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Items: 1 to 50 of 98

1.

Generative Cell Specification Requires Transcription Factors Evolutionarily Conserved in Land Plants.

Yamaoka S, Nishihama R, Yoshitake Y, Ishida S, Inoue K, Saito M, Okahashi K, Bao H, Nishida H, Yamaguchi K, Shigenobu S, Ishizaki K, Yamato KT, Kohchi T.

Curr Biol. 2018 Feb 5;28(3):479-486.e5. doi: 10.1016/j.cub.2017.12.053. Epub 2018 Jan 25.

PMID:
29395928
2.

Physcomitrella MADS-box genes regulate water supply and sperm movement for fertilization.

Koshimizu S, Kofuji R, Sasaki-Sekimoto Y, Kikkawa M, Shimojima M, Ohta H, Shigenobu S, Kabeya Y, Hiwatashi Y, Tamada Y, Murata T, Hasebe M.

Nat Plants. 2018 Jan;4(1):36-45. doi: 10.1038/s41477-017-0082-9. Epub 2018 Jan 3.

PMID:
29296005
3.

Transcriptome characterization of male accessory glands in ants to identify molecules involved in their reproductive success.

Gotoh A, Shigenobu S, Yamaguchi K, Kobayashi S, Ito F, Tsuji K.

Insect Mol Biol. 2017 Dec 11. doi: 10.1111/imb.12364. [Epub ahead of print]

PMID:
29226989
4.

RNG105/caprin1, an RNA granule protein for dendritic mRNA localization, is essential for long-term memory formation.

Nakayama K, Ohashi R, Shinoda Y, Yamazaki M, Abe M, Fujikawa A, Shigenobu S, Futatsugi A, Noda M, Mikoshiba K, Furuichi T, Sakimura K, Shiina N.

Elife. 2017 Nov 21;6. pii: e29677. doi: 10.7554/eLife.29677.

5.

Transcripts immunoprecipitated with Sxl protein in primordial germ cells of Drosophila embryos.

Ota R, Morita S, Sato M, Shigenobu S, Hayashi M, Kobayashi S.

Dev Growth Differ. 2017 Dec;59(9):713-723. doi: 10.1111/dgd.12408. Epub 2017 Nov 10.

PMID:
29124738
6.

Small genome symbiont underlies cuticle hardness in beetles.

Anbutsu H, Moriyama M, Nikoh N, Hosokawa T, Futahashi R, Tanahashi M, Meng XY, Kuriwada T, Mori N, Oshima K, Hattori M, Fujie M, Satoh N, Maeda T, Shigenobu S, Koga R, Fukatsu T.

Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):E8382-E8391. doi: 10.1073/pnas.1712857114. Epub 2017 Sep 18.

7.

Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory.

Fukushima K, Fang X, Alvarez-Ponce D, Cai H, Carretero-Paulet L, Chen C, Chang TH, Farr KM, Fujita T, Hiwatashi Y, Hoshi Y, Imai T, Kasahara M, Librado P, Mao L, Mori H, Nishiyama T, Nozawa M, Pálfalvi G, Pollard ST, Rozas J, Sánchez-Gracia A, Sankoff D, Shibata TF, Shigenobu S, Sumikawa N, Uzawa T, Xie M, Zheng C, Pollock DD, Albert VA, Li S, Hasebe M.

Nat Ecol Evol. 2017 Feb 6;1(3):59. doi: 10.1038/s41559-016-0059.

PMID:
28812732
8.

Transcriptome profiling of the spermatheca identifies genes potentially involved in the long-term sperm storage of ant queens.

Gotoh A, Shigenobu S, Yamaguchi K, Kobayashi S, Ito F, Tsuji K.

Sci Rep. 2017 Jul 20;7(1):5972. doi: 10.1038/s41598-017-05818-8.

9.

Novel Stress-Inducible Antisense RNAs of Protein-Coding Loci Are Synthesized by RNA-Dependent RNA Polymerase.

