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Items: 1 to 50 of 121

1.

Modeling the dynamics and kinetics of HIV-1 Gag during viral assembly.

Tomasini MD, Johnson DS, Mincer JS, Simon SM.

PLoS One. 2018 Apr 20;13(4):e0196133. doi: 10.1371/journal.pone.0196133. eCollection 2018.

2.

Non coding RNA analysis in fibrolamellar hepatocellular carcinoma.

Farber BA, Lalazar G, Simon EP, Hammond WJ, Requena D, Bhanot UK, La Quaglia MP, Simon SM.

Oncotarget. 2017 Dec 15;9(12):10211-10227. doi: 10.18632/oncotarget.23325. eCollection 2018 Feb 13.

3.

Fibrolamellar Carcinoma: Recent Advances and Unresolved Questions on the Molecular Mechanisms.

Lalazar G, Simon SM.

Semin Liver Dis. 2018 Feb;38(1):51-59. doi: 10.1055/s-0037-1621710. Epub 2018 Feb 22.

PMID:
29471565
4.

Conformational Landscape of the PRKACA-DNAJB1 Chimeric Kinase, the Driver for Fibrolamellar Hepatocellular Carcinoma.

Tomasini MD, Wang Y, Karamafrooz A, Li G, Beuming T, Gao J, Taylor SS, Veglia G, Simon SM.

Sci Rep. 2018 Jan 15;8(1):720. doi: 10.1038/s41598-017-18956-w.

5.

Intracranial metastasis in fibrolamellar hepatocellular carcinoma.

Hammond WJ, Lalazar G, Saltsman JA, Farber BA, Danzer E, Sherpa TC, Banda CD, Andolina JR, Karimi S, Brennan CW, Torbenson MS, La Quaglia MP, Simon SM.

Pediatr Blood Cancer. 2018 Apr;65(4). doi: 10.1002/pbc.26919. Epub 2017 Dec 29.

PMID:
29286561
6.

Fibrolamellar carcinoma in the Carney complex: PRKAR1A loss instead of the classic DNAJB1-PRKACA fusion.

Graham RP, Lackner C, Terracciano L, González-Cantú Y, Maleszewski JJ, Greipp PT, Simon SM, Torbenson MS.

Hepatology. 2017 Dec 9. doi: 10.1002/hep.29719. [Epub ahead of print]

PMID:
29222914
7.

DNAJB1-PRKACA fusion kinase interacts with β-catenin and the liver regenerative response to drive fibrolamellar hepatocellular carcinoma.

Kastenhuber ER, Lalazar G, Houlihan SL, Tschaharganeh DF, Baslan T, Chen CC, Requena D, Tian S, Bosbach B, Wilkinson JE, Simon SM, Lowe SW.

Proc Natl Acad Sci U S A. 2017 Dec 12;114(50):13076-13084. doi: 10.1073/pnas.1716483114. Epub 2017 Nov 21.

8.

Recruitment of 7SL RNA to assembling HIV-1 virus-like particles.

Itano MS, Arnion H, Wolin SL, Simon SM.

Traffic. 2018 Jan;19(1):36-43. doi: 10.1111/tra.12536. Epub 2017 Dec 1.

PMID:
29044909
9.

Differential Regulation of Lipoprotein and Hepatitis C Virus Secretion by Rab1b.

Takacs CN, Andreo U, Dao Thi VL, Wu X, Gleason CE, Itano MS, Spitz-Becker GS, Belote RL, Hedin BR, Scull MA, Rice CM, Simon SM.

Cell Rep. 2017 Oct 10;21(2):431-441. doi: 10.1016/j.celrep.2017.09.053.

10.

A coarse-grained computational model of the nuclear pore complex predicts Phe-Gly nucleoporin dynamics.

Pulupa J, Rachh M, Tomasini MD, Mincer JS, Simon SM.

J Gen Physiol. 2017 Oct 2;149(10):951-966. doi: 10.1085/jgp.201711769. Epub 2017 Sep 8.

11.

Green fluorescent protein-tagged apolipoprotein E: A useful marker for the study of hepatic lipoprotein egress.

