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Items: 44

1.

At the Nexus of History, Ecology, and Hydrobiogeochemistry: Improved Predictions across Scales through Integration.

Stegen JC.

mSystems. 2018 Apr 10;3(2). pii: e00167-17. doi: 10.1128/mSystems.00167-17. eCollection 2018 Mar-Apr.

2.

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria.

Tripathi BM, Stegen JC, Kim M, Dong K, Adams JM, Lee YK.

ISME J. 2018 Apr;12(4):1072-1083. doi: 10.1038/s41396-018-0082-4. Epub 2018 Mar 7.

PMID:
29515169
3.

Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J.

Nat Commun. 2018 Mar 7;9(1):1034. doi: 10.1038/s41467-018-03572-7.

4.

Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J.

Nat Commun. 2018 Feb 8;9(1):585. doi: 10.1038/s41467-018-02922-9. Erratum in: Nat Commun. 2018 Mar 7;9(1):1034.

5.

Long-term nitrogen addition affects the phylogenetic turnover of soil microbial community responding to moisture pulse.

Liu C, Yao M, Stegen JC, Rui J, Li J, Li X.

Sci Rep. 2017 Dec 13;7(1):17492. doi: 10.1038/s41598-017-17736-w.

6.

Regulation-Structured Dynamic Metabolic Model Provides a Potential Mechanism for Delayed Enzyme Response in Denitrification Process.

Song HS, Thomas DG, Stegen JC, Li M, Liu C, Song X, Chen X, Fredrickson JK, Zachara JM, Scheibe TD.

Front Microbiol. 2017 Sep 29;8:1866. doi: 10.3389/fmicb.2017.01866. eCollection 2017.

7.

Geochemical and Microbial Community Attributes in Relation to Hyporheic Zone Geological Facies.

Hou Z, Nelson WC, Stegen JC, Murray CJ, Arntzen E, Crump AR, Kennedy DW, Perkins MC, Scheibe TD, Fredrickson JK, Zachara JM.

Sci Rep. 2017 Sep 20;7(1):12006. doi: 10.1038/s41598-017-12275-w.

8.

Colonization Habitat Controls Biomass, Composition, and Metabolic Activity of Attached Microbial Communities in the Columbia River Hyporheic Corridor.

Stern N, Ginder-Vogel M, Stegen JC, Arntzen E, Kennedy DW, Larget BR, Roden EE.

Appl Environ Microbiol. 2017 Aug 1;83(16). pii: e00260-17. doi: 10.1128/AEM.00260-17. Print 2017 Aug 15.

9.

Nearly a decade-long repeatable seasonal diversity patterns of bacterioplankton communities in the eutrophic Lake Donghu (Wuhan, China).

Yan Q, Stegen JC, Yu Y, Deng Y, Li X, Wu S, Dai L, Zhang X, Li J, Wang C, Ni J, Li X, Hu H, Xiao F, Feng W, Ning D, He Z, Van Nostrand JD, Wu L, Zhou J.

Mol Ecol. 2017 Jul;26(14):3839-3850. doi: 10.1111/mec.14151. Epub 2017 May 21.

PMID:
28437572
10.

Autogenic succession and deterministic recovery following disturbance in soil bacterial communities.

Jurburg SD, Nunes I, Stegen JC, Le Roux X, Priemé A, Sørensen SJ, Salles JF.

Sci Rep. 2017 Apr 6;7:45691. doi: 10.1038/srep45691.

11.

Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes.

Graham EB, Crump AR, Resch CT, Fansler S, Arntzen E, Kennedy DW, Fredrickson JK, Stegen JC.

Environ Microbiol. 2017 Apr;19(4):1552-1567. doi: 10.1111/1462-2920.13720. Epub 2017 Mar 28.

PMID:
28276134
12.

Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism.

Graham EB, Crump AR, Resch CT, Fansler S, Arntzen E, Kennedy DW, Fredrickson JK, Stegen JC.

Front Microbiol. 2016 Dec 16;7:1949. doi: 10.3389/fmicb.2016.01949. eCollection 2016.

