Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 224


Pseudo-parallel patterns of disjunctions in an Arctic-alpine plant lineage.

Stubbs RL, Folk RA, Xiang CL, Soltis DE, Cellinese N.

Mol Phylogenet Evol. 2018 Feb 26;123:88-100. doi: 10.1016/j.ympev.2018.02.016. [Epub ahead of print]


Evolutionary history of the angiosperm flora of China.

Lu LM, Mao LF, Yang T, Ye JF, Liu B, Li HL, Sun M, Miller JT, Mathews S, Hu HH, Niu YT, Peng DX, Chen YH, Smith SA, Chen M, Xiang KL, Le CT, Dang VC, Lu AM, Soltis PS, Soltis DE, Li JH, Chen ZD.

Nature. 2018 Feb 8;554(7691):234-238. doi: 10.1038/nature25485. Epub 2018 Jan 31.


Adding loci improves phylogeographic resolution in red mangroves despite increased missing data: comparing microsatellites and RAD-Seq and investigating loci filtering.

Hodel RGJ, Chen S, Payton AC, McDaniel SF, Soltis P, Soltis DE.

Sci Rep. 2017 Dec 14;7(1):17598. doi: 10.1038/s41598-017-16810-7.


Cytogeography of Callisia section Cuthbertia (Commelinaceae).

Molgo IE, Soltis DE, Soltis PS.

Comp Cytogenet. 2017 Sep 1;11(4):553-577. doi: 10.3897/CompCytogen.v11i4.11984. eCollection 2017.


Factors promoting polyploid persistence and diversification and limiting diploid speciation during the K-Pg interlude.

Levin DA, Soltis DE.

Curr Opin Plant Biol. 2017 Oct 27;42:1-7. doi: 10.1016/j.pbi.2017.09.010. [Epub ahead of print] Review.


Insights into the historical assembly of East Asian subtropical evergreen broadleaved forests revealed by the temporal history of the tea family.

Yu XQ, Gao LM, Soltis DE, Soltis PS, Yang JB, Fang L, Yang SX, Li DZ.

New Phytol. 2017 Aug;215(3):1235-1248. doi: 10.1111/nph.14683.


Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae).

Landis JB, Soltis DE, Soltis PS.

BMC Genomics. 2017 Jun 23;18(1):475. doi: 10.1186/s12864-017-3868-2.


Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes.

Johnson KL, Cassin AM, Lonsdale A, Wong GK, Soltis DE, Miles NW, Melkonian M, Melkonian B, Deyholos MK, Leebens-Mack J, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Carpenter EJ, Bacic A, Doblin MS, Schultz CJ.

Plant Physiol. 2017 Jun;174(2):904-921. doi: 10.1104/pp.17.00295. Epub 2017 Apr 26.


Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae).

García N, Folk RA, Meerow AW, Chamala S, Gitzendanner MA, Oliveira RS, Soltis DE, Soltis PS.

Mol Phylogenet Evol. 2017 Jun;111:231-247. doi: 10.1016/j.ympev.2017.04.003. Epub 2017 Apr 6.


Detecting alternatively spliced transcript isoforms from single-molecule long-read sequences without a reference genome.

Liu X, Mei W, Soltis PS, Soltis DE, Barbazuk WB.

Mol Ecol Resour. 2017 Nov;17(6):1243-1256. doi: 10.1111/1755-0998.12670. Epub 2017 Jun 5.


Evolutionary and domestication history of Cucurbita (pumpkin and squash) species inferred from 44 nuclear loci.

Kates HR, Soltis PS, Soltis DE.

Mol Phylogenet Evol. 2017 Jun;111:98-109. doi: 10.1016/j.ympev.2017.03.002. Epub 2017 Mar 10.


Evolutionary Conservation of ABA Signaling for Stomatal Closure.

Cai S, Chen G, Wang Y, Huang Y, Marchant DB, Wang Y, Yang Q, Dai F, Hills A, Franks PJ, Nevo E, Soltis DE, Soltis PS, Sessa E, Wolf PG, Xue D, Zhang G, Pogson BJ, Blatt MR, Chen ZH.

Plant Physiol. 2017 Jun;174(2):732-747. doi: 10.1104/pp.16.01848. Epub 2017 Feb 23.


Whole-genome duplication and molecular evolution in Cornus L. (Cornaceae) - Insights from transcriptome sequences.

Yu Y, Xiang Q, Manos PS, Soltis DE, Soltis PS, Song BH, Cheng S, Liu X, Wong G.

PLoS One. 2017 Feb 22;12(2):e0171361. doi: 10.1371/journal.pone.0171361. eCollection 2017.


