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The Problems with the Kappa Statistic as a Metric of Interobserver Agreement on Lesion Detection Using a Third-reader Approach When Locations Are Not Prespecified.

Shih JH, Greer MD, Turkbey B.

Acad Radiol. 2018 Mar 16. pii: S1076-6332(18)30069-2. doi: 10.1016/j.acra.2018.01.030. [Epub ahead of print]


Managing Environmental Liability: An Evaluation of Bonding Requirements for Oil and Gas Wells in the United States.

Ho J, Shih JS, Muehlenbachs L, Munnings C, Krupnick A.

Environ Sci Technol. 2018 Mar 13. doi: 10.1021/acs.est.7b06609. [Epub ahead of print]


Implementation and process analysis of pilot scale multi-phase anaerobic fermentation and digestion of faecal sludge in Ghana.

Shih J, Fanyin-Martin A, Taher E, Chandran K.

Gates Open Res. 2017 Nov 6;1:10. doi: 10.12688/gatesopenres.12754.1.


Modified Essex-Lopresti procedure with percutaneous calcaneoplasty for comminuted intra-articular calcaneal fractures: a retrospective case analysis.

Shih JT, Kuo CL, Yeh TT, Shen HC, Pan RY, Wu CC.

BMC Musculoskelet Disord. 2018 Mar 9;19(1):77. doi: 10.1186/s12891-018-1995-9.


Consensus of Leaders in Plastic Surgery: Identifying Procedural Competencies for Canadian Plastic Surgery Residency Training Using a Modified Delphi Technique.

Knox ADC, Shih JG, Warren RJ, Gilardino MS, Anastakis DJ.

Plast Reconstr Surg. 2018 Mar;141(3):417e-429e. doi: 10.1097/PRS.0000000000004132.


Best Response According to RECIST During First-line EGFR-TKI Treatment Predicts Survival in EGFR Mutation-positive Non-Small-cell Lung Cancer Patients.

Wu TH, Hsiue EH, Lee JH, Lin CC, Liao WY, Ho CC, Shih JY, Yu CJ, Yang JC.

Clin Lung Cancer. 2018 Feb 1. pii: S1525-7304(18)30017-2. doi: 10.1016/j.cllc.2018.01.005. [Epub ahead of print]


A Magnetic Resonance Imaging-Based Prediction Model for Prostate Biopsy Risk Stratification.

Mehralivand S, Shih JH, Rais-Bahrami S, Oto A, Bednarova S, Nix JW, Thomas JV, Gordetsky JB, Gaur S, Harmon SA, Siddiqui MM, Merino MJ, Parnes HL, Wood BJ, Pinto PA, Choyke PL, Turkbey B.

JAMA Oncol. 2018 Feb 22. doi: 10.1001/jamaoncol.2017.5667. [Epub ahead of print]


Management of acquired resistance to EGFR TKI-targeted therapy in advanced non-small cell lung cancer.

Wu SG, Shih JY.

Mol Cancer. 2018 Feb 19;17(1):38. doi: 10.1186/s12943-018-0777-1. Review.


Mammillary body changes and seizure outcome after laser interstitial thermal therapy of the mesial temporal lobe.

Grewal SS, Gupta V, Vibhute P, Shih JJ, Tatum WO, Wharen RE.

Epilepsy Res. 2018 Jan 31;141:19-22. doi: 10.1016/j.eplepsyres.2018.01.021. [Epub ahead of print]


The THIK and Thin of Microglia Dynamics.

Shih J, Dulla CG.

Neuron. 2018 Jan 17;97(2):253-255. doi: 10.1016/j.neuron.2018.01.002.


All over the map: An interobserver agreement study of tumor location based on the PI-RADSv2 sector map.

Greer MD, Shih JH, Barrett T, Bednarova S, Kabakus I, Law YM, Shebel H, Merino MJ, Wood BJ, Pinto PA, Choyke PL, Turkbey B.

J Magn Reson Imaging. 2018 Jan 17. doi: 10.1002/jmri.25948. [Epub ahead of print]


Multiparametric MRI for the detection of local recurrence of prostate cancer in the setting of biochemical recurrence after low dose rate brachytherapy.