13.

Aligning the Measurement of Microbial Diversity with Macroecological Theory.

Stegen JC, Hurlbert AH, Bond-Lamberty B, Chen X, Anderson CG, Chu RK, Dini-Andreote F, Fansler SJ, Hess NJ, Tfaily M.

Front Microbiol. 2016 Sep 23;7:1487. eCollection 2016.

14.

Psychotropic Drug Prescription and the Risk of Falls in Nursing Home Residents.

Cox CA, van Jaarsveld HJ, Houterman S, van der Stegen JC, Wasylewicz AT, Grouls RJ, van der Linden CM.

J Am Med Dir Assoc. 2016 Dec 1;17(12):1089-1093. doi: 10.1016/j.jamda.2016.07.004. Epub 2016 Sep 16.

PMID:
27650670
15.

Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem.

Veach AM, Stegen JC, Brown SP, Dodds WK, Jumpponen A.

Mol Ecol. 2016 Sep;25(18):4674-88. doi: 10.1111/mec.13784. Epub 2016 Sep 6.

PMID:
27481285
16.

Coupling among Microbial Communities, Biogeochemistry, and Mineralogy across Biogeochemical Facies.

Stegen JC, Konopka A, McKinley JP, Murray C, Lin X, Miller MD, Kennedy DW, Miller EA, Resch CT, Fredrickson JK.

Sci Rep. 2016 Jul 29;6:30553. doi: 10.1038/srep30553.

17.

Groundwater-surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover.

Stegen JC, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Danczak RE, Fansler SJ, Kennedy DW, Resch CT, Tfaily M.

Nat Commun. 2016 Apr 7;7:11237. doi: 10.1038/ncomms11237.

18.

Relative Roles of Deterministic and Stochastic Processes in Driving the Vertical Distribution of Bacterial Communities in a Permafrost Core from the Qinghai-Tibet Plateau, China.

Hu W, Zhang Q, Tian T, Li D, Cheng G, Mu J, Wu Q, Niu F, Stegen JC, An L, Feng H.

PLoS One. 2015 Dec 23;10(12):e0145747. doi: 10.1371/journal.pone.0145747. eCollection 2015.

19.

The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle.

Nelson WC, Stegen JC.

Front Microbiol. 2015 Jul 21;6:713. doi: 10.3389/fmicb.2015.00713. eCollection 2015.

20.

Estimating and mapping ecological processes influencing microbial community assembly.

Stegen JC, Lin X, Fredrickson JK, Konopka AE.

Front Microbiol. 2015 May 1;6:370. doi: 10.3389/fmicb.2015.00370. eCollection 2015.

21.

The gut microbiota of rural papua new guineans: composition, diversity patterns, and ecological processes.

Martínez I, Stegen JC, Maldonado-Gómez MX, Eren AM, Siba PM, Greenhill AR, Walter J.

Cell Rep. 2015 Apr 28;11(4):527-38. doi: 10.1016/j.celrep.2015.03.049. Epub 2015 Apr 16.

22.

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession.

Dini-Andreote F, Stegen JC, van Elsas JD, Salles JF.

Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):E1326-32. doi: 10.1073/pnas.1414261112. Epub 2015 Mar 2.

23.

On the processes generating latitudinal richness gradients: identifying diagnostic patterns and predictions.

Hurlbert AH, Stegen JC.

Front Genet. 2014 Dec 2;5:420. doi: 10.3389/fgene.2014.00420. eCollection 2014.

24.

When should species richness be energy limited, and how would we know?

Hurlbert AH, Stegen JC.

Ecol Lett. 2014 Apr;17(4):401-13. doi: 10.1111/ele.12240. Epub 2014 Jan 7.

PMID:
24393362
25.

The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling.

Lindemann SR, Moran JJ, Stegen JC, Renslow RS, Hutchison JR, Cole JK, Dohnalkova AC, Tremblay J, Singh K, Malfatti SA, Chen F, Tringe SG, Beyenal H, Fredrickson JK.

