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Phosphoproteome dynamics during mitotic exit in budding yeast.

Touati SA, Kataria M, Jones AW, Snijders AP, Uhlmann F.

EMBO J. 2018 Apr 12. pii: e98745. doi: 10.15252/embj.201798745. [Epub ahead of print]


Publisher Correction: A protease cascade regulates release of the human malaria parasite Plasmodium falciparum from host red blood cells.

Thomas JA, Tan MSY, Bisson C, Borg A, Umrekar TR, Hackett F, Hale VL, Vizcay-Barrena G, Fleck RA, Snijders AP, Saibil HR, Blackman MJ.

Nat Microbiol. 2018 Apr;3(4):523. doi: 10.1038/s41564-018-0134-6.


Murine Gbp1 and Gbp2 are ubiquitinated independent of Toxoplasma gondii infection.

Encheva V, Foltz C, Snijders AP, Frickel EM.

BMC Res Notes. 2018 Mar 6;11(1):166. doi: 10.1186/s13104-018-3267-z.


Spatiotemporal regulation of Aurora B recruitment ensures release of cohesion during C. elegans oocyte meiosis.

Ferrandiz N, Barroso C, Telecan O, Shao N, Kim HM, Testori S, Faull P, Cutillas P, Snijders AP, Colaiácovo MP, Martinez-Perez E.

Nat Commun. 2018 Feb 26;9(1):834. doi: 10.1038/s41467-018-03229-5.


A protease cascade regulates release of the human malaria parasite Plasmodium falciparum from host red blood cells.

Thomas JA, Tan MSY, Bisson C, Borg A, Umrekar TR, Hackett F, Hale VL, Vizcay-Barrena G, Fleck RA, Snijders AP, Saibil HR, Blackman MJ.

Nat Microbiol. 2018 Apr;3(4):447-455. doi: 10.1038/s41564-018-0111-0. Epub 2018 Feb 19. Erratum in: Nat Microbiol. 2018 Mar 6;:.


The RIG-I-like receptor LGP2 inhibits Dicer-dependent processing of long double-stranded RNA and blocks RNA interference in mammalian cells.

van der Veen AG, Maillard PV, Schmidt JM, Lee SA, Deddouche-Grass S, Borg A, Kjær S, Snijders AP, Reis E Sousa C.

EMBO J. 2018 Feb 15;37(4). pii: e97479. doi: 10.15252/embj.201797479. Epub 2018 Jan 19.


The deubiquitinase USP9X regulates FBW7 stability and suppresses colorectal cancer.

Khan OM, Carvalho J, Spencer-Dene B, Mitter R, Frith D, Snijders AP, Wood SA, Behrens A.

J Clin Invest. 2018 Apr 2;128(4):1326-1337. doi: 10.1172/JCI97325. Epub 2018 Feb 26.


Heteromeric interactions regulate butyrophilin (BTN) and BTN-like molecules governing γδ T cell biology.

Vantourout P, Laing A, Woodward MJ, Zlatareva I, Apolonia L, Jones AW, Snijders AP, Malim MH, Hayday AC.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):1039-1044. doi: 10.1073/pnas.1701237115. Epub 2018 Jan 16.


USP11 deubiquitinates RAE1 and plays a key role in bipolar spindle formation.

Stockum A, Snijders AP, Maertens GN.

PLoS One. 2018 Jan 2;13(1):e0190513. doi: 10.1371/journal.pone.0190513. eCollection 2018.


Oncogenic RAS Signaling Promotes Tumor Immunoresistance by Stabilizing PD-L1 mRNA.

Coelho MA, de Carné Trécesson S, Rana S, Zecchin D, Moore C, Molina-Arcas M, East P, Spencer-Dene B, Nye E, Barnouin K, Snijders AP, Lai WS, Blackshear PJ, Downward J.

Immunity. 2017 Dec 19;47(6):1083-1099.e6. doi: 10.1016/j.immuni.2017.11.016. Epub 2017 Dec 12.


Identification of SUMO conjugation sites in the budding yeast proteome.