Valle LF, Greer MD, Shih JH, Barrett T, Law YM, Rosenkrantz AB, Shebel H, Muthigi A, Su D, Merino MJ, Wood BJ, Pinto PA, Krauze AV, Kaushal A, Choyke PL, Türkbey B, Citrin DE.

Diagn Interv Radiol. 2018 Jan-Feb;24(1):46-53. doi: 10.5152/dir.2018.17285.


Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma.

Robertson AG, Shih J, Yau C, Gibb EA, Oba J, Mungall KL, Hess JM, Uzunangelov V, Walter V, Danilova L, Lichtenberg TM, Kucherlapati M, Kimes PK, Tang M, Penson A, Babur O, Akbani R, Bristow CA, Hoadley KA, Iype L, Chang MT; TCGA Research Network, Cherniack AD, Benz C, Mills GB, Verhaak RGW, Griewank KG, Felau I, Zenklusen JC, Gershenwald JE, Schoenfield L, Lazar AJ, Abdel-Rahman MH, Roman-Roman S, Stern MH, Cebulla CM, Williams MD, Jager MJ, Coupland SE, Esmaeli B, Kandoth C, Woodman SE.

Cancer Cell. 2018 Jan 8;33(1):151. doi: 10.1016/j.ccell.2017.12.013. No abstract available.


Response to Stephane Renaud et al.

Yang WC, Shih JY, Ho CC, Hsu FM.

Radiother Oncol. 2017 Dec 26. pii: S0167-8140(17)32752-4. doi: 10.1016/j.radonc.2017.12.001. [Epub ahead of print] No abstract available.


Outcomes in patients with non-small-cell lung cancer and acquired Thr790Met mutation treated with osimertinib: a genomic study.

Lin CC, Shih JY, Yu CJ, Ho CC, Liao WY, Lee JH, Tsai TH, Su KY, Hsieh MS, Chang YL, Bai YY, Huang DD, Thress KS, Yang JC.

Lancet Respir Med. 2018 Feb;6(2):107-116. doi: 10.1016/S2213-2600(17)30480-0. Epub 2017 Dec 14.


Interpersonal predictors of stress generation: Is there a super factor?

Shih JH, Barstead MG, Dianno N.

Br J Psychol. 2017 Dec 10. doi: 10.1111/bjop.12278. [Epub ahead of print]


Real-world experience of afatinib as a first-line therapy for advanced EGFR mutation-positive lung adenocarcinoma.

Liang SK, Hsieh MS, Lee MR, Keng LT, Ko JC, Shih JY.

Oncotarget. 2017 Jul 26;8(52):90430-90443. doi: 10.18632/oncotarget.19563. eCollection 2017 Oct 27.


Synthesis of azasilacyclopentenes and silanols via Huisgen cycloaddition-initiated C-H bond insertion cascades.

Shih JL, Jansone-Popova S, Huynh C, May JA.

Chem Sci. 2017 Oct 1;8(10):7132-7137. doi: 10.1039/c7sc03130k. Epub 2017 Sep 4.


Narrowband silicon waveguide Bragg reflector achieved by highly ordered graphene oxide gratings.

Hung YJ, Liang YC, Huang CW, Shih JF, Hu S, Yen TH, Kao CW, Chen CH.

Opt Lett. 2017 Nov 15;42(22):4768-4771. doi: 10.1364/OL.42.004768.


Indications and methodology for video-electroencephalographic studies in the epilepsy monitoring unit.

Shih JJ, Fountain NB, Herman ST, Bagic A, Lado F, Arnold S, Zupanc ML, Riker E, Labiner DM.

Epilepsia. 2018 Jan;59(1):27-36. doi: 10.1111/epi.13938. Epub 2017 Nov 10. Review.


Epidermal growth factor receptor mutation predicts favorable outcomes in non-small cell lung cancer patients with brain metastases treated with stereotactic radiosurgery.

Yang WC, Xiao F, Shih JY, Ho CC, Chen YF, Tseng HM, Chen KY, Liao WY, Yu CJ, Yang JC, Kuo SH, Cheng JC, Yang PC, Hsu FM.

Radiother Oncol. 2018 Feb;126(2):368-374. doi: 10.1016/j.radonc.2017.10.010. Epub 2017 Oct 27.


