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Items: 1 to 50 of 73

1.

Niche Separation Increases With Genetic Distance Among Bloom-Forming Cyanobacteria.

Tromas N, Taranu ZE, Martin BD, Willis A, Fortin N, Greer CW, Shapiro BJ.

Front Microbiol. 2018 Mar 27;9:438. doi: 10.3389/fmicb.2018.00438. eCollection 2018.

2.

Vibrio cholerae genomic diversity within and between patients.

Levade I, Terrat Y, Leducq JB, Weil AA, Mayo-Smith LM, Chowdhury F, Khan AI, Boncy J, Buteau J, Ivers LC, Ryan ET, Charles RC, Calderwood SB, Qadri F, Harris JB, LaRocque RC, Shapiro BJ.

Microb Genom. 2017 Dec;3(12). doi: 10.1099/mgen.0.000142.

3.

The population genetics of pangenomes.

Shapiro BJ.

Nat Microbiol. 2017 Dec;2(12):1574. doi: 10.1038/s41564-017-0066-6. No abstract available.

PMID:
29176697
4.

The Inuit gut microbiome is dynamic over time and shaped by traditional foods.

Dubois G, Girard C, Lapointe FJ, Shapiro BJ.

Microbiome. 2017 Nov 16;5(1):151. doi: 10.1186/s40168-017-0370-7.

5.

Cooking and co-ingested polyphenols reduce in vitro methylmercury bioaccessibility from fish and may alter exposure in humans.

Girard C, Charette T, Leclerc M, Shapiro BJ, Amyot M.

Sci Total Environ. 2018 Mar;616-617:863-874. doi: 10.1016/j.scitotenv.2017.10.236. Epub 2017 Oct 31.

PMID:
29096961
6.

Characterising and predicting cyanobacterial blooms in an 8-year amplicon sequencing time course.

Tromas N, Fortin N, Bedrani L, Terrat Y, Cardoso P, Bird D, Greer CW, Shapiro BJ.

ISME J. 2017 Aug;11(8):1746-1763. doi: 10.1038/ismej.2017.58. Epub 2017 May 19.

PMID:
28524869
7.

Mitochondrial Recombination and Introgression during Speciation by Hybridization.

Leducq JB, Henault M, Charron G, Nielly-Thibault L, Terrat Y, Fiumera HL, Shapiro BJ, Landry CR.

Mol Biol Evol. 2017 Aug 1;34(8):1947-1959. doi: 10.1093/molbev/msx139.

PMID:
28444332
8.

Gut Microbiome of the Canadian Arctic Inuit.

Girard C, Tromas N, Amyot M, Shapiro BJ.

mSphere. 2017 Jan 4;2(1). pii: e00297-16. doi: 10.1128/mSphere.00297-16. eCollection 2017 Jan-Feb.

9.

Origins of pandemic Vibrio cholerae from environmental gene pools.

Shapiro BJ, Levade I, Kovacikova G, Taylor RK, Almagro-Moreno S.

Nat Microbiol. 2016 Dec 19;2:16240. doi: 10.1038/nmicrobiol.2016.240.

PMID:
27991885
10.

Phenotypic differentiation of Streptococcus pyogenes populations is induced by recombination-driven gene-specific sweeps.

Bao YJ, Shapiro BJ, Lee SW, Ploplis VA, Castellino FJ.

Sci Rep. 2016 Nov 8;6:36644. doi: 10.1038/srep36644.

11.

Environment and host species shape the skin microbiome of captive neotropical bats.

Lemieux-Labonté V, Tromas N, Shapiro BJ, Lapointe FJ.

PeerJ. 2016 Sep 20;4:e2430. doi: 10.7717/peerj.2430. eCollection 2016.

12.

How clonal are bacteria over time?

Shapiro BJ.

Curr Opin Microbiol. 2016 Jun;31:116-123. doi: 10.1016/j.mib.2016.03.013. Epub 2016 Apr 5. Review.

PMID:
27057964
13.

