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Deterministic Evolutionary Trajectories Influence Primary Tumor Growth: TRACERx Renal.

Turajlic S, Xu H, Litchfield K, Rowan A, Horswell S, Chambers T, O'Brien T, Lopez JI, Watkins TBK, Nicol D, Stares M, Challacombe B, Hazell S, Chandra A, Mitchell TJ, Au L, Eichler-Jonsson C, Jabbar F, Soultati A, Chowdhury S, Rudman S, Lynch J, Fernando A, Stamp G, Nye E, Stewart A, Xing W, Smith JC, Escudero M, Huffman A, Matthews N, Elgar G, Phillimore B, Costa M, Begum S, Ward S, Salm M, Boeing S, Fisher R, Spain L, Navas C, Grönroos E, Hobor S, Sharma S, Aurangzeb I, Lall S, Polson A, Varia M, Horsfield C, Fotiadis N, Pickering L, Schwarz RF, Silva B, Herrero J, Luscombe NM, Jamal-Hanjani M, Rosenthal R, Birkbak NJ, Wilson GA, Pipek O, Ribli D, Krzystanek M, Csabai I, Szallasi Z, Gore M, McGranahan N, Van Loo P, Campbell P, Larkin J, Swanton C; TRACERx Renal Consortium.

Cell. 2018 Apr 11. pii: S0092-8674(18)30375-1. doi: 10.1016/j.cell.2018.03.043. [Epub ahead of print]


Quantum Chemical Calculation of p Kas of Environmentally Relevant Functional Groups: Carboxylic Acids, Amines, and Thiols in Aqueous Solution.

Lian P, Johnston RC, Parks JM, Smith JC.

J Phys Chem A. 2018 Apr 19. doi: 10.1021/acs.jpca.8b01751. [Epub ahead of print]


Effect of Passive Drying on Ascorbic Acid, α-Tocopherol, and β-Carotene in Tomato and Mango.

Smith JC, Biasi WV, Holstege D, Mitcham EJ.

J Food Sci. 2018 Apr 6. doi: 10.1111/1750-3841.14118. [Epub ahead of print]


Acute Effect of Foam Rolling and Dynamic Stretching on Flexibility and Jump Height.

Smith JC, Pridgeon B, Hall MC.

J Strength Cond Res. 2018 Apr 4. doi: 10.1519/JSC.0000000000002321. [Epub ahead of print]


Social Capital, Depressive Symptoms, and HIV Viral Suppression Among Young Black, Gay, Bisexual and Other Men Who Have Sex with Men Living with HIV.

Hussen SA, Easley KA, Smith JC, Shenvi N, Harper GW, Camacho-Gonzalez AF, Stephenson R, Del Rio C.

AIDS Behav. 2018 Apr 4. doi: 10.1007/s10461-018-2105-6. [Epub ahead of print]


Ensemble Docking in Drug Discovery.

Amaro RE, Baudry J, Chodera J, Demir Ö, McCammon JA, Miao Y, Smith JC.

Biophys J. 2018 Mar 29. pii: S0006-3495(18)30324-2. doi: 10.1016/j.bpj.2018.02.038. [Epub ahead of print] Review.


Determination of Dynamical Heterogeneity from Dynamic Neutron-Scattering of Proteins.

Vural D, Smith JC, Glyde HR.

Biophys J. 2018 Mar 23. pii: S0006-3495(18)30256-X. doi: 10.1016/j.bpj.2018.02.024. [Epub ahead of print]


Dynamic Neutron Scattering by Biological Systems.

Smith JC, Tan P, Petridis L, Hong L.

Annu Rev Biophys. 2018 Mar 21. doi: 10.1146/annurev-biophys-070317-033358. [Epub ahead of print]


Placentation defects are highly prevalent in embryonic lethal mouse mutants.

Perez-Garcia V, Fineberg E, Wilson R, Murray A, Mazzeo CI, Tudor C, Sienerth A, White JK, Tuck E, Ryder EJ, Gleeson D, Siragher E, Wardle-Jones H, Staudt N, Wali N, Collins J, Geyer S, Busch-Nentwich EM, Galli A, Smith JC, Robertson E, Adams DJ, Weninger WJ, Mohun T, Hemberger M.

Nature. 2018 Mar 22;555(7697):463-468. doi: 10.1038/nature26002. Epub 2018 Mar 14.