Front Microbiol. 2013 Nov 13;4:323. doi: 10.3389/fmicb.2013.00323. eCollection 2013.

26.

An empirical assessment of tree branching networks and implications for plant allometric scaling models.

Bentley LP, Stegen JC, Savage VM, Smith DD, von Allmen EI, Sperry JS, Reich PB, Enquist BJ.

Ecol Lett. 2013 Aug;16(8):1069-78. doi: 10.1111/ele.12127. Epub 2013 Jun 26.

PMID:
23800188
27.

Quantifying community assembly processes and identifying features that impose them.

Stegen JC, Lin X, Fredrickson JK, Chen X, Kennedy DW, Murray CJ, Rockhold ML, Konopka A.

ISME J. 2013 Nov;7(11):2069-79. doi: 10.1038/ismej.2013.93. Epub 2013 Jun 6.

28.

Time use of stroke patients with stroke admitted for rehabilitation in Skilled Nursing Facilities.

Vermeulen CJ, Buijck BI, van der Stegen JC, van Eijk MS, Koopmans RT, Hafsteinsdóttir TB.

Rehabil Nurs. 2013 Nov-Dec;38(6):297-305. doi: 10.1002/rnj.79. Epub 2013 May 29.

PMID:
23720409
29.

Linking microbial community structure to β-glucosidic function in soil aggregates.

Bailey VL, Fansler SJ, Stegen JC, McCue LA.

ISME J. 2013 Oct;7(10):2044-53. doi: 10.1038/ismej.2013.87. Epub 2013 May 30.

30.

Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes.

Wang J, Shen J, Wu Y, Tu C, Soininen J, Stegen JC, He J, Liu X, Zhang L, Zhang E.

ISME J. 2013 Jul;7(7):1310-21. doi: 10.1038/ismej.2013.30. Epub 2013 Feb 28.

31.

Correlations between physical and chemical defences in plants: tradeoffs, syndromes, or just many different ways to skin a herbivorous cat?

Moles AT, Peco B, Wallis IR, Foley WJ, Poore AG, Seabloom EW, Vesk PA, Bisigato AJ, Cella-Pizarro L, Clark CJ, Cohen PS, Cornwell WK, Edwards W, Ejrnaes R, Gonzales-Ojeda T, Graae BJ, Hay G, Lumbwe FC, Magaña-Rodríguez B, Moore BD, Peri PL, Poulsen JR, Stegen JC, Veldtman R, von Zeipel H, Andrew NR, Boulter SL, Borer ET, Cornelissen JH, Farji-Brener AG, DeGabriel JL, Jurado E, Kyhn LA, Low B, Mulder CP, Reardon-Smith K, Rodríguez-Velázquez J, De Fortier A, Zheng Z, Blendinger PG, Enquist BJ, Facelli JM, Knight T, Majer JD, Martínez-Ramos M, McQuillan P, Hui FK.

New Phytol. 2013 Apr;198(1):252-63. doi: 10.1111/nph.12116. Epub 2013 Jan 14.

32.

Eco-evolutionary community dynamics: covariation between diversity and invasibility across temperature gradients.

Stegen JC, Enquist BJ, Ferrière R.

Am Nat. 2012 Oct;180(4):E110-26. doi: 10.1086/667577. Epub 2012 Aug 24.

PMID:
22976016
33.

Temporal turnover in the composition of tropical tree communities: functional determinism and phylogenetic stochasticity.

Swenson NG, Stegen JC, Davies SJ, Erickson DL, Forero-Montaña J, Hurlbert AH, Kress WJ, Thompson J, Uriarte M, Wright SJ, Zimmerman JK.

Ecology. 2012 Mar;93(3):490-9.

PMID:
22624204
34.

Interannual variability of growth and reproduction in Bursera simaruba: the role of allometry and resource variability.

Hulshof CM, Stegen JC, Swenson NG, Enquist CA, Enquist BJ.

Ecology. 2012 Jan;93(1):180-90.

PMID:
22486098
35.

Stochastic and deterministic assembly processes in subsurface microbial communities.

