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Items: 38

1.

A Carbohydrate Moiety of Secreted Stage-Specific Glycoprotein 4 Participates in Host Cell Invasion by Trypanosoma cruzi Extracellular Amastigotes.

Florentino PTV, Real F, Orikaza CM, da Cunha JPC, Vitorino FNL, Cordero EM, Sobreira TJP, Mortara RA.

Front Microbiol. 2018 Apr 10;9:693. doi: 10.3389/fmicb.2018.00693. eCollection 2018.

PMID:
29692765
2.

High throughput reaction screening using desorption electrospray ionization mass spectrometry.

Wleklinski M, Loren BP, Ferreira CR, Jaman Z, Avramova L, Sobreira TJP, Thompson DH, Cooks RG.

Chem Sci. 2018 Jan 4;9(6):1647-1653. doi: 10.1039/c7sc04606e. eCollection 2018 Feb 14.

3.

Analysis of Human Nuclear Protein Complexes by Quantitative Mass Spectrometry Profiling.

Connelly KE, Hedrick V, Sobreira TJP, Dykhuizen EC, Aryal UK.

Proteomics. 2018 Apr 14:e1700427. doi: 10.1002/pmic.201700427. [Epub ahead of print]

PMID:
29655301
4.

Development and Characterization of an Endotoxemia Model in Zebra Fish.

Hsu AY, Gurol T, Sobreira TJP, Zhang S, Moore N, Cai C, Zhang ZY, Deng Q.

Front Immunol. 2018 Mar 29;9:607. doi: 10.3389/fimmu.2018.00607. eCollection 2018.

5.

Multiple reaction monitoring (MRM)-profiling for biomarker discovery applied to human polycystic ovarian syndrome.

Cordeiro FB, Ferreira CR, Sobreira TJP, Yannell KE, Jarmusch AK, Cedenho AP, Lo Turco EG, Cooks RG.

Rapid Commun Mass Spectrom. 2017 Sep 15;31(17):1462-1470. doi: 10.1002/rcm.7927.

PMID:
28656689
6.

Antibody Binding Alters the Characteristics and Contents of Extracellular Vesicles Released by Histoplasma capsulatum.

Matos Baltazar L, Nakayasu ES, Sobreira TJ, Choi H, Casadevall A, Nimrichter L, Nosanchuk JD.

mSphere. 2016 Mar 30;1(2). pii: e00085-15. doi: 10.1128/mSphere.00085-15. eCollection 2016 Mar-Apr.

7.

Unique behavior of Trypanosoma cruzi mevalonate kinase: A conserved glycosomal enzyme involved in host cell invasion and signaling.

Ferreira ÉR, Horjales E, Bonfim-Melo A, Cortez C, da Silva CV, De Groote M, Sobreira TJ, Cruz MC, Lima FM, Cordero EM, Yoshida N, da Silveira JF, Mortara RA, Bahia D.

Sci Rep. 2016 Apr 26;6:24610. doi: 10.1038/srep24610.

8.

Antibacterial activity and mechanism of action of auranofin against multi-drug resistant bacterial pathogens.

Thangamani S, Mohammad H, Abushahba MF, Sobreira TJ, Hedrick VE, Paul LN, Seleem MN.

Sci Rep. 2016 Mar 3;6:22571. doi: 10.1038/srep22571.

9.

Repurposing auranofin for the treatment of cutaneous staphylococcal infections.

Thangamani S, Mohammad H, Abushahba MF, Sobreira TJ, Seleem MN.

Int J Antimicrob Agents. 2016 Mar;47(3):195-201. doi: 10.1016/j.ijantimicag.2015.12.016. Epub 2016 Jan 23.

10.

Exploring simvastatin, an antihyperlipidemic drug, as a potential topical antibacterial agent.

Thangamani S, Mohammad H, Abushahba MF, Hamed MI, Sobreira TJ, Hedrick VE, Paul LN, Seleem MN.

Sci Rep. 2015 Nov 10;5:16407. doi: 10.1038/srep16407.

11.

Identification of Salmonella Typhimurium Deubiquitinase SseL Substrates by Immunoaffinity Enrichment and Quantitative Proteomic Analysis.