Catalysis of Ground State cis[Formula: see text] trans Isomerization of Bacteriorhodopsin's Retinal Chromophore by a Hydrogen-Bond Network.

Elghobashi-Meinhardt N, Phatak P, Bondar AN, Elstner M, Smith JC.

J Membr Biol. 2018 Mar 8. doi: 10.1007/s00232-018-0027-x. [Epub ahead of print]


PAWS1 controls Wnt signalling through association with casein kinase 1α.

Bozatzi P, Dingwell KS, Wu KZ, Cooper F, Cummins TD, Hutchinson LD, Vogt J, Wood NT, Macartney TJ, Varghese J, Gourlay R, Campbell DG, Smith JC, Sapkota GP.

EMBO Rep. 2018 Apr;19(4). pii: e44807. doi: 10.15252/embr.201744807. Epub 2018 Mar 7.


Efficacy of antegrade and retrograde warm saline pyeloperfusion during renal cryoablation for ureteral preservation.

West B, Keheila M, Smith JC, Erskine A, Abourbih SR, Khater N, Baldwin DD.

Turk J Urol. 2018 Mar;44(2):142-147. doi: 10.5152/tud.2017.44380. Epub 2018 Mar 1.


A NuRD Complex from Xenopus laevis Eggs Is Essential for DNA Replication during Early Embryogenesis.

Christov CP, Dingwell KS, Skehel M, Wilkes HS, Sale JE, Smith JC, Krude T.

Cell Rep. 2018 Feb 27;22(9):2265-2278. doi: 10.1016/j.celrep.2018.02.015.


Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus.

Gentsch GE, Spruce T, Monteiro RS, Owens NDL, Martin SR, Smith JC.

Dev Cell. 2018 Mar 12;44(5):597-610.e10. doi: 10.1016/j.devcel.2018.01.022. Epub 2018 Feb 22.


GPCR6A Is a Molecular Target for the Natural Products Gallate and EGCG in Green Tea.

Pi M, Kapoor K, Ye R, Smith JC, Baudry J, Quarles LD.

Mol Nutr Food Res. 2018 Feb 21:e1700770. doi: 10.1002/mnfr.201700770. [Epub ahead of print]


Transient Receptor Potential Channels TRPM4 and TRPC3 Critically Contribute to Respiratory Motor Pattern Formation but not Rhythmogenesis in Rodent Brainstem Circuits.

Koizumi H, John TT, Chia JX, Tariq MF, Phillips RS, Mosher B, Chen Y, Thompson R, Zhang R, Koshiya N, Smith JC.

eNeuro. 2018 Feb 9;5(1). pii: ENEURO.0332-17.2018. doi: 10.1523/ENEURO.0332-17.2018. eCollection 2018 Jan-Feb.


"To Be or Not to Be" Protonated: Atomic Details of Human Carbonic Anhydrase-Clinical Drug Complexes by Neutron Crystallography and Simulation.

Kovalevsky A, Aggarwal M, Velazquez H, Cuneo MJ, Blakeley MP, Weiss KL, Smith JC, Fisher SZ, McKenna R.

Structure. 2018 Mar 6;26(3):383-390.e3. doi: 10.1016/j.str.2018.01.006. Epub 2018 Feb 8.


MELK expression correlates with tumor mitotic activity but is not required for cancer growth.

Giuliano CJ, Lin A, Smith JC, Palladino AC, Sheltzer JM.

Elife. 2018 Feb 8;7. pii: e32838. doi: 10.7554/eLife.32838.


Knockdown of Laminin gamma-3 (Lamc3) impairs motoneuron guidance in the zebrafish embryo.

Eve AMJ, Smith JC.

Wellcome Open Res. 2017 Nov 16;2:111. doi: 10.12688/wellcomeopenres.12394.1. eCollection 2017.


Characterizing bacterial glycoproteins with LC-MS.

Fulton KM, Li J, Tomas JM, Smith JC, Twine SM.

Expert Rev Proteomics. 2018 Mar;15(3):203-216. doi: 10.1080/14789450.2018.1435276. Epub 2018 Feb 9.


Astrocytes modulate brainstem respiratory rhythm-generating circuits and determine exercise capacity.

Sheikhbahaei S, Turovsky EA, Hosford PS, Hadjihambi A, Theparambil SM, Liu B, Marina N, Teschemacher AG, Kasparov S, Smith JC, Gourine AV.