Esteras M, Liu IC, Snijders AP, Jarmuz A, Aragon L.

Microb Cell. 2017 Oct 2;4(10):331-341. doi: 10.15698/mic2017.10.593.


USP7 Is a Tumor-Specific WNT Activator for APC-Mutated Colorectal Cancer by Mediating β-Catenin Deubiquitination.

Novellasdemunt L, Foglizzo V, Cuadrado L, Antas P, Kucharska A, Encheva V, Snijders AP, Li VSW.

Cell Rep. 2017 Oct 17;21(3):612-627. doi: 10.1016/j.celrep.2017.09.072.


Centriolar Satellites Control GABARAP Ubiquitination and GABARAP-Mediated Autophagy.

Joachim J, Razi M, Judith D, Wirth M, Calamita E, Encheva V, Dynlacht BD, Snijders AP, O'Reilly N, Jefferies HBJ, Tooze SA.

Curr Biol. 2017 Jul 24;27(14):2123-2136.e7. doi: 10.1016/j.cub.2017.06.021. Epub 2017 Jul 14.


A systematic genomic screen implicates nucleocytoplasmic transport and membrane growth in nuclear size control.

Kume K, Cantwell H, Neumann FR, Jones AW, Snijders AP, Nurse P.

PLoS Genet. 2017 May 18;13(5):e1006767. doi: 10.1371/journal.pgen.1006767. eCollection 2017 May.


Erratum: Structural Basis of Eco1-Mediated Cohesin Acetylation.

Chao WC, Wade BO, Bouchoux C, Jones AW, Purkiss AG, Federico S, O'Reilly N, Snijders AP, Uhlmann F, Singleton MR.

Sci Rep. 2017 Apr 11;7:46382. doi: 10.1038/srep46382. No abstract available.


Structural Basis of Eco1-Mediated Cohesin Acetylation.

Chao WC, Wade BO, Bouchoux C, Jones AW, Purkiss AG, Federico S, O'Reilly N, Snijders AP, Uhlmann F, Singleton MR.

Sci Rep. 2017 Mar 14;7:44313. doi: 10.1038/srep44313.


Integrin Beta 3 Regulates Cellular Senescence by Activating the TGF-β Pathway.

Rapisarda V, Borghesan M, Miguela V, Encheva V, Snijders AP, Lujambio A, O'Loghlen A.

Cell Rep. 2017 Mar 7;18(10):2480-2493. doi: 10.1016/j.celrep.2017.02.012.


Cyclin D mediates tolerance of genome-doubling in cancers with functional p53.

Crockford A, Zalmas LP, Grönroos E, Dewhurst SM, McGranahan N, Cuomo ME, Encheva V, Snijders AP, Begum J, Purewal S, Cerveira J, Patel H, Renshaw MJ, Swanton C.

Ann Oncol. 2017 Jan 1;28(1):149-156. doi: 10.1093/annonc/mdw612.


PP2ACdc55 Phosphatase Imposes Ordered Cell-Cycle Phosphorylation by Opposing Threonine Phosphorylation.

Godfrey M, Touati SA, Kataria M, Jones A, Snijders AP, Uhlmann F.

Mol Cell. 2017 Feb 2;65(3):393-402.e3. doi: 10.1016/j.molcel.2016.12.018. Epub 2017 Jan 26.


Structure of the cohesin loader Scc2.

Chao WC, Murayama Y, Muñoz S, Jones AW, Wade BO, Purkiss AG, Hu XW, Borg A, Snijders AP, Uhlmann F, Singleton MR.

Nat Commun. 2017 Jan 6;8:13952. doi: 10.1038/ncomms13952.


The FA Core Complex Contains a Homo-dimeric Catalytic Module for the Symmetric Mono-ubiquitination of FANCI-FANCD2.

Swuec P, Renault L, Borg A, Shah F, Murphy VJ, van Twest S, Snijders AP, Deans AJ, Costa A.

Cell Rep. 2017 Jan 17;18(3):611-623. doi: 10.1016/j.celrep.2016.11.013. Epub 2016 Dec 13.