Diversification of Rosaceae since the Late Cretaceous based on plastid phylogenomics.

Zhang SD, Jin JJ, Chen SY, Chase MW, Soltis DE, Li HT, Yang JB, Li DZ, Yi TS.

New Phytol. 2017 May;214(3):1355-1367. doi: 10.1111/nph.14461. Epub 2017 Feb 10.


Evolution of floral diversity: genomics, genes and gamma.

Chanderbali AS, Berger BA, Howarth DG, Soltis DE, Soltis PS.

Philos Trans R Soc Lond B Biol Sci. 2017 Feb 5;372(1713). pii: 20150509. Review.


The Evolution of HD2 Proteins in Green Plants.

Bourque S, Jeandroz S, Grandperret V, Lehotai N, Aimé S, Soltis DE, Miles NW, Melkonian M, Deyholos MK, Leebens-Mack JH, Chase MW, Rothfels CJ, Stevenson DW, Graham SW, Wang X, Wu S, Pires JC, Edger PP, Yan Z, Xie Y, Carpenter EJ, Wong GKS, Wendehenne D, Nicolas-Francès V.

Trends Plant Sci. 2016 Dec;21(12):1008-1016. doi: 10.1016/j.tplants.2016.10.001. Epub 2016 Oct 24. Review.


The influence of habitat on the evolution of plants: a case study across Saxifragales.

de Casas RR, Mort ME, Soltis DE.

Ann Bot. 2016 Dec;118(7):1317-1328. Epub 2016 Aug 22.


Idiosyncratic responses of evergreen broad-leaved forest constituents in China to the late Quaternary climate changes.

Fan D, Hu W, Li B, Morris AB, Zheng M, Soltis DE, Soltis PS, Zhang Z.

Sci Rep. 2016 Aug 18;6:31044. doi: 10.1038/srep31044.


Niche divergence between diploid and autotetraploid Tolmiea.

Visger CJ, Germain-Aubrey CC, Patel M, Sessa EB, Soltis PS, Soltis DE.

Am J Bot. 2016 Aug;103(8):1396-406. doi: 10.3732/ajb.1600130. Epub 2016 Aug 9.


Patterns of abiotic niche shifts in allopolyploids relative to their progenitors.

Blaine Marchant D, Soltis DE, Soltis PS.

New Phytol. 2016 Nov;212(3):708-718. doi: 10.1111/nph.14069. Epub 2016 Jul 11.


The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century.

Hodel RG, Segovia-Salcedo MC, Landis JB, Crowl AA, Sun M, Liu X, Gitzendanner MA, Douglas NA, Germain-Aubrey CC, Chen S, Soltis DE, Soltis PS.

Appl Plant Sci. 2016 Jun 16;4(6). pii: apps.1600025. doi: 10.3732/apps.1600025. eCollection 2016 Jun.


A new resource for the development of SSR markers: Millions of loci from a thousand plant transcriptomes.

Hodel RG, Gitzendanner MA, Germain-Aubrey CC, Liu X, Crowl AA, Sun M, Landis JB, Segovia-Salcedo MC, Douglas NA, Chen S, Soltis DE, Soltis PS.

Appl Plant Sci. 2016 Jun 16;4(6). pii: apps.1600024. doi: 10.3732/apps.1600024. eCollection 2016 Jun.


Floral flexibility: Diversification of the flower.

Soltis DE.

Nat Plants. 2016 Jan 6;2:15211. doi: 10.1038/nplants.2015.211. No abstract available.


Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology.

Lane TS, Rempe CS, Davitt J, Staton ME, Peng Y, Soltis DE, Melkonian M, Deyholos M, Leebens-Mack JH, Chase M, Rothfels CJ, Stevenson D, Graham SW, Yu J, Liu T, Pires JC, Edger PP, Zhang Y, Xie Y, Zhu Y, Carpenter E, Wong GK, Stewart CN Jr.

BMC Biotechnol. 2016 May 31;16(1):47. doi: 10.1186/s12896-016-0277-6.


Polyploidy: Pitfalls and paths to a paradigm.

Soltis DE, Visger CJ, Marchant DB, Soltis PS.

Am J Bot. 2016 Jul;103(7):1146-66. doi: 10.3732/ajb.1500501. Epub 2016 May 27.


Ancient WGD events as drivers of key innovations in angiosperms.

Soltis PS, Soltis DE.

Curr Opin Plant Biol. 2016 Apr;30:159-65. doi: 10.1016/j.pbi.2016.03.015. Epub 2016 Apr 8. Review.


Comparative phylogeography of black mangroves (Avicennia germinans) and red mangroves (Rhizophora mangle) in Florida: Testing the maritime discontinuity in coastal plants.