What Is Speciation?

Shapiro BJ, Leducq JB, Mallet J.

PLoS Genet. 2016 Mar 31;12(3):e1005860. doi: 10.1371/journal.pgen.1005860. eCollection 2016 Mar. Review.

14.

Population genomics of Mycobacterium tuberculosis in the Inuit.

Lee RS, Radomski N, Proulx JF, Levade I, Shapiro BJ, McIntosh F, Soualhine H, Menzies D, Behr MA.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13609-14. doi: 10.1073/pnas.1507071112. Epub 2015 Oct 19.

15.

Microbial Speciation.

Shapiro BJ, Polz MF.

Cold Spring Harb Perspect Biol. 2015 Sep 9;7(10):a018143. doi: 10.1101/cshperspect.a018143. Review.

16.

Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus.

Andersen KG, Shapiro BJ, Matranga CB, Sealfon R, Lin AE, Moses LM, Folarin OA, Goba A, Odia I, Ehiane PE, Momoh M, England EM, Winnicki S, Branco LM, Gire SK, Phelan E, Tariyal R, Tewhey R, Omoniwa O, Fullah M, Fonnie R, Fonnie M, Kanneh L, Jalloh S, Gbakie M, Saffa S, Karbo K, Gladden AD, Qu J, Stremlau M, Nekoui M, Finucane HK, Tabrizi S, Vitti JJ, Birren B, Fitzgerald M, McCowan C, Ireland A, Berlin AM, Bochicchio J, Tazon-Vega B, Lennon NJ, Ryan EM, Bjornson Z, Milner DA Jr, Lukens AK, Broodie N, Rowland M, Heinrich M, Akdag M, Schieffelin JS, Levy D, Akpan H, Bausch DG, Rubins K, McCormick JB, Lander ES, Günther S, Hensley L, Okogbenin S; Viral Hemorrhagic Fever Consortium, Schaffner SF, Okokhere PO, Khan SH, Grant DS, Akpede GO, Asogun DA, Gnirke A, Levin JZ, Happi CT, Garry RF, Sabeti PC.

Cell. 2015 Aug 13;162(4):738-50. doi: 10.1016/j.cell.2015.07.020.

17.

The advent of genome-wide association studies for bacteria.

Chen PE, Shapiro BJ.

Curr Opin Microbiol. 2015 Jun;25:17-24. doi: 10.1016/j.mib.2015.03.002. Epub 2015 Mar 31. Review.

PMID:
25835153
18.

Promethazine use among chronic pain patients.

Lynch KL, Shapiro BJ, Coffa D, Novak SP, Kral AH.

Drug Alcohol Depend. 2015 May 1;150:92-7. doi: 10.1016/j.drugalcdep.2015.02.023. Epub 2015 Feb 26.

19.

A phylogeny-based sampling strategy and power calculator informs genome-wide associations study design for microbial pathogens.

Farhat MR, Shapiro BJ, Sheppard SK, Colijn C, Murray M.

Genome Med. 2014 Nov 15;6(11):101. doi: 10.1186/s13073-014-0101-7. eCollection 2014.

20.

Evolutionary consequences of intra-patient phage predation on microbial populations.

Seed KD, Yen M, Shapiro BJ, Hilaire IJ, Charles RC, Teng JE, Ivers LC, Boncy J, Harris JB, Camilli A.

Elife. 2014 Aug 26;3:e03497. doi: 10.7554/eLife.03497.

21.

Ordering microbial diversity into ecologically and genetically cohesive units.

Shapiro BJ, Polz MF.

Trends Microbiol. 2014 May;22(5):235-47. doi: 10.1016/j.tim.2014.02.006. Epub 2014 Mar 13. Review.

22.

Signatures of natural selection and ecological differentiation in microbial genomes.

Shapiro BJ.

Adv Exp Med Biol. 2014;781:339-59. doi: 10.1007/978-94-007-7347-9_17. Review.

PMID:
24277308
23.