Nat Commun. 2018 Jan 25;9(1):370. doi: 10.1038/s41467-017-02723-6.


Effects of carotenoids on lipid bilayers.

Johnson QR, Mostofian B, Fuente Gomez G, Smith JC, Cheng X.

Phys Chem Chem Phys. 2018 Jan 31;20(5):3795-3804. doi: 10.1039/c7cp07126d.


Dynamical Transition of Collective Motions in Dry Proteins.

Liu Z, Huang J, Tyagi M, O'Neill H, Zhang Q, Mamontov E, Jain N, Wang Y, Zhang J, Smith JC, Hong L.

Phys Rev Lett. 2017 Jul 28;119(4):048101. doi: 10.1103/PhysRevLett.119.048101. Epub 2017 Jul 25.


Relationship between lignocellulosic biomass dissolution and physicochemical properties of ionic liquids composed of 3-methylimidazolium cations and carboxylate anions.

Moyer P, Smith MD, Abdoulmoumine N, Chmely SC, Smith JC, Petridis L, Labbé N.

Phys Chem Chem Phys. 2018 Jan 24;20(4):2508-2516. doi: 10.1039/c7cp07195g.


Polycystin-1 interacts with TAZ to stimulate osteoblastogenesis and inhibit adipogenesis.

Xiao Z, Baudry J, Cao L, Huang J, Chen H, Yates CR, Li W, Dong B, Waters CM, Smith JC, Quarles LD.

J Clin Invest. 2018 Jan 2;128(1):157-174. doi: 10.1172/JCI93725. Epub 2017 Nov 27.


PAWS1 controls cytoskeletal dynamics and cell migration through association with the SH3 adaptor CD2AP.

Cummins TD, Wu KZL, Bozatzi P, Dingwell KS, Macartney TJ, Wood NT, Varghese J, Gourlay R, Campbell DG, Prescott A, Griffis E, Smith JC, Sapkota GP.

J Cell Sci. 2018 Jan 10;131(1). pii: jcs202390. doi: 10.1242/jcs.202390.


Subhepatic Ectopic Pregnancy: Image-Guided Percutaneous Intervention.

Langheinrich K, Smith JC, Lee JH.

J Vasc Interv Radiol. 2017 Dec;28(12):1700-1701. doi: 10.1016/j.jvir.2017.06.033. No abstract available.


Neratinib after trastuzumab-based adjuvant therapy in HER2-positive breast cancer (ExteNET): 5-year analysis of a randomised, double-blind, placebo-controlled, phase 3 trial.

Martin M, Holmes FA, Ejlertsen B, Delaloge S, Moy B, Iwata H, von Minckwitz G, Chia SKL, Mansi J, Barrios CH, Gnant M, Tomašević Z, Denduluri N, Šeparović R, Gokmen E, Bashford A, Ruiz Borrego M, Kim SB, Jakobsen EH, Ciceniene A, Inoue K, Overkamp F, Heijns JB, Armstrong AC, Link JS, Joy AA, Bryce R, Wong A, Moran S, Yao B, Xu F, Auerbach A, Buyse M, Chan A; ExteNET Study Group.

Lancet Oncol. 2017 Dec;18(12):1688-1700. doi: 10.1016/S1470-2045(17)30717-9. Epub 2017 Nov 13.


Organosolv-Water Cosolvent Phase Separation on Cellulose and its Influence on the Physical Deconstruction of Cellulose: A Molecular Dynamics Analysis.

Smith MD, Cheng X, Petridis L, Mostofian B, Smith JC.

Sci Rep. 2017 Nov 3;7(1):14494. doi: 10.1038/s41598-017-15048-7.


High Human Immunodeficiency Virus Incidence and Prevalence and Associated Factors Among Adolescent Sexual Minority Males-3 Cities, 2015.

Balaji AB, An Q, Smith JC, Newcomb ME, Mustanski B, Prachand NG, Brady KA, Braunstein S, Paz-Bailey G; National HIV Behavioral Surveillance for Young Men Who Have Sex with Men (NHBS-YMSM) Study Group.

Clin Infect Dis. 2018 Mar 5;66(6):936-944. doi: 10.1093/cid/cix902.


Eating Well While Dining Out: Collaborating with Local Restaurants to Promote Heart Healthy Menu Items.