Nakayasu ES, Sydor MA, Brown RN, Sontag RL, Sobreira TJ, Slysz GW, Humphrys DR, Skarina T, Onoprienko O, Di Leo R, Deatherage Kaiser BL, Li J, Ansong C, Cambronne ED, Smith RD, Savchenko A, Adkins JN.

J Proteome Res. 2015 Sep 4;14(9):4029-38. doi: 10.1021/acs.jproteome.5b00574. Epub 2015 Aug 6.

12.

Is RK-682 a promiscuous enzyme inhibitor? Synthesis and in vitro evaluation of protein tyrosine phosphatase inhibition of racemic RK-682 and analogues.

Carneiro VM, Trivella DB, Scorsato V, Beraldo VL, Dias MP, Sobreira TJ, Aparicio R, Pilli RA.

Eur J Med Chem. 2015 Jun 5;97:42-54. doi: 10.1016/j.ejmech.2015.04.036. Epub 2015 Apr 20.

PMID:
25938987
13.

Characterization of Lipids and Proteins Associated to the Cell Wall of the Acapsular Mutant Cryptococcus neoformans Cap 67.

Longo LV, Nakayasu ES, Pires JH, Gazos-Lopes F, Vallejo MC, Sobreira TJ, Almeida IC, Puccia R.

J Eukaryot Microbiol. 2015 Sep-Oct;62(5):591-604. doi: 10.1111/jeu.12213. Epub 2015 Mar 23.

14.

Comprehensive assessment of the disputed RET Y791F variant shows no association with medullary thyroid carcinoma susceptibility.

Toledo RA, Hatakana R, Lourenço DM Jr, Lindsey SC, Camacho CP, Almeida M, Lima JV Jr, Sekiya T, Garralda E, Naslavsky MS, Yamamoto GL, Lazar M, Meirelles O, Sobreira TJ, Lebrao ML, Duarte YA, Blangero J, Zatz M, Cerutti JM, Maciel RM, Toledo SP.

Endocr Relat Cancer. 2015 Feb;22(1):65-76. doi: 10.1530/ERC-14-0491. Epub 2014 Nov 25.

15.

Compositional and immunobiological analyses of extracellular vesicles released by Candida albicans.

Vargas G, Rocha JD, Oliveira DL, Albuquerque PC, Frases S, Santos SS, Nosanchuk JD, Gomes AM, Medeiros LC, Miranda K, Sobreira TJ, Nakayasu ES, Arigi EA, Casadevall A, Guimaraes AJ, Rodrigues ML, Freire-de-Lima CG, Almeida IC, Nimrichter L.

Cell Microbiol. 2015 Mar;17(3):389-407. doi: 10.1111/cmi.12374. Epub 2014 Nov 22.

PMID:
25287304
16.

KVFinder: steered identification of protein cavities as a PyMOL plugin.

Oliveira SH, Ferraz FA, Honorato RV, Xavier-Neto J, Sobreira TJ, de Oliveira PS.

BMC Bioinformatics. 2014 Jun 17;15:197. doi: 10.1186/1471-2105-15-197.

17.

Phosphate regulated proteins of Xanthomonas citri subsp. citri: a proteomic approach.

Pegos VR, Nascimento JF, Sobreira TJ, Pauletti BA, Paes-Leme A, Balan A.

J Proteomics. 2014 Aug 28;108:78-88. doi: 10.1016/j.jprot.2014.05.005. Epub 2014 May 17.

PMID:
24846853
18.

The gp82 surface molecule of Trypanosoma cruzi metacyclic forms.

Cortez C, Sobreira TJ, Maeda FY, Yoshida N.

Subcell Biochem. 2014;74:137-50. doi: 10.1007/978-94-007-7305-9_6. Review.

PMID:
24264244
19.

Multi-omic data integration links deleted in breast cancer 1 (DBC1) degradation to chromatin remodeling in inflammatory response.

Nakayasu ES, Brown RN, Ansong C, Sydor MA, Imtiaz S, Mihai C, Sontag R, Hixson KK, Monroe ME, Sobreira TJ, Orr G, Petyuk VA, Yang F, Smith RD, Adkins JN.