Matsui A, Iida K, Tanaka M, Yamaguchi K, Mizuhashi K, Kim JM, Takahashi S, Kobayashi N, Shigenobu S, Shinozaki K, Seki M.

Plant Physiol. 2017 Sep;175(1):457-472. doi: 10.1104/pp.17.00787. Epub 2017 Jul 14.

10.

Metabolic Integration of Bacterial Endosymbionts through Antimicrobial Peptides.

Mergaert P, Kikuchi Y, Shigenobu S, Nowack ECM.

Trends Microbiol. 2017 Sep;25(9):703-712. doi: 10.1016/j.tim.2017.04.007. Epub 2017 May 23. Review.

PMID:
28549825
11.

ChIP-seq analysis of genomic binding regions of five major transcription factors highlights a central role for ZIC2 in the mouse epiblast stem cell gene regulatory network.

Matsuda K, Mikami T, Oki S, Iida H, Andrabi M, Boss JM, Yamaguchi K, Shigenobu S, Kondoh H.

Development. 2017 Jun 1;144(11):1948-1958. doi: 10.1242/dev.143479. Epub 2017 Apr 28.

12.

Role of LOTR1 in Nutrient Transport through Organization of Spatial Distribution of Root Endodermal Barriers.

Li B, Kamiya T, Kalmbach L, Yamagami M, Yamaguchi K, Shigenobu S, Sawa S, Danku JM, Salt DE, Geldner N, Fujiwara T.

Curr Biol. 2017 Mar 6;27(5):758-765. doi: 10.1016/j.cub.2017.01.030. Epub 2017 Feb 23.

PMID:
28238658
13.

Comparative analysis of the brain transcriptome in a hyper-aggressive fruit fly, Drosophila prolongata.

Kudo A, Shigenobu S, Kadota K, Nozawa M, Shibata TF, Ishikawa Y, Matsuo T.

Insect Biochem Mol Biol. 2017 Mar;82:11-20. doi: 10.1016/j.ibmb.2017.01.006. Epub 2017 Jan 20.

PMID:
28115271
14.

Comparison of green and albino individuals of the partially mycoheterotrophic orchid Epipactis helleborine on molecular identities of mycorrhizal fungi, nutritional modes and gene expression in mycorrhizal roots.

Suetsugu K, Yamato M, Miura C, Yamaguchi K, Takahashi K, Ida Y, Shigenobu S, Kaminaka H.

Mol Ecol. 2017 Mar;26(6):1652-1669. doi: 10.1111/mec.14021. Epub 2017 Feb 6.

PMID:
28099773
15.

Conserved role of Ovo in germline development in mouse and Drosophila.

Hayashi M, Shinozuka Y, Shigenobu S, Sato M, Sugimoto M, Ito S, Abe K, Kobayashi S.

Sci Rep. 2017 Jan 6;7:40056. doi: 10.1038/srep40056.

16.

Expression of the alaE gene is positively regulated by the global regulator Lrp in response to intracellular accumulation of l-alanine in Escherichia coli.

Ihara K, Sato K, Hori H, Makino Y, Shigenobu S, Ando T, Isogai E, Yoneyama H.

J Biosci Bioeng. 2017 Apr;123(4):444-450. doi: 10.1016/j.jbiosc.2016.11.015. Epub 2017 Jan 3.

PMID:
28057466
17.

MYB transcription factor gene involved in sex determination in Asparagus officinalis.

Murase K, Shigenobu S, Fujii S, Ueda K, Murata T, Sakamoto A, Wada Y, Yamaguchi K, Osakabe Y, Osakabe K, Kanno A, Ozaki Y, Takayama S.

Genes Cells. 2017 Jan;22(1):115-123. doi: 10.1111/gtc.12453. Epub 2016 Nov 21.

18.

