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Items: 30


Tissue Tropism in Host Transcriptional Response to Members of the Bovine Respiratory Disease Complex.

Behura SK, Tizioto PC, Kim J, Grupioni NV, Seabury CM, Schnabel RD, Gershwin LJ, Van Eenennaam AL, Toaff-Rosenstein R, Neibergs HL, Regitano LCA, Taylor JF.

Sci Rep. 2017 Dec 20;7(1):17938. doi: 10.1038/s41598-017-18205-0.


Rapid Communication: Subclinical bovine respiratory disease - loci and pathogens associated with lung lesions in feedlot cattle.

Kiser JN, Lawrence TE, Neupane M, Seabury CM, Taylor JF, Womack JE, Neibergs HL.

J Anim Sci. 2017 Jun;95(6):2726-2731. doi: 10.2527/jas.2017.1548.


Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity and Historic Effective Population Size.

Oldeschulte DL, Halley YA, Wilson ML, Bhattarai EK, Brashear W, Hill J, Metz RP, Johnson CD, Rollins D, Peterson MJ, Bickhart DM, Decker JE, Sewell JF, Seabury CM.

G3 (Bethesda). 2017 Sep 7;7(9):3047-3058. doi: 10.1534/g3.117.043083.


Genome-wide association study for feed efficiency and growth traits in U.S. beef cattle.

Seabury CM, Oldeschulte DL, Saatchi M, Beever JE, Decker JE, Halley YA, Bhattarai EK, Molaei M, Freetly HC, Hansen SL, Yampara-Iquise H, Johnson KA, Kerley MS, Kim J, Loy DD, Marques E, Neibergs HL, Schnabel RD, Shike DW, Spangler ML, Weaber RL, Garrick DJ, Taylor JF.

BMC Genomics. 2017 May 18;18(1):386. doi: 10.1186/s12864-017-3754-y.


Disparate Modes of Evolution Shaped Modern Prion (PRNP) and Prion-Related Doppel (PRND) Variation in Domestic Cattle.

Brunelle BW, O'Grady AM, Nicholson EM, Seabury CM.

PLoS One. 2016 May 25;11(5):e0155924. doi: 10.1371/journal.pone.0155924. eCollection 2016.


Northern Bobwhite (Colinus virginianus) Mitochondrial Population Genomics Reveals Structure, Divergence, and Evidence for Heteroplasmy.

Halley YA, Oldeschulte DL, Bhattarai EK, Hill J, Metz RP, Johnson CD, Presley SM, Ruzicka RE, Rollins D, Peterson MJ, Murphy WJ, Seabury CM.

PLoS One. 2015 Dec 29;10(12):e0144913. doi: 10.1371/journal.pone.0144913. eCollection 2015.


Immunological Response to Single Pathogen Challenge with Agents of the Bovine Respiratory Disease Complex: An RNA-Sequence Analysis of the Bronchial Lymph Node Transcriptome.

Tizioto PC, Kim J, Seabury CM, Schnabel RD, Gershwin LJ, Van Eenennaam AL, Toaff-Rosenstein R, Neibergs HL; Bovine Respiratory Disease Complex Coordinated Agricultural Project Research Team, Taylor JF.

PLoS One. 2015 Jun 29;10(6):e0131459. doi: 10.1371/journal.pone.0131459. eCollection 2015.


Mechanisms Underlying Mammalian Hybrid Sterility in Two Feline Interspecies Models.

Davis BW, Seabury CM, Brashear WA, Li G, Roelke-Parker M, Murphy WJ.

Mol Biol Evol. 2015 Oct;32(10):2534-46. doi: 10.1093/molbev/msv124. Epub 2015 May 25.


Susceptibility loci revealed for bovine respiratory disease complex in pre-weaned holstein calves.

Neibergs HL, Seabury CM, Wojtowicz AJ, Wang Z, Scraggs E, Kiser JN, Neupane M, Womack JE, Van Eenennaam A, Hagevoort GR, Lehenbauer TW, Aly S, Davis J, Taylor JF; Bovine Respiratory Disease Complex Coordinated Agricultural Project Research Team.