Genomic analysis identifies targets of convergent positive selection in drug-resistant Mycobacterium tuberculosis.

Farhat MR, Shapiro BJ, Kieser KJ, Sultana R, Jacobson KR, Victor TC, Warren RM, Streicher EM, Calver A, Sloutsky A, Kaur D, Posey JE, Plikaytis B, Oggioni MR, Gardy JL, Johnston JC, Rodrigues M, Tang PK, Kato-Maeda M, Borowsky ML, Muddukrishna B, Kreiswirth BN, Kurepina N, Galagan J, Gagneux S, Birren B, Rubin EJ, Lander ES, Sabeti PC, Murray M.

Nat Genet. 2013 Oct;45(10):1183-9. doi: 10.1038/ng.2747. Epub 2013 Sep 1.

24.

Promethazine misuse among methadone maintenance patients and community-based injection drug users.

Shapiro BJ, Lynch KL, Toochinda T, Lutnick A, Cheng HY, Kral AH.

J Addict Med. 2013 Mar-Apr;7(2):96-101. doi: 10.1097/ADM.0b013e31827f9b43.

25.

Sympatric speciation: when is it possible in bacteria?

Friedman J, Alm EJ, Shapiro BJ.

PLoS One. 2013;8(1):e53539. doi: 10.1371/journal.pone.0053539. Epub 2013 Jan 17.

26.

Population genomics of early events in the ecological differentiation of bacteria.

Shapiro BJ, Friedman J, Cordero OX, Preheim SP, Timberlake SC, Szabó G, Polz MF, Alm EJ.

Science. 2012 Apr 6;336(6077):48-51. doi: 10.1126/science.1218198.

27.

The slow:fast substitution ratio reveals changing patterns of natural selection in gamma-proteobacterial genomes.

Shapiro BJ, Alm E.

ISME J. 2009 Oct;3(10):1180-92. doi: 10.1038/ismej.2009.51. Epub 2009 May 21.

PMID:
19458656
28.

Looking for Darwin's footprints in the microbial world.

Shapiro BJ, David LA, Friedman J, Alm EJ.

Trends Microbiol. 2009 May;17(5):196-204. doi: 10.1016/j.tim.2009.02.002. Epub 2009 Apr 15. Review.

PMID:
19375326
29.

Comparing patterns of natural selection across species using selective signatures.

Shapiro BJ, Alm EJ.

PLoS Genet. 2008 Feb;4(2):e23. doi: 10.1371/journal.pgen.0040023. Erratum in: PLoS Genet. 2008 Jun;4(6). doi: 10.1371/annotation/fced1166-1825-485c-88b9-d6ec950326c8.

30.

An experimental test of the causes of small-scale phenotypic differentiation in a population of great tits.

Shapiro BJ, Garant D, Wilkin TA, Sheldon BC.

J Evol Biol. 2006 Jan;19(1):176-83.

31.

Pharmacokinetics of Ibuprofen in children with cystic fibrosis.

Han EE, Beringer PM, Louie SG, Gill MA, Shapiro BJ.

Clin Pharmacokinet. 2004;43(3):145-56. Review.

PMID:
14871154
32.

Distribution and elimination of tobramycin administered in single or multiple daily doses in adult patients with cystic fibrosis.

Aminimanizani A, Beringer PM, Kang J, Tsang L, Jelliffe RW, Shapiro BJ.

J Antimicrob Chemother. 2002 Oct;50(4):553-9.

PMID:
12356801
33.
34.

Population pharmacokinetics and use of Monte Carlo simulation to evaluate currently recommended dosing regimens of ciprofloxacin in adult patients with cystic fibrosis.

Montgomery MJ, Beringer PM, Aminimanizani A, Louie SG, Shapiro BJ, Jelliffe R, Gill MA.

Antimicrob Agents Chemother. 2001 Dec;45(12):3468-73.

35.

Pharmacokinetics of tobramycin in adults with cystic fibrosis: implications for once-daily administration.