Takacs CN, Andreo U, Belote RL, Pulupa J, Scull MA, Gleason CE, Rice CM, Simon SM.

Traffic. 2017 Mar;18(3):192-204. doi: 10.1111/tra.12467. Epub 2017 Jan 31.

12.

Systematic effects from an ambient-temperature, continuously rotating half-wave plate.

Essinger-Hileman T, Kusaka A, Appel JW, Choi SK, Crowley K, Ho SP, Jarosik N, Page LA, Parker LP, Raghunathan S, Simon SM, Staggs ST, Visnjic K.

Rev Sci Instrum. 2016 Sep;87(9):094503.

PMID:
27782567
13.

Readily Accessible Multiplane Microscopy: 3D Tracking the HIV-1 Genome in Living Cells.

Itano MS, Bleck M, Johnson DS, Simon SM.

Traffic. 2016 Feb;17(2):179-86. doi: 10.1111/tra.12347. Epub 2015 Dec 14.

14.

Transcriptomic characterization of fibrolamellar hepatocellular carcinoma.

Simon EP, Freije CA, Farber BA, Lalazar G, Darcy DG, Honeyman JN, Chiaroni-Clarke R, Dill BD, Molina H, Bhanot UK, La Quaglia MP, Rosenberg BR, Simon SM.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):E5916-25. doi: 10.1073/pnas.1424894112. Epub 2015 Oct 21.

15.

Injured astrocytes are repaired by Synaptotagmin XI-regulated lysosome exocytosis.

Sreetama SC, Takano T, Nedergaard M, Simon SM, Jaiswal JK.

Cell Death Differ. 2016 Apr;23(4):596-607. doi: 10.1038/cdd.2015.124. Epub 2015 Oct 9.

16.

Real-time fluorescence imaging with 20 nm axial resolution.

Stabley DR, Oh T, Simon SM, Mattheyses AL, Salaita K.

Nat Commun. 2015 Sep 22;6:8307. doi: 10.1038/ncomms9307.

17.

APP intracellular domain-WAVE1 pathway reduces amyloid-β production.

Ceglia I, Reitz C, Gresack J, Ahn JH, Bustos V, Bleck M, Zhang X, Martin G, Simon SM, Nairn AC, Greengard P, Kim Y.

Nat Med. 2015 Sep;21(9):1054-9. doi: 10.1038/nm.3924. Epub 2015 Aug 17.

18.

Imaging Live Cells Using Quantum Dots.

Jaiswal JK, Simon SM.

Cold Spring Harb Protoc. 2015 Jul 1;2015(7):619-25. doi: 10.1101/pdb.top086322.

PMID:
26134913
19.

The genomic landscape of fibrolamellar hepatocellular carcinoma: whole genome sequencing of ten patients.

Darcy DG, Chiaroni-Clarke R, Murphy JM, Honeyman JN, Bhanot U, LaQuaglia MP, Simon SM.

Oncotarget. 2015 Jan 20;6(2):755-70.

20.

Translating evidence into population health improvement: strategies and barriers.

Woolf SH, Purnell JQ, Simon SM, Zimmerman EB, Camberos GJ, Haley A, Fields RP.

Annu Rev Public Health. 2015 Mar 18;36:463-82. doi: 10.1146/annurev-publhealth-082214-110901. Epub 2015 Jan 12. Review.

PMID:
25581146
21.

Temporal and spatial organization of ESCRT protein recruitment during HIV-1 budding.

Bleck M, Itano MS, Johnson DS, Thomas VK, North AJ, Bieniasz PD, Simon SM.

Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12211-6. doi: 10.1073/pnas.1321655111. Epub 2014 Aug 6.

22.

A review of rapid-onset opioids for breakthrough pain in patients with cancer.

Simon SM, Schwartzberg LS.

J Opioid Manag. 2014 May-Jun;10(3):207-15. doi: 10.5055/jom.2014.0209. Review.

PMID:
24944071
23.

Endogenous antibodies for tumor detection.

Rich BS, Honeyman JN, Darcy DG, Smith PT, Williams AR, Lim II, Johnson LK, Gönen M, Simon JS, LaQuaglia MP, Simon SM.