Stegen JC, Lin X, Konopka AE, Fredrickson JK.

ISME J. 2012 Sep;6(9):1653-64. doi: 10.1038/ismej.2012.22. Epub 2012 Mar 29.

36.

Dispersal, environmental niches and oceanic-scale turnover in deep-sea bivalves.

McClain CR, Stegen JC, Hurlbert AH.

Proc Biol Sci. 2012 May 22;279(1735):1993-2002. doi: 10.1098/rspb.2011.2166. Epub 2011 Dec 21.

37.

Disentangling the drivers of β diversity along latitudinal and elevational gradients.

Kraft NJ, Comita LS, Chase JM, Sanders NJ, Swenson NG, Crist TO, Stegen JC, Vellend M, Boyle B, Anderson MJ, Cornell HV, Davies KF, Freestone AL, Inouye BD, Harrison SP, Myers JA.

Science. 2011 Sep 23;333(6050):1755-8. doi: 10.1126/science.1208584. Erratum in: Science. 2012 Aug 3;337(6094):524. Science. 2011 Dec 9;334(6061):1348.

38.

Evolving ecological networks and the emergence of biodiversity patterns across temperature gradients.

Stegen JC, Ferriere R, Enquist BJ.

Proc Biol Sci. 2012 Mar 22;279(1731):1051-60. doi: 10.1098/rspb.2011.1733. Epub 2011 Sep 21.

39.

Inferring ecological processes from taxonomic, phylogenetic and functional trait β-diversity.

Stegen JC, Hurlbert AH.

PLoS One. 2011;6(6):e20906. doi: 10.1371/journal.pone.0020906. Epub 2011 Jun 17.

40.

Putting plant resistance traits on the map: a test of the idea that plants are better defended at lower latitudes.

Moles AT, Wallis IR, Foley WJ, Warton DI, Stegen JC, Bisigato AJ, Cella-Pizarro L, Clark CJ, Cohen PS, Cornwell WK, Edwards W, Ejrnaes R, Gonzales-Ojeda T, Graae BJ, Hay G, Lumbwe FC, Magaña-Rodríguez B, Moore BD, Peri PL, Poulsen JR, Veldtman R, von Zeipel H, Andrew NR, Boulter SL, Borer ET, Campón FF, Coll M, Farji-Brener AG, De Gabriel J, Jurado E, Kyhn LA, Low B, Mulder CP, Reardon-Smith K, Rodríguez-Velázquez J, Seabloom EW, Vesk PA, van Cauter A, Waldram MS, Zheng Z, Blendinger PG, Enquist BJ, Facelli JM, Knight T, Majer JD, Martínez-Ramos M, McQuillan P, Prior LD.

New Phytol. 2011 Aug;191(3):777-88. doi: 10.1111/j.1469-8137.2011.03732.x. Epub 2011 May 3.

41.

Navigating the multiple meanings of β diversity: a roadmap for the practicing ecologist.

Anderson MJ, Crist TO, Chase JM, Vellend M, Inouye BD, Freestone AL, Sanders NJ, Cornell HV, Comita LS, Davies KF, Harrison SP, Kraft NJ, Stegen JC, Swenson NG.

Ecol Lett. 2011 Jan;14(1):19-28. doi: 10.1111/j.1461-0248.2010.01552.x. Epub 2010 Nov 11. Erratum in: Ecol Lett. 2011 Feb;14(2):210.

PMID:
21070562
42.

Advancing the metabolic theory of biodiversity.

Stegen JC, Enquist BJ, Ferriere R.

Ecol Lett. 2009 Oct;12(10):1001-15. doi: 10.1111/j.1461-0248.2009.01358.x. Erratum in: Ecol Lett. 2010 Jan;13(1):141.

PMID:
19747180
43.

On the relationship between mass and diameter distributions in tree communities.

Stegen JC, White EP.

Ecol Lett. 2008 Dec;11(12):1287-93. doi: 10.1111/j.1461-0248.2008.01242.x. Epub 2008 Sep 8.

PMID:
18785987
44.

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