B, Le Cocq K, Winsbury R, Perera V, Ryder L, Ward JL, Beale MH, Thornton CR, Grant M.

Front Plant Sci. 2013 Jul 30;4:258. doi: 10.3389/fpls.2013.00258. eCollection 2013.

47.

Nonagricultural reservoirs contribute to emergence and evolution of Pseudomonas syringae crop pathogens.

Monteil CL, Cai R, Liu H, Llontop ME, Leman S, Studholme DJ, Morris CE, Vinatzer BA.

New Phytol. 2013 Aug;199(3):800-11. doi: 10.1111/nph.12316. Epub 2013 May 21.

48.

Genome-wide sequencing of Phytophthora lateralis reveals genetic variation among isolates from Lawson cypress (Chamaecyparis lawsoniana) in Northern Ireland.

Quinn L, O'Neill PA, Harrison J, Paskiewicz KH, McCracken AR, Cooke LR, Grant MR, Studholme DJ.

FEMS Microbiol Lett. 2013 Jul;344(2):179-85. doi: 10.1111/1574-6968.12179. Epub 2013 Jun 5.

49.

Draft Genome Sequence of Erwinia toletana, a Bacterium Associated with Olive Knots Caused by Pseudomonas savastanoi pv. Savastanoi.

Passos da Silva D, Devescovi G, Paszkiewicz K, Moretti C, Buonaurio R, Studholme DJ, Venturi V.

Genome Announc. 2013 May 9;1(3). pii: e00205-13. doi: 10.1128/genomeA.00205-13.

50.

Genome characterization of a novel Burkholderia cepacia complex genomovar isolated from dieback affected mango orchards.

Khan A, Asif H, Studholme DJ, Khan IA, Azim MK.

World J Microbiol Biotechnol. 2013 Nov;29(11):2033-44. doi: 10.1007/s11274-013-1366-5. Epub 2013 May 8.

PMID:
23653265

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