APOBEC3A associates with human papillomavirus genome integration in oropharyngeal cancers.

Kondo S, Wakae K, Wakisaka N, Nakanishi Y, Ishikawa K, Komori T, Moriyama-Kita M, Endo K, Murono S, Wang Z, Kitamura K, Nishiyama T, Yamaguchi K, Shigenobu S, Muramatsu M, Yoshizaki T.

Oncogene. 2017 Mar 23;36(12):1687-1697. doi: 10.1038/onc.2016.335. Epub 2016 Oct 3.

PMID:
27694899
19.

Draft Genome Sequence of Helicobacter suis Strain SNTW101, Isolated from a Japanese Patient with Nodular Gastritis.

Matsui H, Takahashi T, Murayama SY, Uchiyama I, Yamaguchi K, Shigenobu S, Suzuki M, Rimbara E, Shibayama K, Øverby A, Nakamura M.

Genome Announc. 2016 Sep 8;4(5). pii: e00934-16. doi: 10.1128/genomeA.00934-16.

20.

Heterotrimeric G proteins control stem cell proliferation through CLAVATA signaling in Arabidopsis.

Ishida T, Tabata R, Yamada M, Aida M, Mitsumasu K, Fujiwara M, Yamaguchi K, Shigenobu S, Higuchi M, Tsuji H, Shimamoto K, Hasebe M, Fukuda H, Sawa S.

EMBO Rep. 2016 Aug;17(8):1236. doi: 10.15252/embr.201678010. No abstract available.

21.

Identification of the agg1 mutation responsible for negative phototaxis in a "wild-type" strain of Chlamydomonas reinhardtii.

Ide T, Mochiji S, Ueki N, Yamaguchi K, Shigenobu S, Hirono M, Wakabayashi KI.

Biochem Biophys Rep. 2016 Jul 20;7:379-385. doi: 10.1016/j.bbrep.2016.07.016. eCollection 2016 Sep.

22.

Polyamine Resistance Is Increased by Mutations in a Nitrate Transporter Gene NRT1.3 (AtNPF6.4) in Arabidopsis thaliana.

Tong W, Imai A, Tabata R, Shigenobu S, Yamaguchi K, Yamada M, Hasebe M, Sawa S, Motose H, Takahashi T.

Front Plant Sci. 2016 Jun 13;7:834. doi: 10.3389/fpls.2016.00834. eCollection 2016.

23.

Eyespot-dependent determination of the phototactic sign in Chlamydomonas reinhardtii.

Ueki N, Ide T, Mochiji S, Kobayashi Y, Tokutsu R, Ohnishi N, Yamaguchi K, Shigenobu S, Tanaka K, Minagawa J, Hisabori T, Hirono M, Wakabayashi K.

Proc Natl Acad Sci U S A. 2016 May 10;113(19):5299-304. doi: 10.1073/pnas.1525538113. Epub 2016 Apr 27.

24.

Differentially expressed genes associated with adaptation to different thermal environments in three sympatric Cuban Anolis lizards.

Akashi HD, Cádiz Díaz A, Shigenobu S, Makino T, Kawata M.

Mol Ecol. 2016 May;25(10):2273-85. doi: 10.1111/mec.13625. Epub 2016 May 14.

PMID:
27027506
25.

Expression of genes involved in the uptake of inorganic carbon in the gill of a deep-sea vesicomyid clam harboring intracellular thioautotrophic bacteria.

Hongo Y, Ikuta T, Takaki Y, Shimamura S, Shigenobu S, Maruyama T, Yoshida T.

Gene. 2016 Jul 10;585(2):228-40. doi: 10.1016/j.gene.2016.03.033. Epub 2016 Mar 23.

PMID:
27016297
26.

Experimental Approach Reveals the Role of alx1 in the Evolution of the Echinoderm Larval Skeleton.