Beringer PM, Vinks AA, Jelliffe RW, Shapiro BJ.

Antimicrob Agents Chemother. 2000 Apr;44(4):809-13.

36.

Lung transplantation for cystic fibrosis: an update and practical considerations for referring candidates.

Shapiro BJ, Veeraraghavan S, Barbers RG.

Curr Opin Pulm Med. 1999 Nov;5(6):365-70. Review. Erratum in: Curr Opin Pulm Med 2000 Mar;6(2):170.

PMID:
10570738
37.

Cystic fibrosis.

Shapiro BJ.

Curr Opin Pulm Med. 1999 Nov;5(6):363-4. No abstract available.

PMID:
10570737
38.

Whole-lung vs lobe transplantation for adults.

Shapiro BJ, Chan KM, Barbers RG, Starnes VA.

Arch Intern Med. 1996 Apr 22;156(8):908. No abstract available.

PMID:
8774210
39.

Conventional treatment of cystic fibrosis.

Shapiro BJ.

West J Med. 1992 Aug;157(2):174-5. No abstract available.

40.

Mediastinal masses: magnetic resonance imaging in comparison with computed tomography.

Batra P, Brown K, Collins JD, Holmes EC, Steckel RJ, Shapiro BJ.

J Natl Med Assoc. 1991 Nov;83(11):969-74.

41.

Sensitivity and specificity of first screen mammography in the Canadian National Breast Screening Study: a preliminary report from five centers.

Baines CJ, Miller AB, Wall C, McFarlane DV, Simor IS, Jong R, Shapiro BJ, Audet L, Petitclerc M, Ouimet-Oliva D, et al.

Radiology. 1986 Aug;160(2):295-8.

PMID:
3523590
42.

Conservation of oxygen supply using a reservoir nasal cannula in hypoxemic patients at rest and during exercise.

Soffer M, Tashkin DP, Shapiro BJ, Littner M, Harvey E, Farr S.

Chest. 1985 Nov;88(5):663-8.

PMID:
3931988
43.

The IPPB trial.

Shapiro BJ, Welch MA Jr, Mercurio P.

Ann Intern Med. 1984 Mar;100(3):457-8. No abstract available.

PMID:
6364913
44.

Acute and subacute bronchial effects of oral cannabinoids.

Gong H Jr, Tashkin DP, Simmons MS, Calvarese B, Shapiro BJ.

Clin Pharmacol Ther. 1984 Jan;35(1):26-32.

PMID:
6690168
45.

Radionuclide salivary gland imaging of maxillary sinus oncocytoma.

Noyek AM, Greyson ND, Cooter N, Shapiro BJ.

J Otolaryngol. 1982 Feb;11(1):17-22. No abstract available.

PMID:
6281452
46.

Respiratory status of seventy-four habitual marijuana smokers.

Tashkin DP, Calvarese BM, Simmons MS, Shapiro BJ.

Chest. 1980 Nov;78(5):699-706.

PMID:
7428453
47.

Methods of intermittent positive pressure breathing.

Welch MA Jr, Shapiro BJ, Mercurio P, Wagner W, Hirayama G.

Chest. 1980 Sep;78(3):463-7.

PMID:
6998663
48.

In memoriam: James Norman Harvie, M.D., F.R.C.P. (C) 1920--1979.

Shapiro BJ.

Radiology. 1980 Jul;136(1):262. No abstract available.

PMID:
6992209
49.

In memoriam: Aurel Haber, M.D. 1914--1979.

Shapiro BJ.

Radiology. 1980 Jul;136(1):261. No abstract available.

PMID:
6992208
50.

Familial Warthin's tumor. 1. Its synchronous occurrence in mother and son. 2. Its association with cystic oncocytic metaplasia of the larynx.

Noyek AM, Pritzker KP, Greyson ND, Blackstein M, Chapnik JS, Shapiro BJ.

J Otolaryngol. 1980 Feb;9(1):90-6.

PMID:
7359619

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