Mol Cell Proteomics. 2013 Aug;12(8):2136-47. doi: 10.1074/mcp.M112.026138. Epub 2013 May 2.

20.

Identification of human plasma proteins associated with the cell wall of the pathogenic fungus Paracoccidioides brasiliensis.

Longo LV, Nakayasu ES, Matsuo AL, Peres da Silva R, Sobreira TJ, Vallejo MC, Ganiko L, Almeida IC, Puccia R.

FEMS Microbiol Lett. 2013 Apr;341(2):87-95. doi: 10.1111/1574-6968.12097.

21.

Structural basis of the interaction of a Trypanosoma cruzi surface molecule implicated in oral infection with host cells and gastric mucin.

Cortez C, Yoshida N, Bahia D, Sobreira TJ.

PLoS One. 2012;7(7):e42153. doi: 10.1371/journal.pone.0042153. Epub 2012 Jul 31.

22.

Label-free quantitative proteomics reveals differentially regulated proteins in the latex of sticky diseased Carica papaya L. plants.

Rodrigues SP, Ventura JA, Aguilar C, Nakayasu ES, Choi H, Sobreira TJ, Nohara LL, Wermelinger LS, Almeida IC, Zingali RB, Fernandes PM.

J Proteomics. 2012 Jun 18;75(11):3191-8. doi: 10.1016/j.jprot.2012.03.021. Epub 2012 Mar 24.

23.

An unauthorized biography of the second heart field and a pioneer/scaffold model for cardiac development.

Xavier-Neto J, Trueba SS, Stolfi A, Souza HM, Sobreira TJ, Schubert M, Castillo HA.

Curr Top Dev Biol. 2012;100:67-105. doi: 10.1016/B978-0-12-387786-4.00003-8. Review.

PMID:
22449841
24.

Vesicle and vesicle-free extracellular proteome of Paracoccidioides brasiliensis: comparative analysis with other pathogenic fungi.

Vallejo MC, Nakayasu ES, Matsuo AL, Sobreira TJ, Longo LV, Ganiko L, Almeida IC, Puccia R.

J Proteome Res. 2012 Mar 2;11(3):1676-85. doi: 10.1021/pr200872s. Epub 2012 Feb 14.

25.

Mutations in the human phospholamban gene in patients with heart failure.

Medeiros A, Biagi DG, Sobreira TJ, de Oliveira PS, Negrão CE, Mansur AJ, Krieger JE, Brum PC, Pereira AC.

Am Heart J. 2011 Dec;162(6):1088-1095.e1. doi: 10.1016/j.ahj.2011.07.028. Epub 2011 Nov 8.

PMID:
22137083
26.

Improved proteomic approach for the discovery of potential vaccine targets in Trypanosoma cruzi.

Nakayasu ES, Sobreira TJ, Torres R Jr, Ganiko L, Oliveira PS, Marques AF, Almeida IC.

J Proteome Res. 2012 Jan 1;11(1):237-46. doi: 10.1021/pr200806s. Epub 2011 Dec 8.

27.

SUMOylation pathway in Trypanosoma cruzi: functional characterization and proteomic analysis of target proteins.

Bayona JC, Nakayasu ES, Laverrière M, Aguilar C, Sobreira TJ, Choi H, Nesvizhskii AI, Almeida IC, Cazzulo JJ, Alvarez VE.

Mol Cell Proteomics. 2011 Dec;10(12):M110.007369. doi: 10.1074/mcp.M110.007369. Epub 2011 Aug 10.

28.

Histoplasma capsulatum heat-shock 60 orchestrates the adaptation of the fungus to temperature stress.

Guimarães AJ, Nakayasu ES, Sobreira TJ, Cordero RJ, Nimrichter L, Almeida IC, Nosanchuk JD.

PLoS One. 2011 Feb 10;6(2):e14660. doi: 10.1371/journal.pone.0014660.

29.

Biogenesis of extracellular vesicles in yeast: Many questions with few answers.

Oliveira DL, Nakayasu ES, Joffe LS, Guimarães AJ, Sobreira TJ, Nosanchuk JD, Cordero RJ, Frases S, Casadevall A, Almeida IC, Nimrichter L, Rodrigues ML.