American College of Allergy, Asthma & Immunology Position Paper on the Use of Telemedicine for Allergists.

Elliott T, Shih J, Dinakar C, Portnoy J, Fineman S.

Ann Allergy Asthma Immunol. 2017 Dec;119(6):512-517. doi: 10.1016/j.anai.2017.09.052. Epub 2017 Nov 2.


The Effect of Functional Movement Training After Anterior Cruciate Ligament Reconstruction - A Randomized Controlled Trial.

Chao WC, Shih JC, Chen KC, Wu CL, Wu NY, Lo CS.

J Sport Rehabil. 2017 Oct 24:1-18. doi: 10.1123/jsr.2017-0022. [Epub ahead of print]


Patient-derived xenografts undergo mouse-specific tumor evolution.

Ben-David U, Ha G, Tseng YY, Greenwald NF, Oh C, Shih J, McFarland JM, Wong B, Boehm JS, Beroukhim R, Golub TR.

Nat Genet. 2017 Nov;49(11):1567-1575. doi: 10.1038/ng.3967. Epub 2017 Oct 9.


Astrocyte-elevated gene-1 confers resistance to pemetrexed in non-small cell lung cancer by upregulating thymidylate synthase expression.

Chen CY, Chen YY, Chen JJW, Chen KY, Ho CC, Shih JY, Chang YL, Yu CJ, Yang PC.

Oncotarget. 2017 Jun 28;8(37):61901-61916. doi: 10.18632/oncotarget.18717. eCollection 2017 Sep 22.


Somatic Superenhancer Duplications and Hotspot Mutations Lead to Oncogenic Activation of the KLF5 Transcription Factor.

Zhang X, Choi PS, Francis JM, Gao GF, Campbell JD, Ramachandran A, Mitsuishi Y, Ha G, Shih J, Vazquez F, Tsherniak A, Taylor AM, Zhou J, Wu Z, Berger AC, Giannakis M, Hahn WC, Cherniack AD, Meyerson M.

Cancer Discov. 2018 Jan;8(1):108-125. doi: 10.1158/2159-8290.CD-17-0532. Epub 2017 Sep 29.


Genomic Activation of PPARG Reveals a Candidate Therapeutic Axis in Bladder Cancer.

Goldstein JT, Berger AC, Shih J, Duke FF, Furst L, Kwiatkowski DJ, Cherniack AD, Meyerson M, Strathdee CA.

Cancer Res. 2017 Dec 15;77(24):6987-6998. doi: 10.1158/0008-5472.CAN-17-1701. Epub 2017 Sep 18.


Clinical impact of PSMA-based 18F-DCFBC PET/CT imaging in patients with biochemically recurrent prostate cancer after primary local therapy.

Mena E, Lindenberg ML, Shih JH, Adler S, Harmon S, Bergvall E, Citrin D, Dahut W, Ton AT, McKinney Y, Weaver J, Eclarinal P, Forest A, Afari G, Bhattacharyya S, Mease RC, Merino MJ, Pinto P, Wood BJ, Jacobs P, Pomper MG, Choyke PL, Turkbey B.

Eur J Nucl Med Mol Imaging. 2018 Jan;45(1):4-11. doi: 10.1007/s00259-017-3818-x. Epub 2017 Sep 11.


Exercise intervention attenuates hyperhomocysteinemia-induced aortic endothelial oxidative injury by regulating SIRT1 through mitigating NADPH oxidase/LOX-1 signaling.

Chan SH, Hung CH, Shih JY, Chu PM, Cheng YH, Lin HC, Hsieh PL, Tsai KL.

Redox Biol. 2018 Apr;14:116-125. doi: 10.1016/j.redox.2017.08.016. Epub 2017 Aug 24.


Outcomes of cancer therapy administered to treatment-naïve lung cancer patients in the intensive care unit.

Chen YF, Lin JW, Ho CC, Yang CY, Chang CH, Huang TM, Chen CY, Chen KY, Shih JY, Yu CJ.

J Cancer. 2017 Jul 5;8(11):1995-2003. doi: 10.7150/jca.18178. eCollection 2017.


Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma.