Sci Rep. 2014 May 30;4:5088. doi: 10.1038/srep05088.

24.

S100A11 is required for efficient plasma membrane repair and survival of invasive cancer cells.

Jaiswal JK, Lauritzen SP, Scheffer L, Sakaguchi M, Bunkenborg J, Simon SM, Kallunki T, Jäättelä M, Nylandsted J.

Nat Commun. 2014 May 8;5:3795. doi: 10.1038/ncomms4795.

25.

Polarization-controlled TIRFM with focal drift and spatial field intensity correction.

Johnson DS, Toledo-Crow R, Mattheyses AL, Simon SM.

Biophys J. 2014 Mar 4;106(5):1008-19. doi: 10.1016/j.bpj.2013.12.043.

26.

Modulation of cosmic microwave background polarization with a warm rapidly rotating half-wave plate on the Atacama B-Mode Search instrument.

Kusaka A, Essinger-Hileman T, Appel JW, Gallardo P, Irwin KD, Jarosik N, Nolta MR, Page LA, Parker LP, Raghunathan S, Sievers JL, Simon SM, Staggs ST, Visnjic K.

Rev Sci Instrum. 2014 Feb;85(2):024501. doi: 10.1063/1.4862058. Erratum in: Rev Sci Instrum. 2014 Mar;85(3):039901.

PMID:
24593374
27.

Detection of a recurrent DNAJB1-PRKACA chimeric transcript in fibrolamellar hepatocellular carcinoma.

Honeyman JN, Simon EP, Robine N, Chiaroni-Clarke R, Darcy DG, Lim II, Gleason CE, Murphy JM, Rosenberg BR, Teegan L, Takacs CN, Botero S, Belote R, Germer S, Emde AK, Vacic V, Bhanot U, LaQuaglia MP, Simon SM.

Science. 2014 Feb 28;343(6174):1010-4. doi: 10.1126/science.1249484.

28.

Heat shock factor 1 over-expression protects against exposure of hydrophobic residues on mutant SOD1 and early mortality in a mouse model of amyotrophic lateral sclerosis.

Lin PY, Simon SM, Koh WK, Folorunso O, Umbaugh CS, Pierce A.

Mol Neurodegener. 2013 Nov 21;8:43. doi: 10.1186/1750-1326-8-43.

29.

Belling the cat--tagging live cells with quantum dots.

Jaiswal JK, Simon SM.

Clin Chem. 2013 Jun;59(6):995-6. doi: 10.1373/clinchem.2012.199166. Epub 2013 Jan 28. No abstract available.

30.

Conserved spatial organization of FG domains in the nuclear pore complex.

Atkinson CE, Mattheyses AL, Kampmann M, Simon SM.

Biophys J. 2013 Jan 8;104(1):37-50. doi: 10.1016/j.bpj.2012.11.3823. Epub 2013 Jan 8.

31.

Dynamics of clathrin-mediated endocytosis and its requirement for organelle biogenesis in Dictyostelium.

Macro L, Jaiswal JK, Simon SM.

J Cell Sci. 2012 Dec 1;125(Pt 23):5721-32. doi: 10.1242/jcs.108837. Epub 2012 Sep 19.

32.

Visualizing HIV-1 assembly.

Jouvenet N, Simon SM, Bieniasz PD.

J Mol Biol. 2011 Jul 22;410(4):501-11. doi: 10.1016/j.jmb.2011.04.062. Review.

33.

Simulations of nuclear pore transport yield mechanistic insights and quantitative predictions.

Mincer JS, Simon SM.

Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):E351-8. doi: 10.1073/pnas.1104521108. Epub 2011 Jun 20.

34.

Imaging single endocytic events reveals diversity in clathrin, dynamin and vesicle dynamics.

Mattheyses AL, Atkinson CE, Simon SM.

Traffic. 2011 Oct;12(10):1394-406. doi: 10.1111/j.1600-0854.2011.01235.x. Epub 2011 Jul 19.

35.

Mapping the orientation of nuclear pore proteins in living cells with polarized fluorescence microscopy.

Kampmann M, Atkinson CE, Mattheyses AL, Simon SM.