Thayer LM, Pimentel DC, Smith JC, Garcia BA, Lee Sylvester L, Kelly T, Johnston LF, Ammerman AS, Keyserling TC.

Am J Health Educ. 2017;48(1):11-21. doi: 10.1080/19325037.2016.1250688. Epub 2016 Dec 29.


Ensemble docking to difficult targets in early-stage drug discovery: Methodology and application to fibroblast growth factor 23.

Velazquez HA, Riccardi D, Xiao Z, Quarles LD, Yates CR, Baudry J, Smith JC.

Chem Biol Drug Des. 2018 Feb;91(2):491-504. doi: 10.1111/cbdd.13110. Epub 2017 Nov 3.


Dynamics of water bound to crystalline cellulose.

O'Neill H, Pingali SV, Petridis L, He J, Mamontov E, Hong L, Urban V, Evans B, Langan P, Smith JC, Davison BH.

Sci Rep. 2017 Sep 19;7(1):11840. doi: 10.1038/s41598-017-12035-w.


Dynamics at a Peptide-TiO2 Anatase (101) Interface.

Polimeni M, Petridis L, Smith JC, Arcangeli C.

J Phys Chem B. 2017 Sep 28;121(38):8869-8877. doi: 10.1021/acs.jpcb.7b04707. Epub 2017 Sep 14.


Modeling of the Passive Permeation of Mercury and Methylmercury Complexes Through a Bacterial Cytoplasmic Membrane.

Zhou J, Smith MD, Cooper SJ, Cheng X, Smith JC, Parks JM.

Environ Sci Technol. 2017 Sep 19;51(18):10595-10604. doi: 10.1021/acs.est.7b02204. Epub 2017 Aug 29.


Respiratory rhythm irregularity after carotid body denervation in rats.

Sheikhbahaei S, Gourine AV, Smith JC.

Respir Physiol Neurobiol. 2017 Dec;246:92-97. doi: 10.1016/j.resp.2017.08.001. Epub 2017 Aug 4.


Trimethylation Enhancement Using 13C-Diazomethane: Gas-Phase Charge Inversion of Modified Phospholipid Cations for Enhanced Structural Characterization.

Betancourt SK, Canez CR, Shields SWJ, Manthorpe JM, Smith JC, McLuckey SA.

Anal Chem. 2017 Sep 5;89(17):9452-9458. doi: 10.1021/acs.analchem.7b02271. Epub 2017 Aug 15.


Community detection in sequence similarity networks based on attribute clustering.

Chowdhary J, Löffler FE, Smith JC.

PLoS One. 2017 Jul 24;12(7):e0178650. doi: 10.1371/journal.pone.0178650. eCollection 2017.


Chk1 Inhibition of the Replication Factor Drf1 Guarantees Cell-Cycle Elongation at the Xenopus laevis Mid-blastula Transition.

Collart C, Smith JC, Zegerman P.

Dev Cell. 2017 Jul 10;42(1):82-96.e3. doi: 10.1016/j.devcel.2017.06.010.


Lateral Hypothalamic GABAergic Neurons Encode Reward Predictions that Are Relayed to the Ventral Tegmental Area to Regulate Learning.

Sharpe MJ, Marchant NJ, Whitaker LR, Richie CT, Zhang YJ, Campbell EJ, Koivula PP, Necarsulmer JC, Mejias-Aponte C, Morales M, Pickel J, Smith JC, Niv Y, Shaham Y, Harvey BK, Schoenbaum G.

Curr Biol. 2017 Jul 24;27(14):2089-2100.e5. doi: 10.1016/j.cub.2017.06.024. Epub 2017 Jul 6.


Identification and Structure-Activity Relationships of Novel Compounds that Potentiate the Activities of Antibiotics in Escherichia coli.

Haynes KM, Abdali N, Jhawar V, Zgurskaya HI, Parks JM, Green AT, Baudry J, Rybenkov VV, Smith JC, Walker JK.

J Med Chem. 2017 Jul 27;60(14):6205-6219. doi: 10.1021/acs.jmedchem.7b00453. Epub 2017 Jul 11.


Radiographic Outcomes of Shilla Growth Guidance System and Traditional Growing Rods Through Definitive Treatment.

Luhmann SJ, Smith JC, McClung A, McCullough FL, McCarthy RE, Thompson GH; Growing Spine Study Group.