Koga H, Fujitani H, Morino Y, Miyamoto N, Tsuchimoto J, Shibata TF, Nozawa M, Shigenobu S, Ogura A, Tachibana K, Kiyomoto M, Amemiya S, Wada H.

PLoS One. 2016 Feb 11;11(2):e0149067. doi: 10.1371/journal.pone.0149067. eCollection 2016.

27.

Transcriptional Framework of Male Gametogenesis in the Liverwort Marchantia polymorpha L.

Higo A, Niwa M, Yamato KT, Yamada L, Sawada H, Sakamoto T, Kurata T, Shirakawa M, Endo M, Shigenobu S, Yamaguchi K, Ishizaki K, Nishihama R, Kohchi T, Araki T.

Plant Cell Physiol. 2016 Feb;57(2):325-38. doi: 10.1093/pcp/pcw005. Epub 2016 Feb 8.

PMID:
26858289
28.

RNA-seq analysis of the gonadal transcriptome during Alligator mississippiensis temperature-dependent sex determination and differentiation.

Yatsu R, Miyagawa S, Kohno S, Parrott BB, Yamaguchi K, Ogino Y, Miyakawa H, Lowers RH, Shigenobu S, Guillette LJ Jr, Iguchi T.

BMC Genomics. 2016 Jan 25;17:77. doi: 10.1186/s12864-016-2396-9.

29.

The Arabidopsis Mg Transporter, MRS2-4, is Essential for Mg Homeostasis Under Both Low and High Mg Conditions.

Oda K, Kamiya T, Shikanai Y, Shigenobu S, Yamaguchi K, Fujiwara T.

Plant Cell Physiol. 2016 Apr;57(4):754-63. doi: 10.1093/pcp/pcv196. Epub 2016 Jan 8.

PMID:
26748081
30.

Improvement of barley genome annotations by deciphering the Haruna Nijo genome.

Sato K, Tanaka T, Shigenobu S, Motoi Y, Wu J, Itoh T.

DNA Res. 2016 Feb;23(1):21-8. doi: 10.1093/dnares/dsv033. Epub 2015 Nov 29.

31.

Detection of hypermutated human papillomavirus type 16 genome by Next-Generation Sequencing.

Wakae K, Aoyama S, Wang Z, Kitamura K, Liu G, Monjurul AM, Koura M, Imayasu M, Sakamoto N, Nakamura M, Kyo S, Kondo S, Fujiwara H, Yoshizaki T, Kukimoto I, Yamaguchi K, Shigenobu S, Nishiyama T, Muramatsu M.

Virology. 2015 Nov;485:460-6. doi: 10.1016/j.virol.2015.08.017. Epub 2015 Sep 7.

32.

Antennal RNA-sequencing analysis reveals evolutionary aspects of chemosensory proteins in the carpenter ant, Camponotus japonicus.

Hojo MK, Ishii K, Sakura M, Yamaguchi K, Shigenobu S, Ozaki M.

Sci Rep. 2015 Aug 27;5:13541. doi: 10.1038/srep13541.

33.

Gene Body CG and CHG Methylation and Suppression of Centromeric CHH Methylation are Mediated by DECREASE IN DNA METHYLATION1 in Rice.

Numa H, Yamaguchi K, Shigenobu S, Habu Y.

Mol Plant. 2015 Oct 5;8(10):1560-2. doi: 10.1016/j.molp.2015.08.002. Epub 2015 Aug 12. No abstract available.

34.

BAM 1 and RECEPTOR-LIKE PROTEIN KINASE 2 constitute a signaling pathway and modulate CLE peptide-triggered growth inhibition in Arabidopsis root.

Shimizu N, Ishida T, Yamada M, Shigenobu S, Tabata R, Kinoshita A, Yamaguchi K, Hasebe M, Mitsumasu K, Sawa S.

New Phytol. 2015 Dec;208(4):1104-13. doi: 10.1111/nph.13520. Epub 2015 Jun 17.

35.