Robertson AG, Shih J, Yau C, Gibb EA, Oba J, Mungall KL, Hess JM, Uzunangelov V, Walter V, Danilova L, Lichtenberg TM, Kucherlapati M, Kimes PK, Tang M, Penson A, Babur O, Akbani R, Bristow CA, Hoadley KA, Iype L, Chang MT; TCGA Research Network, Cherniack AD, Benz C, Mills GB, Verhaak RGW, Griewank KG, Felau I, Zenklusen JC, Gershenwald JE, Schoenfield L, Lazar AJ, Abdel-Rahman MH, Roman-Roman S, Stern MH, Cebulla CM, Williams MD, Jager MJ, Coupland SE, Esmaeli B, Kandoth C, Woodman SE.

Cancer Cell. 2017 Aug 14;32(2):204-220.e15. doi: 10.1016/j.ccell.2017.07.003. Erratum in: Cancer Cell. 2018 Jan 8;33(1):151.


Transition from intravenous to enteral ketamine for treatment of nonconvulsive status epilepticus.

Pizzi MA, Kamireddi P, Tatum WO, Shih JJ, Jackson DA, Freeman WD.

J Intensive Care. 2017 Aug 8;5:54. doi: 10.1186/s40560-017-0248-6. eCollection 2017.


Long non-coding RNA and tumor hypoxia: new players ushered toward an old arena.

Shih JW, Kung HJ.

J Biomed Sci. 2017 Aug 8;24(1):53. doi: 10.1186/s12929-017-0358-4. Review.


Validation of the Dominant Sequence Paradigm and Role of Dynamic Contrast-enhanced Imaging in PI-RADS Version 2.

Greer MD, Shih JH, Lay N, Barrett T, Kayat Bittencourt L, Borofsky S, Kabakus IM, Law YM, Marko J, Shebel H, Mertan FV, Merino MJ, Wood BJ, Pinto PA, Summers RM, Choyke PL, Turkbey B.

Radiology. 2017 Dec;285(3):859-869. doi: 10.1148/radiol.2017161316. Epub 2017 Jul 19.


Monoamine oxidase A is highly expressed in classical Hodgkin lymphoma.

Li PC, Siddiqi IN, Mottok A, Loo EY, Wu CH, Cozen W, Steidl C, Shih JC.

J Pathol. 2017 Oct;243(2):220-229. doi: 10.1002/path.4944. Epub 2017 Sep 5.


Comparison of Computed Tomography Articular Surface Geometry of Male Versus Female Thumb Carpometacarpal Joints.

Shih JG, Mainprize JG, Binhammer PA.

Hand (N Y). 2018 Jan;13(1):33-39. doi: 10.1177/1558944716688528. Epub 2017 Feb 2.


Lung adenocarcinoma patients of young age have lower EGFR mutation rate and poorer efficacy of EGFR tyrosine kinase inhibitors.

Wu SG, Chang YL, Yu CJ, Yang PC, Shih JY.

ERJ Open Res. 2017 Jul 12;3(3). pii: 00092-2016. doi: 10.1183/23120541.00092-2016. eCollection 2017 Jul.


Extracorporeal membrane oxygenation application in post-partum hemorrhage patients: Is post-partum hemorrhage contraindicated?

Huang KY, Li YP, Lin SY, Shih JC, Chen YS, Lee CN.

J Obstet Gynaecol Res. 2017 Oct;43(10):1649-1654. doi: 10.1111/jog.13426. Epub 2017 Jul 14.


Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles.

Farshidfar F, Zheng S, Gingras MC, Newton Y, Shih J, Robertson AG, Hinoue T, Hoadley KA, Gibb EA, Roszik J, Covington KR, Wu CC, Shinbrot E, Stransky N, Hegde A, Yang JD, Reznik E, Sadeghi S, Pedamallu CS, Ojesina AI, Hess JM, Auman JT, Rhie SK, Bowlby R, Borad MJ; Cancer Genome Atlas Network, Zhu AX, Stuart JM, Sander C, Akbani R, Cherniack AD, Deshpande V, Mounajjed T, Foo WC, Torbenson MS, Kleiner DE, Laird PW, Wheeler DA, McRee AJ, Bathe OF, Andersen JB, Bardeesy N, Roberts LR, Kwong LN.

Cell Rep. 2017 Jun 27;19(13):2878-2880. doi: 10.1016/j.celrep.2017.06.008. No abstract available.