Hodel RG, Cortez MB, Soltis PS, Soltis DE.

Am J Bot. 2016 Apr;103(4):730-9. doi: 10.3732/ajb.1500260. Epub 2016 Apr 7.


Evolving Ideas on the Origin and Evolution of Flowers: New Perspectives in the Genomic Era.

Chanderbali AS, Berger BA, Howarth DG, Soltis PS, Soltis DE.

Genetics. 2016 Apr;202(4):1255-65. doi: 10.1534/genetics.115.182964. Review.


Polyploidy and the proteome.

Soltis DE, Misra BB, Shan S, Chen S, Soltis PS.

Biochim Biophys Acta. 2016 Aug;1864(8):896-907. doi: 10.1016/j.bbapap.2016.03.010. Epub 2016 Mar 16. Review.


Are microsatellite fragment lengths useful for population-level studies? The case of Polygala lewtonii (Polygalaceae).

Germain-Aubrey CC, Nelson C, Soltis DE, Soltis PS, Gitzendanner MA.

Appl Plant Sci. 2016 Feb 15;4(2). pii: apps.1500115. doi: 10.3732/apps.1500115. eCollection 2016 Feb.


The Phenotypic and Genetic Underpinnings of Flower Size in Polemoniaceae.

Landis JB, O'Toole RD, Ventura KL, Gitzendanner MA, Oppenheimer DG, Soltis DE, Soltis PS.

Front Plant Sci. 2016 Jan 5;6:1144. doi: 10.3389/fpls.2015.01144. eCollection 2015.


Phylogenomic and structural analyses of 18 complete plastomes across nearly all families of early-diverging eudicots, including an angiosperm-wide analysis of IR gene content evolution.

Sun Y, Moore MJ, Zhang S, Soltis PS, Soltis DE, Zhao T, Meng A, Li X, Li J, Wang H.

Mol Phylogenet Evol. 2016 Mar;96:93-101. doi: 10.1016/j.ympev.2015.12.006. Epub 2015 Dec 24.


Interpopulation hybridization generates meiotically stable rDNA epigenetic variants in allotetraploid Tragopogon mirus.

Matyášek R, Dobešová E, Húska D, Ježková I, Soltis PS, Soltis DE, Kovařík A.

Plant J. 2016 Feb;85(3):362-77. doi: 10.1111/tpj.13110.


Polyploidy and genome evolution in plants.

Soltis PS, Marchant DB, Van de Peer Y, Soltis DE.

Curr Opin Genet Dev. 2015 Dec;35:119-25. doi: 10.1016/j.gde.2015.11.003. Epub 2015 Dec 2. Review.


Cytonuclear Coordination Is Not Immediate upon Allopolyploid Formation in Tragopogon miscellus (Asteraceae) Allopolyploids.

Sehrish T, Symonds VV, Soltis DE, Soltis PS, Tate JA.

PLoS One. 2015 Dec 8;10(12):e0144339. doi: 10.1371/journal.pone.0144339. eCollection 2015.


Resolving basal lamiid phylogeny and the circumscription of Icacinaceae with a plastome-scale data set.

Stull GW, Duno de Stefano R, Soltis DE, Soltis PS.

Am J Bot. 2015 Nov;102(11):1794-813. doi: 10.3732/ajb.1500298. Epub 2015 Oct 27.


Peptidomics of Circular Cysteine-Rich Plant Peptides: Analysis of the Diversity of Cyclotides from Viola tricolor by Transcriptome and Proteome Mining.

Hellinger R, Koehbach J, Soltis DE, Carpenter EJ, Wong GK, Gruber CW.

J Proteome Res. 2015 Nov 6;14(11):4851-62. doi: 10.1021/acs.jproteome.5b00681. Epub 2015 Oct 8.


Synthesis of phylogeny and taxonomy into a comprehensive tree of life.

Hinchliff CE, Smith SA, Allman JF, Burleigh JG, Chaudhary R, Coghill LM, Crandall KA, Deng J, Drew BT, Gazis R, Gude K, Hibbett DS, Katz LA, Laughinghouse HD 4th, McTavish EJ, Midford PE, Owen CL, Ree RH, Rees JA, Soltis DE, Williams T, Cranston KA.

Proc Natl Acad Sci U S A. 2015 Oct 13;112(41):12764-9. doi: 10.1073/pnas.1423041112. Epub 2015 Sep 18.


Large-scale phylogenetic analyses reveal multiple gains of actinorhizal nitrogen-fixing symbioses in angiosperms associated with climate change.

Li HL, Wang W, Mortimer PE, Li RQ, Li DZ, Hyde KD, Xu JC, Soltis DE, Chen ZD.