BMC Genomics. 2014 Dec 22;15:1164. doi: 10.1186/1471-2164-15-1164.


QTLs associated with dry matter intake, metabolic mid-test weight, growth and feed efficiency have little overlap across 4 beef cattle studies.

Saatchi M, Beever JE, Decker JE, Faulkner DB, Freetly HC, Hansen SL, Yampara-Iquise H, Johnson KA, Kachman SD, Kerley MS, Kim J, Loy DD, Marques E, Neibergs HL, Pollak EJ, Schnabel RD, Seabury CM, Shike DW, Snelling WM, Spangler ML, Weaber RL, Garrick DJ, Taylor JF.

BMC Genomics. 2014 Nov 20;15:1004. doi: 10.1186/1471-2164-15-1004.


Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle.

Decker JE, McKay SD, Rolf MM, Kim J, Molina Alcalá A, Sonstegard TS, Hanotte O, Götherström A, Seabury CM, Praharani L, Babar ME, Correia de Almeida Regitano L, Yildiz MA, Heaton MP, Liu WS, Lei CZ, Reecy JM, Saif-Ur-Rehman M, Schnabel RD, Taylor JF.

PLoS Genet. 2014 Mar 27;10(3):e1004254. doi: 10.1371/journal.pgen.1004254. eCollection 2014 Mar.


A draft de novo genome assembly for the northern bobwhite (Colinus virginianus) reveals evidence for a rapid decline in effective population size beginning in the Late Pleistocene.

Halley YA, Dowd SE, Decker JE, Seabury PM, Bhattarai E, Johnson CD, Rollins D, Tizard IR, Brightsmith DJ, Peterson MJ, Taylor JF, Seabury CM.

PLoS One. 2014 Mar 12;9(3):e90240. doi: 10.1371/journal.pone.0090240. eCollection 2014.


Innate immune gene variation and differential susceptibility to uterine diseases in Holstein cows.

Pinedo PJ, Galvão KN, Seabury CM.

Theriogenology. 2013 Sep 1;80(4):384-90. doi: 10.1016/j.theriogenology.2013.04.027. Epub 2013 Jun 12.


A multi-platform draft de novo genome assembly and comparative analysis for the Scarlet Macaw (Ara macao).

Seabury CM, Dowd SE, Seabury PM, Raudsepp T, Brightsmith DJ, Liboriussen P, Halley Y, Fisher CA, Owens E, Viswanathan G, Tizard IR.

PLoS One. 2013 May 8;8(5):e62415. doi: 10.1371/journal.pone.0062415. Print 2013.


Evolution of the bovine TLR gene family and member associations with Mycobacterium avium subspecies paratuberculosis infection.

Fisher CA, Bhattarai EK, Osterstock JB, Dowd SE, Seabury PM, Vikram M, Whitlock RH, Schukken YH, Schnabel RD, Taylor JF, Womack JE, Seabury CM.

PLoS One. 2011;6(11):e27744. doi: 10.1371/journal.pone.0027744. Epub 2011 Nov 30. Erratum in: PLoS One. 2012;7(1):doi/10.1371/annotation/429afd9a-2892-47ac-a403-008496b2e8db. PLoS One. 2012;7(1):doi/10.1371/annotation/63a06de9-db62-4651-87f3-a5fd431dcd80. PLoS One. 2012;7(2):doi/10.1371/annotation/a84f0490-55cd-4b42-8b2e-72661fabfc22.


Genome-wide polymorphism and comparative analyses in the white-tailed deer (Odocoileus virginianus): a model for conservation genomics.

Seabury CM, Bhattarai EK, Taylor JF, Viswanathan GG, Cooper SM, Davis DS, Dowd SE, Lockwood ML, Seabury PM.