The genomic landscape of tuberous sclerosis complex.

Martin KR, Zhou W, Bowman MJ, Shih J, Au KS, Dittenhafer-Reed KE, Sisson KA, Koeman J, Weisenberger DJ, Cottingham SL, DeRoos ST, Devinsky O, Winn ME, Cherniack AD, Shen H, Northrup H, Krueger DA, MacKeigan JP.

Nat Commun. 2017 Jun 15;8:15816. doi: 10.1038/ncomms15816.


Long noncoding RNA LncHIFCAR/MIR31HG is a HIF-1α co-activator driving oral cancer progression.

Shih JW, Chiang WF, Wu ATH, Wu MH, Wang LY, Yu YL, Hung YW, Wang WC, Chu CY, Hung CL, Changou CA, Yen Y, Kung HJ.

Nat Commun. 2017 Jun 22;8:15874. doi: 10.1038/ncomms15874.


Effective Synthesis of Highly Oxidized Graphene Oxide That Enables Wafer-scale Nanopatterning: Preformed Acidic Oxidizing Medium Approach.

Chen CH, Hu S, Shih JF, Yang CY, Luo YW, Jhang RH, Chiang CM, Hung YJ.

Sci Rep. 2017 Jun 20;7(1):3908. doi: 10.1038/s41598-017-04139-0.


Surgical Correction for a Neonate With Ebstein's Anomaly Associated With Tetralogy of Fallot.

Wei LY, Shih JC, Wu ET, Chen SJ, Chen YS, Huang SC.

Ann Thorac Surg. 2017 Jul;104(1):e79-e81. doi: 10.1016/j.athoracsur.2017.01.082.


Coexistence of the BRAF Mutation and EGFR Exon 20 Insertion in a Patient with Lung Adenocarcinoma.

Chang LC, Chen KY, Shih JY, Yu CJ, Hsieh MS.

J Thorac Oncol. 2017 Jul;12(7):e94-e95. doi: 10.1016/j.jtho.2017.03.004. No abstract available.


Upregulation of microRNA-137 expression by Slug promotes tumor invasion and metastasis of non-small cell lung cancer cells through suppression of TFAP2C.

Chang TH, Tsai MF, Gow CH, Wu SG, Liu YN, Chang YL, Yu SL, Tsai HC, Lin SW, Chen YW, Kuo PY, Yang PC, Shih JY.

Cancer Lett. 2017 Aug 28;402:190-202. doi: 10.1016/j.canlet.2017.06.002. Epub 2017 Jun 10.


Expression of Notch Gene and Its Impact on Survival of Patients with Resectable Non-small Cell Lung Cancer.

Chen CY, Chen YY, Hsieh MS, Ho CC, Chen KY, Shih JY, Yu CJ.

J Cancer. 2017 May 11;8(7):1292-1300. doi: 10.7150/jca.17741. eCollection 2017.


SIRT1 inhibition causes oxidative stress and inflammation in patients with coronary artery disease.

Chan SH, Hung CH, Shih JY, Chu PM, Cheng YH, Lin HC, Tsai KL.

Redox Biol. 2017 Oct;13:301-309. doi: 10.1016/j.redox.2017.05.027. Epub 2017 Jun 2.


Complete resolution of hydrops by placement of double basket catheter in a case of macrocystic type multilocular pulmonary sequestration.

Wu WJ, Shih JC, Sago H, Chen M.

Taiwan J Obstet Gynecol. 2017 Jun;56(3):402-405. doi: 10.1016/j.tjog.2017.04.027.


Transcatheter Tricuspid Valve Replacement in Orthotopic Heart Transplant.

Hafiz AM, Shih J, Kakouros N.

J Invasive Cardiol. 2017 Jun;29(6):E75-E76.


Galangin ameliorates cisplatin-induced nephrotoxicity by attenuating oxidative stress, inflammation and cell death in mice through inhibition of ERK and NF-kappaB signaling.

Huang YC, Tsai MS, Hsieh PC, Shih JH, Wang TS, Wang YC, Lin TH, Wang SH.

Toxicol Appl Pharmacol. 2017 Aug 15;329:128-139. doi: 10.1016/j.taap.2017.05.034. Epub 2017 May 27.


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