CDK Substrate Phosphorylation and Ordering the Cell Cycle.

Swaffer MP, Jones AW, Flynn HR, Snijders AP, Nurse P.

Cell. 2016 Dec 15;167(7):1750-1761.e16. doi: 10.1016/j.cell.2016.11.034.


Photosensitized UVA-Induced Cross-Linking between Human DNA Repair and Replication Proteins and DNA Revealed by Proteomic Analysis.

Guven M, Barnouin K, Snijders AP, Karran P.

J Proteome Res. 2016 Dec 2;15(12):4612-4623. Epub 2016 Oct 5.


aPKC Inhibition by Par3 CR3 Flanking Regions Controls Substrate Access and Underpins Apical-Junctional Polarization.

Soriano EV, Ivanova ME, Fletcher G, Riou P, Knowles PP, Barnouin K, Purkiss A, Kostelecky B, Saiu P, Linch M, Elbediwy A, Kjær S, O'Reilly N, Snijders AP, Parker PJ, Thompson BJ, McDonald NQ.

Dev Cell. 2016 Aug 22;38(4):384-98. doi: 10.1016/j.devcel.2016.07.018.


Glutamate Racemase Is the Primary Target of β-Chloro-d-Alanine in Mycobacterium tuberculosis.

Prosser GA, Rodenburg A, Khoury H, de Chiara C, Howell S, Snijders AP, de Carvalho LP.

Antimicrob Agents Chemother. 2016 Sep 23;60(10):6091-9. doi: 10.1128/AAC.01249-16. Print 2016 Oct.


TLR and TNF-R1 activation of the MKK3/MKK6-p38α axis in macrophages is mediated by TPL-2 kinase.

Pattison MJ, Mitchell O, Flynn HR, Chen CS, Yang HT, Ben-Addi H, Boeing S, Snijders AP, Ley SC.

Biochem J. 2016 Sep 15;473(18):2845-61. doi: 10.1042/BCJ20160502. Epub 2016 Jul 11.


Multiomic Analysis of the UV-Induced DNA Damage Response.

Boeing S, Williamson L, Encheva V, Gori I, Saunders RE, Instrell R, Aygün O, Rodriguez-Martinez M, Weems JC, Kelly GP, Conaway JW, Conaway RC, Stewart A, Howell M, Snijders AP, Svejstrup JQ.

Cell Rep. 2016 May 17;15(7):1597-1610. doi: 10.1016/j.celrep.2016.04.047. Epub 2016 May 12.


A ubiquitylation site in Cockayne syndrome B required for repair of oxidative DNA damage, but not for transcription-coupled nucleotide excision repair.

Ranes M, Boeing S, Wang Y, Wienholz F, Menoni H, Walker J, Encheva V, Chakravarty P, Mari PO, Stewart A, Giglia-Mari G, Snijders AP, Vermeulen W, Svejstrup JQ.

Nucleic Acids Res. 2016 Jun 20;44(11):5246-55. doi: 10.1093/nar/gkw216. Epub 2016 Apr 7.


The MAP kinase pathway coordinates crossover designation with disassembly of synaptonemal complex proteins during meiosis.

Nadarajan S, Mohideen F, Tzur YB, Ferrandiz N, Crawley O, Montoya A, Faull P, Snijders AP, Cutillas PR, Jambhekar A, Blower MD, Martinez-Perez E, Harper JW, Colaiacovo MP.

Elife. 2016 Feb 27;5:e12039. doi: 10.7554/eLife.12039.


A non-canonical function of Plk4 in centriolar satellite integrity and ciliogenesis through PCM1 phosphorylation.

Hori A, Barnouin K, Snijders AP, Toda T.

EMBO Rep. 2016 Mar;17(3):326-37. doi: 10.15252/embr.201541432. Epub 2016 Jan 11.


TBC1D14 regulates autophagy via the TRAPP complex and ATG9 traffic.

Lamb CA, Nühlen S, Judith D, Frith D, Snijders AP, Behrends C, Tooze SA.

EMBO J. 2016 Feb 1;35(3):281-301. doi: 10.15252/embj.201592695. Epub 2015 Dec 28.