Antiproliferative activity of O4-benzo[c]phenanthridine alkaloids against HCT-116 and HL-60 tumor cells.

Hatae N, Fujita E, Shigenobu S, Shimoyama S, Ishihara Y, Kurata Y, Choshi T, Nishiyama T, Okada C, Hibino S.

Bioorg Med Chem Lett. 2015 Jul 15;25(14):2749-52. doi: 10.1016/j.bmcl.2015.05.031. Epub 2015 May 19.

PMID:
26026362
36.

An Arabidopsis thaliana copper-sensitive mutant suggests a role of phytosulfokine in ethylene production.

Wu T, Kamiya T, Yumoto H, Sotta N, Katsushi Y, Shigenobu S, Matsubayashi Y, Fujiwara T.

J Exp Bot. 2015 Jul;66(13):3657-67. doi: 10.1093/jxb/erv105. Epub 2015 Apr 23.

37.

NMDA receptor activation upstream of methyl farnesoate signaling for short day-induced male offspring production in the water flea, Daphnia pulex.

Toyota K, Miyakawa H, Yamaguchi K, Shigenobu S, Ogino Y, Tatarazako N, Miyagawa S, Iguchi T.

BMC Genomics. 2015 Mar 14;16:186. doi: 10.1186/s12864-015-1392-9.

38.

Mutations in Plastidial 5-Aminolevulinic Acid Biosynthesis Genes Suppress a Pleiotropic Defect in Shoot Development of a Mitochondrial GABA Shunt Mutant in Arabidopsis.

Toyokura K, Yamaguchi K, Shigenobu S, Fukaki H, Tatematsu K, Okada K.

Plant Cell Physiol. 2015 Jun;56(6):1229-38. doi: 10.1093/pcp/pcv050. Epub 2015 Apr 2.

PMID:
25840087
39.

A plant U-box protein, PUB4, regulates asymmetric cell division and cell proliferation in the root meristem.

Kinoshita A, ten Hove CA, Tabata R, Yamada M, Shimizu N, Ishida T, Yamaguchi K, Shigenobu S, Takebayashi Y, Iuchi S, Kobayashi M, Kurata T, Wada T, Seo M, Hasebe M, Blilou I, Fukuda H, Scheres B, Heidstra R, Kamiya Y, Sawa S.

Development. 2015 Feb 1;142(3):444-53. doi: 10.1242/dev.113167.

40.

Primary squamous cell carcinoma of the duodenum effectively treated with TS-1: a case report.

Fujita T, Nasu Y, Hamamoto H, Miyata F, Oshige A, Shigenobu S, Kanmura S, Numata M, Aozaki S, Ido A.

Nihon Shokakibyo Gakkai Zasshi. 2014 Dec;111(12):2311-8. Review. Japanese.

PMID:
25482907
41.

The evolutionary history of termites as inferred from 66 mitochondrial genomes.

Bourguignon T, Lo N, Cameron SL, Šobotník J, Hayashi Y, Shigenobu S, Watanabe D, Roisin Y, Miura T, Evans TA.

Mol Biol Evol. 2015 Feb;32(2):406-21. doi: 10.1093/molbev/msu308. Epub 2014 Nov 10.

PMID:
25389205
42.

Symbiont-supplemented maternal investment underpinning host's ecological adaptation.

Kaiwa N, Hosokawa T, Nikoh N, Tanahashi M, Moriyama M, Meng XY, Maeda T, Yamaguchi K, Shigenobu S, Ito M, Fukatsu T.

Curr Biol. 2014 Oct 20;24(20):2465-70. doi: 10.1016/j.cub.2014.08.065. Epub 2014 Sep 25.

43.

Heterotrimeric G proteins control stem cell proliferation through CLAVATA signaling in Arabidopsis.