Nat Struct Mol Biol. 2011 Jun;18(6):643-9. doi: 10.1038/nsmb.2056. Epub 2011 Apr 17.

36.

Dynamics of ESCRT protein recruitment during retroviral assembly.

Jouvenet N, Zhadina M, Bieniasz PD, Simon SM.

Nat Cell Biol. 2011 Apr;13(4):394-401. doi: 10.1038/ncb2207. Epub 2011 Mar 10.

37.

Imaging with total internal reflection fluorescence microscopy for the cell biologist.

Mattheyses AL, Simon SM, Rappoport JZ.

J Cell Sci. 2010 Nov 1;123(Pt 21):3621-8. doi: 10.1242/jcs.056218. Review.

38.

Fluorescence anisotropy reveals order and disorder of protein domains in the nuclear pore complex.

Mattheyses AL, Kampmann M, Atkinson CE, Simon SM.

Biophys J. 2010 Sep 22;99(6):1706-17. doi: 10.1016/j.bpj.2010.06.075.

39.

Visceral-locomotory pistoning in crawling caterpillars.

Simon MA, Woods WA Jr, Serebrenik YV, Simon SM, van Griethuijsen LI, Socha JJ, Lee WK, Trimmer BA.

Curr Biol. 2010 Aug 24;20(16):1458-63. doi: 10.1016/j.cub.2010.06.059. Epub 2010 Jul 22.

40.

Viral houseguests undertake interior redesign.

Jouvenet N, Simon SM.

Cell. 2010 May 28;141(5):754-6. doi: 10.1016/j.cell.2010.05.012.

41.

Determinism and divergence of apoptosis susceptibility in mammalian cells.

Bhola PD, Simon SM.

J Cell Sci. 2009 Dec 1;122(Pt 23):4296-302. doi: 10.1242/jcs.055590. Epub 2009 Nov 3.

42.

Imaging the interaction of HIV-1 genomes and Gag during assembly of individual viral particles.

Jouvenet N, Simon SM, Bieniasz PD.

Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):19114-9. doi: 10.1073/pnas.0907364106. Epub 2009 Oct 27.

43.

Spatial and temporal dynamics of mitochondrial membrane permeability waves during apoptosis.

Bhola PD, Mattheyses AL, Simon SM.

Biophys J. 2009 Oct 21;97(8):2222-31. doi: 10.1016/j.bpj.2009.07.056.

44.

Partial internal reflections on total internal reflection fluorescent microscopy.

Simon SM.

Trends Cell Biol. 2009 Nov;19(11):661-8. doi: 10.1016/j.tcb.2009.08.003. Epub 2009 Oct 7.

45.

Song: SOS (To the Tune of ABBA's "SOS").

Simon SM, Waters LS, Jarosz DF, Beuning PJ.

Biochem Mol Biol Educ. 2009 Sep;37(5):316. doi: 10.1002/bmb.20305. No abstract available.

46.

Exocytosis of post-Golgi vesicles is regulated by components of the endocytic machinery.

Jaiswal JK, Rivera VM, Simon SM.

Cell. 2009 Jun 26;137(7):1308-19. doi: 10.1016/j.cell.2009.04.064.

47.

Endocytic trafficking of activated EGFR is AP-2 dependent and occurs through preformed clathrin spots.

Rappoport JZ, Simon SM.

J Cell Sci. 2009 May 1;122(Pt 9):1301-5. doi: 10.1242/jcs.040030. Epub 2009 Apr 7.

48.

Golgi governance: the third way.

Simon SM.

Cell. 2008 Jun 13;133(6):951-3. doi: 10.1016/j.cell.2008.05.037.

49.

Dynamics of dynamin during clathrin mediated endocytosis in PC12 cells.

Rappoport JZ, Heyman KP, Kemal S, Simon SM.

PLoS One. 2008 Jun 11;3(6):e2416. doi: 10.1371/journal.pone.0002416.

50.

Imaging the biogenesis of individual HIV-1 virions in live cells.

Jouvenet N, Bieniasz PD, Simon SM.

Nature. 2008 Jul 10;454(7201):236-40. doi: 10.1038/nature06998. Epub 2008 May 25.

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