Activation of ULK Kinase and Autophagy by GABARAP Trafficking from the Centrosome Is Regulated by WAC and GM130.

Joachim J, Jefferies HB, Razi M, Frith D, Snijders AP, Chakravarty P, Judith D, Tooze SA.

Mol Cell. 2015 Dec 17;60(6):899-913. doi: 10.1016/j.molcel.2015.11.018.


Analysis of Signaling Endosome Composition and Dynamics Using SILAC in Embryonic Stem Cell-Derived Neurons.

Debaisieux S, Encheva V, Chakravarty P, Snijders AP, Schiavo G.

Mol Cell Proteomics. 2016 Feb;15(2):542-57. doi: 10.1074/mcp.M115.051649. Epub 2015 Dec 18.


The conserved Wdr8-hMsd1/SSX2IP complex localises to the centrosome and ensures proper spindle length and orientation.

Hori A, Morand A, Ikebe C, Frith D, Snijders AP, Toda T.

Biochem Biophys Res Commun. 2015 Dec 4-11;468(1-2):39-45. doi: 10.1016/j.bbrc.2015.10.169. Epub 2015 Nov 10.


Casein kinase 1γ acts as a molecular switch for cell polarization through phosphorylation of the polarity factor Tea1 in fission yeast.

Koyano T, Barnouin K, Snijders AP, Kume K, Hirata D, Toda T.

Genes Cells. 2015 Dec;20(12):1046-58. doi: 10.1111/gtc.12309. Epub 2015 Nov 2.


Notum deacylates Wnt proteins to suppress signalling activity.

Kakugawa S, Langton PF, Zebisch M, Howell S, Chang TH, Liu Y, Feizi T, Bineva G, O'Reilly N, Snijders AP, Jones EY, Vincent JP.

Nature. 2015 Mar 12;519(7542):187-192. doi: 10.1038/nature14259. Epub 2015 Feb 25.


Arginine methylation and citrullination of splicing factor proline- and glutamine-rich (SFPQ/PSF) regulates its association with mRNA.

Snijders AP, Hautbergue GM, Bloom A, Williamson JC, Minshull TC, Phillips HL, Mihaylov SR, Gjerde DT, Hornby DP, Wilson SA, Hurd PJ, Dickman MJ.

RNA. 2015 Mar;21(3):347-59. doi: 10.1261/rna.045138.114. Epub 2015 Jan 20.


The fidelity of synaptonemal complex assembly is regulated by a signaling mechanism that controls early meiotic progression.

Silva N, Ferrandiz N, Barroso C, Tognetti S, Lightfoot J, Telecan O, Encheva V, Faull P, Hanni S, Furger A, Snijders AP, Speck C, Martinez-Perez E.

Dev Cell. 2014 Nov 24;31(4):503-11. doi: 10.1016/j.devcel.2014.10.001. Epub 2014 Nov 6.


Nuclear proteasomes carry a constitutive posttranslational modification which derails SDS-PAGE (but not CTAB-PAGE).

Pitcher DS, de Mattos-Shipley K, Wang Z, Tzortzis K, Goudevenou K, Flynn H, Bohn G, Rahemtulla A, Roberts I, Snijders AP, Karadimitris A, Kleijnen MF.

Biochim Biophys Acta. 2014 Dec;1844(12):2222-8. doi: 10.1016/j.bbapap.2014.08.013. Epub 2014 Sep 2.


UBR5-mediated ubiquitination of ATMIN is required for ionizing radiation-induced ATM signaling and function.

Zhang T, Cronshaw J, Kanu N, Snijders AP, Behrens A.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12091-6. doi: 10.1073/pnas.1400230111. Epub 2014 Aug 4.


Archaeal MBF1 binds to 30S and 70S ribosomes via its helix-turn-helix domain.

Blombach F, Launay H, Snijders AP, Zorraquino V, Wu H, de Koning B, Brouns SJ, Ettema TJ, Camilloni C, Cavalli A, Vendruscolo M, Dickman MJ, Cabrita LD, La Teana A, Benelli D, Londei P, Christodoulou J, van der Oost J.