Commun Integr Biol. 2010 Nov;3(6):533-5. doi: 10.4161/cib.3.6.12756. Epub 2010 Nov 1.

30.

Global analysis of protein palmitoylation in African trypanosomes.

Emmer BT, Nakayasu ES, Souther C, Choi H, Sobreira TJ, Epting CL, Nesvizhskii AI, Almeida IC, Engman DM.

Eukaryot Cell. 2011 Mar;10(3):455-63. doi: 10.1128/EC.00248-10. Epub 2010 Dec 30.

31.

Structural shifts of aldehyde dehydrogenase enzymes were instrumental for the early evolution of retinoid-dependent axial patterning in metazoans.

Sobreira TJ, Marlétaz F, Simões-Costa M, Schechtman D, Pereira AC, Brunet F, Sweeney S, Pani A, Aronowicz J, Lowe CJ, Davidson B, Laudet V, Bronner M, de Oliveira PS, Schubert M, Xavier-Neto J.

Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):226-31. doi: 10.1073/pnas.1011223108. Epub 2010 Dec 17.

32.

HFE gene mutations in patients with primary iron overload: is there a significant improvement in molecular diagnosis yield with HFE sequencing?

Santos PC, Pereira AC, Cançado RD, Schettert IT, Sobreira TJ, Oliveira PS, Hirata RD, Hirata MH, Figueiredo MS, Chiattone CS, Krieger JE, Guerra-Shinohara EM.

Blood Cells Mol Dis. 2010 Dec 15;45(4):302-7. doi: 10.1016/j.bcmd.2010.08.008. Epub 2010 Sep 16.

PMID:
20843714
33.

Characterization of yeast extracellular vesicles: evidence for the participation of different pathways of cellular traffic in vesicle biogenesis.

Oliveira DL, Nakayasu ES, Joffe LS, Guimarães AJ, Sobreira TJ, Nosanchuk JD, Cordero RJ, Frases S, Casadevall A, Almeida IC, Nimrichter L, Rodrigues ML.

PLoS One. 2010 Jun 14;5(6):e11113. doi: 10.1371/journal.pone.0011113.

34.

ALDH1A2 (RALDH2) genetic variation in human congenital heart disease.

Pavan M, Ruiz VF, Silva FA, Sobreira TJ, Cravo RM, Vasconcelos M, Marques LP, Mesquita SM, Krieger JE, Lopes AA, Oliveira PS, Pereira AC, Xavier-Neto J.

BMC Med Genet. 2009 Nov 3;10:113. doi: 10.1186/1471-2350-10-113.

35.

Phosphoproteomic analysis of the human pathogen Trypanosoma cruzi at the epimastigote stage.

Nakayasu ES, Gaynor MR, Sobreira TJ, Ross JA, Almeida IC.

Proteomics. 2009 Jul;9(13):3489-506. doi: 10.1002/pmic.200800874.

36.

Sequence-specific reconstruction from fragmentary databases using seed sequences: implementation and validation on SAGE, proteome and generic sequencing data.

Sobreira TJ, Gruber A.

Bioinformatics. 2008 Aug 1;24(15):1676-80. doi: 10.1093/bioinformatics/btn283. Epub 2008 Jun 9.

PMID:
18544546
37.

Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization.

Ling KH, Rajandream MA, Rivailler P, Ivens A, Yap SJ, Madeira AM, Mungall K, Billington K, Yee WY, Bankier AT, Carroll F, Durham AM, Peters N, Loo SS, Isa MN, Novaes J, Quail M, Rosli R, Nor Shamsudin M, Sobreira TJ, Tivey AR, Wai SF, White S, Wu X, Kerhornou A, Blake D, Mohamed R, Shirley M, Gruber A, Berriman M, Tomley F, Dear PH, Wan KL.

Genome Res. 2007 Mar;17(3):311-9. Epub 2007 Feb 6.

38.

TRAP: automated classification, quantification and annotation of tandemly repeated sequences.

Sobreira TJ, Durham AM, Gruber A.

Bioinformatics. 2006 Feb 1;22(3):361-2. Epub 2005 Dec 6.

PMID:
16332714

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