Spine Deform. 2017 Jul;5(4):277-282. doi: 10.1016/j.jspd.2017.01.011.


Nasal Swab Screening for Staphylococcus aureus in Spinal Deformity Patients Treated With Growing Rods.

Luhmann SJ, Smith JC.

J Pediatr Orthop. 2017 Jun 13. doi: 10.1097/BPO.0000000000001015. [Epub ahead of print]


Recurrent Patellar Instability: Implications of Preoperative Patellar Crepitation on the Status of the Patellofemoral Articular Cartilage.

Luhmann SJ, Smith JC, Schootman M, Prasad N.

J Pediatr Orthop. 2017 Jun 13. doi: 10.1097/BPO.0000000000001017. [Epub ahead of print]


Potential Impact of the 2016 Consensus Definitions of Sepsis and Septic Shock on Future Sepsis Research.

Peake SL, Delaney A, Bailey M, Bellomo R; ARISE Investigators.

Ann Emerg Med. 2017 Oct;70(4):553-561.e1. doi: 10.1016/j.annemergmed.2017.04.007.


Corrigendum: SMCHD1 mutations associated with a rare muscular dystrophy can also cause isolated arhinia and Bosma arhinia microphthalmia syndrome.

Shaw ND, Brand H, Kupchinsky ZA, Bengani H, Plummer L, Jones TI, Erdin S, Williamson KA, Rainger J, Stortchevoi A, Samocha K, Currall BB, Dunican DS, Collins RL, Willer JR, Lek A, Lek M, Nassan M, Pereira S, Kammin T, Lucente D, Silva A, Seabra CM, Chiang C, An Y, Ansari M, Rainger JK, Joss S, Smith JC, Lippincott MF, Singh SS, Patel N, Jing JW, Law JR, Ferraro N, Verloes A, Rauch A, Steindl K, Zweier M, Scheer I, Sato D, Okamoto N, Jacobsen C, Tryggestad J, Chernausek S, Schimmenti LA, Brasseur B, Cesaretti C, García-Ortiz JE, Buitrago TP, Silva OP, Hoffman JD, Mühlbauer W, Ruprecht KW, Loeys BL, Shino M, Kaindl AM, Cho CH, Morton CC, Meehan RR, van Heyningen V, Liao EC, Balasubramanian R, Hall JE, Seminara SB, Macarthur D, Moore SA, Yoshiura KI, Gusella JF, Marsh JA, Graham JM Jr, Lin AE, Katsanis N, Jones PL, Crowley WF Jr, Davis EE, FitzPatrick DR, Talkowski ME.

Nat Genet. 2017 May 26;49(6):969. doi: 10.1038/ng0617-969c. No abstract available.


Protonation-state-Coupled Conformational Dynamics in Reaction Mechanisms of Channel and Pump Rhodopsins.

Bondar AN, Smith JC.

Photochem Photobiol. 2017 Nov;93(6):1336-1344. doi: 10.1111/php.12790. Epub 2017 Jul 25. Review.


Neutron structure of human carbonic anhydrase II in complex with methazolamide: mapping the solvent and hydrogen-bonding patterns of an effective clinical drug.

Aggarwal M, Kovalevsky AY, Velazquez H, Fisher SZ, Smith JC, McKenna R.

IUCrJ. 2016 Jul 22;3(Pt 5):319-325. doi: 10.1107/S2052252516010514. eCollection 2016 Sep 1.


Correction: Zebrafish atoh8 mutants do not recapitulate morpholino phenotypes.

Place ES, Smith JC.

PLoS One. 2017 Apr 6;12(4):e0175608. doi: 10.1371/journal.pone.0175608. eCollection 2017.


Near-infrared fluorescent protein iRFP713 as a reporter protein for optogenetic vectors, a transgenic Cre-reporter rat, and other neuronal studies.

Richie CT, Whitaker LR, Whitaker KW, Necarsulmer J, Baldwin HA, Zhang Y, Fortuno L, Hinkle JJ, Koivula P, Henderson MJ, Sun W, Wang K, Smith JC, Pickel J, Ji N, Hope BT, Harvey BK.

J Neurosci Methods. 2017 Jun 1;284:1-14. doi: 10.1016/j.jneumeth.2017.03.020. Epub 2017 Apr 2.


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