Biochem J. 2014 Sep 1;462(2):373-84. doi: 10.1042/BJ20131474.


Crumbs promotes expanded recognition and degradation by the SCF(Slimb/β-TrCP) ubiquitin ligase.

Ribeiro P, Holder M, Frith D, Snijders AP, Tapon N.

Proc Natl Acad Sci U S A. 2014 May 13;111(19):E1980-9. doi: 10.1073/pnas.1315508111. Epub 2014 Apr 28.


STXBP1 promotes Weibel-Palade body exocytosis through its interaction with the Rab27A effector Slp4-a.

van Breevoort D, Snijders AP, Hellen N, Weckhuysen S, van Hooren KW, Eikenboom J, Valentijn K, Fernandez-Borja M, Ceulemans B, De Jonghe P, Voorberg J, Hannah M, Carter T, Bierings R.

Blood. 2014 May 15;123(20):3185-94. doi: 10.1182/blood-2013-10-535831. Epub 2014 Apr 3.


Prereplicative complexes assembled in vitro support origin-dependent and independent DNA replication.

On KF, Beuron F, Frith D, Snijders AP, Morris EP, Diffley JF.

EMBO J. 2014 Mar 18;33(6):605-20. doi: 10.1002/embj.201387369. Epub 2014 Feb 24.


DNA-guided DNA interference by a prokaryotic Argonaute.

Swarts DC, Jore MM, Westra ER, Zhu Y, Janssen JH, Snijders AP, Wang Y, Patel DJ, Berenguer J, Brouns SJJ, van der Oost J.

Nature. 2014 Mar 13;507(7491):258-261. doi: 10.1038/nature12971. Epub 2014 Feb 16.


Identification and biochemical analysis of a novel APOB mutation that causes autosomal dominant hypercholesterolemia.

Thomas ER, Atanur SS, Norsworthy PJ, Encheva V, Snijders AP, Game L, Vandrovcova J, Siddiq A, Seed M, Soutar AK, Aitman TJ.

Mol Genet Genomic Med. 2013 Sep;1(3):155-61. doi: 10.1002/mgg3.17. Epub 2013 Jun 13.


Structural basis for nuclear import of splicing factors by human Transportin 3.

Maertens GN, Cook NJ, Wang W, Hare S, Gupta SS, Öztop I, Lee K, Pye VE, Cosnefroy O, Snijders AP, KewalRamani VN, Fassati A, Engelman A, Cherepanov P.

Proc Natl Acad Sci U S A. 2014 Feb 18;111(7):2728-33. doi: 10.1073/pnas.1320755111. Epub 2014 Jan 21.


A complex secretory program orchestrated by the inflammasome controls paracrine senescence.

Acosta JC, Banito A, Wuestefeld T, Georgilis A, Janich P, Morton JP, Athineos D, Kang TW, Lasitschka F, Andrulis M, Pascual G, Morris KJ, Khan S, Jin H, Dharmalingam G, Snijders AP, Carroll T, Capper D, Pritchard C, Inman GJ, Longerich T, Sansom OJ, Benitah SA, Zender L, Gil J.

Nat Cell Biol. 2013 Aug;15(8):978-90. doi: 10.1038/ncb2784. Epub 2013 Jun 16.


Interplay between Homeobox proteins and Polycomb repressive complexes in p16INK⁴a regulation.

Martin N, Popov N, Aguilo F, O'Loghlen A, Raguz S, Snijders AP, Dharmalingam G, Li S, Thymiakou E, Carroll T, Zeisig BB, So CW, Peters G, Episkopou V, Walsh MJ, Gil J.

EMBO J. 2013 Apr 3;32(7):982-95. doi: 10.1038/emboj.2013.37. Epub 2013 Mar 1.


Unbiased characterization of the senescence-associated secretome using SILAC-based quantitative proteomics.

Acosta JC, Snijders AP, Gil J.

Methods Mol Biol. 2013;965:175-84. doi: 10.1007/978-1-62703-239-1_11.


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