Ishida T, Tabata R, Yamada M, Aida M, Mitsumasu K, Fujiwara M, Yamaguchi K, Shigenobu S, Higuchi M, Tsuji H, Shimamoto K, Hasebe M, Fukuda H, Sawa S.

EMBO Rep. 2014 Nov;15(11):1202-9. doi: 10.15252/embr.201438660. Epub 2014 Sep 26. Erratum in: EMBO Rep. 2016 Aug;17 (8):1236.

44.

Cockroach GABAB receptor subtypes: molecular characterization, pharmacological properties and tissue distribution.

Blankenburg S, Balfanz S, Hayashi Y, Shigenobu S, Miura T, Baumann O, Baumann A, Blenau W.

Neuropharmacology. 2015 Jan;88:134-44. doi: 10.1016/j.neuropharm.2014.08.022. Epub 2014 Sep 19.

PMID:
25242738
45.

Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge.

Gusev O, Suetsugu Y, Cornette R, Kawashima T, Logacheva MD, Kondrashov AS, Penin AA, Hatanaka R, Kikuta S, Shimura S, Kanamori H, Katayose Y, Matsumoto T, Shagimardanova E, Alexeev D, Govorun V, Wisecaver J, Mikheyev A, Koyanagi R, Fujie M, Nishiyama T, Shigenobu S, Shibata TF, Golygina V, Hasebe M, Okuda T, Satoh N, Kikawada T.

Nat Commun. 2014 Sep 12;5:4784. doi: 10.1038/ncomms5784.

46.

Analysis of a novel gene, Sdgc, reveals sex chromosome-dependent differences of medaka germ cells prior to gonad formation.

Nishimura T, Herpin A, Kimura T, Hara I, Kawasaki T, Nakamura S, Yamamoto Y, Saito TL, Yoshimura J, Morishita S, Tsukahara T, Kobayashi S, Naruse K, Shigenobu S, Sakai N, Schartl M, Tanaka M.

Development. 2014 Sep;141(17):3363-9. doi: 10.1242/dev.106864. Epub 2014 Jul 30.

47.

Whole-Genome Sequence of Burkholderia sp. Strain RPE67, a Bacterial Gut Symbiont of the Bean Bug Riptortus pedestris.

Takeshita K, Shibata TF, Nikoh N, Nishiyama T, Hasebe M, Fukatsu T, Shigenobu S, Kikuchi Y.

Genome Announc. 2014 Jun 19;2(3). pii: e00556-14. doi: 10.1128/genomeA.00556-14.

48.

Methylome diversification through changes in DNA methyltransferase sequence specificity.

Furuta Y, Namba-Fukuyo H, Shibata TF, Nishiyama T, Shigenobu S, Suzuki Y, Sugano S, Hasebe M, Kobayashi I.

PLoS Genet. 2014 Apr 10;10(4):e1004272. doi: 10.1371/journal.pgen.1004272. eCollection 2014 Apr.

49.

Development of new PCR primers by comparative genomics for the detection of Helicobacter suis in gastric biopsy specimens.

Matsui H, Takahashi T, Murayama SY, Uchiyama I, Yamaguchi K, Shigenobu S, Matsumoto T, Kawakubo M, Horiuchi K, Ota H, Osaki T, Kamiya S, Smet A, Flahou B, Ducatelle R, Haesebrouck F, Takahashi S, Nakamura S, Nakamura M.

Helicobacter. 2014 Aug;19(4):260-71. doi: 10.1111/hel.12127. Epub 2014 Mar 28.

PMID:
24673878
50.

Sex chromosome turnover contributes to genomic divergence between incipient stickleback species.

Yoshida K, Makino T, Yamaguchi K, Shigenobu S, Hasebe M, Kawata M, Kume M, Mori S, Peichel CL, Toyoda A, Fujiyama A, Kitano J.

PLoS Genet. 2014 Mar 13;10(3):e1004223. doi: 10.1371/journal.pgen.1004223. eCollection 2014 Mar.

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