Sci Rep. 2015 Sep 10;5:14023. doi: 10.1038/srep14023.


An Exploration into Fern Genome Space.

Wolf PG, Sessa EB, Marchant DB, Li FW, Rothfels CJ, Sigel EM, Gitzendanner MA, Visger CJ, Banks JA, Soltis DE, Soltis PS, Pryer KM, Der JP.

Genome Biol Evol. 2015 Aug 26;7(9):2533-44. doi: 10.1093/gbe/evv163.


The evolutionary history of ferns inferred from 25 low-copy nuclear genes.

Rothfels CJ, Li FW, Sigel EM, Huiet L, Larsson A, Burge DO, Ruhsam M, Deyholos M, Soltis DE, Stewart CN Jr, Shaw SW, Pokorny L, Chen T, dePamphilis C, DeGironimo L, Chen L, Wei X, Sun X, Korall P, Stevenson DW, Graham SW, Wong GK, Pryer KM.

Am J Bot. 2015 Jul;102(7):1089-107. doi: 10.3732/ajb.1500089. Epub 2015 Jul 16.


250 years of hybridization between two biennial herb species without speciation.

Matthews A, Emelianova K, Hatimy AA, Chester M, Pellicer J, Ahmad KS, Guignard MS, Rouhan G, Soltis DE, Soltis PS, Leitch IJ, Leitch AR, Mavrodiev EV, Buggs RJ.

AoB Plants. 2015 Jul 17;7. pii: plv081. doi: 10.1093/aobpla/plv081.


Population genetic variation, geographic structure, and multiple origins of autopolyploidy in Galax urceolata.

Servick S, Visger CJ, Gitzendanner MA, Soltis PS, Soltis DE.

Am J Bot. 2015 Jun;102(6):973-82. doi: 10.3732/ajb.1400554. Epub 2015 Jun 12.


Nested radiations and the pulse of angiosperm diversification: increased diversification rates often follow whole genome duplications.

Tank DC, Eastman JM, Pennell MW, Soltis PS, Soltis DE, Hinchliff CE, Brown JW, Sessa EB, Harmon LJ.

New Phytol. 2015 Jul;207(2):454-67. doi: 10.1111/nph.13491. Epub 2015 Jun 4.


Modified CTAB and TRIzol protocols improve RNA extraction from chemically complex Embryophyta.

Jordon-Thaden IE, Chanderbali AS, Gitzendanner MA, Soltis DE.

Appl Plant Sci. 2015 May 13;3(5). pii: apps.1400105. doi: 10.3732/apps.1400105. eCollection 2015 May.


Zanne et al. reply.

Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, Aarssen L, Bertin RI, Calaminus A, Govaerts R, Hemmings F, Leishman MR, Oleksyn J, Soltis PS, Swenson NG, Warman L, Beaulieu JM.

Nature. 2015 May 21;521(7552):E6-7. doi: 10.1038/nature14394. No abstract available.


Corrigendum: Three keys to the radiation of angiosperms into freezing environments.

Zanne AE, Tank DC, Cornwell WK, Eastman JM, Smith SA, FitzJohn RG, McGlinn DJ, O'Meara BC, Moles AT, Reich PB, Royer DL, Soltis DE, Stevens PF, Westoby M, Wright IJ, Aarssen L, Bertin RI, Calaminus A, Govaerts R, Hemmings F, Leishman MR, Oleksyn J, Soltis PS, Swenson NG, Warman L, Beaulieu JM.

Nature. 2015 May 21;521(7552):380. doi: 10.1038/nature14371. No abstract available.


MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes.

Chamala S, García N, Godden GT, Krishnakumar V, Jordon-Thaden IE, De Smet R, Barbazuk WB, Soltis DE, Soltis PS.

Appl Plant Sci. 2015 Apr 6;3(4). pii: apps.1400115. doi: 10.3732/apps.1400115. eCollection 2015 Apr.


Optical sectioning and 3D reconstructions as an alternative to scanning electron microscopy for analysis of cell shape.

Landis JB, Ventura KL, Soltis DE, Soltis PS, Oppenheimer DG.

Appl Plant Sci. 2015 Apr 3;3(4). pii: apps.1400112. doi: 10.3732/apps.1400112. eCollection 2015 Apr.


Out of the Water: Origin and Diversification of the LBD Gene Family.

Chanderbali AS, He F, Soltis PS, Soltis DE.

Mol Biol Evol. 2015 Aug;32(8):1996-2000. doi: 10.1093/molbev/msv080. Epub 2015 Apr 2.

Supplemental Content

Loading ...
Support Center