PLoS One. 2011 Jan 19;6(1):e15811. doi: 10.1371/journal.pone.0015811. Erratum in: PLoS One. 2011;6(2). doi: 10.1371/annotation/80c6965b-ffa0-4100-8a20-3f41a08b2894.


Effect of classifying disease states in genetic association studies for paratuberculosis.

Osterstock JB, Sinha S, Seabury CM, Cohen ND.

Prev Vet Med. 2010 Jun 1;95(1-2):41-9. doi: 10.1016/j.prevetmed.2010.03.005. Epub 2010 Apr 2.


Diversity and evolution of 11 innate immune genes in Bos taurus taurus and Bos taurus indicus cattle.

Seabury CM, Seabury PM, Decker JE, Schnabel RD, Taylor JF, Womack JE.

Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):151-6. doi: 10.1073/pnas.0913006107. Epub 2009 Dec 14.


Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics.

Decker JE, Pires JC, Conant GC, McKay SD, Heaton MP, Chen K, Cooper A, Vilkki J, Seabury CM, Caetano AR, Johnson GS, Brenneman RA, Hanotte O, Eggert LS, Wiener P, Kim JJ, Kim KS, Sonstegard TS, Van Tassell CP, Neibergs HL, McEwan JC, Brauning R, Coutinho LL, Babar ME, Wilson GA, McClure MC, Rolf MM, Kim J, Schnabel RD, Taylor JF.

Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18644-9. doi: 10.1073/pnas.0904691106. Epub 2009 Oct 21.


Sequence analysis and polymorphism discovery in 4 members of the bovine cathelicidin gene family.

Gillenwaters EN, Seabury CM, Elliott JS, Womack JE.

J Hered. 2009 Mar-Apr;100(2):241-5. doi: 10.1093/jhered/esn112. Epub 2009 Jan 8.


A 4,103 marker integrated physical and comparative map of the horse genome.

Raudsepp T, Gustafson-Seabury A, Durkin K, Wagner ML, Goh G, Seabury CM, Brinkmeyer-Langford C, Lee EJ, Agarwala R, Stallknecht-Rice E, Schäffer AA, Skow LC, Tozaki T, Yasue H, Penedo MC, Lyons LA, Khazanehdari KA, Binns MM, MacLeod JN, Distl O, Guérin G, Leeb T, Mickelson JR, Chowdhary BP.

Cytogenet Genome Res. 2008;122(1):28-36. doi: 10.1159/000151313. Epub 2008 Oct 14.


Frequencies of polymorphisms associated with BSE resistance differ significantly between Bos taurus, Bos indicus, and composite cattle.

Brunelle BW, Greenlee JJ, Seabury CM, Brown CE 2nd, Nicholson EM.

BMC Vet Res. 2008 Sep 22;4:36. doi: 10.1186/1746-6148-4-36.


Analysis of sequence variability and protein domain architectures for bovine peptidoglycan recognition protein 1 and Toll-like receptors 2 and 6.

Seabury CM, Womack JE.

Genomics. 2008 Oct;92(4):235-45. doi: 10.1016/j.ygeno.2008.06.005. Epub 2008 Aug 9.


Molecular characterization of the Rocky Mountain elk (Cervus elaphus nelsoni) PRNP putative promoter.

Seabury CM, Gill CA, Templeton JW, Dyar JB, Derr JN, Adelson DL, Owens E, Davis DS, Kraemer DC, Womack JE.

J Hered. 2007 Nov-Dec;98(7):678-86. Epub 2007 Nov 21.


Sequence variability and protein domain architectures for bovine Toll-like receptors 1, 5, and 10.

Seabury CM, Cargill EJ, Womack JE.

Genomics. 2007 Oct;90(4):502-15. Epub 2007 Aug 27.


Evaluation of novel Brucella melitensis unmarked deletion mutants for safety and efficacy in the goat model of brucellosis.

Kahl-McDonagh MM, Elzer PH, Hagius SD, Walker JV, Perry QL, Seabury CM, den Hartigh AB, Tsolis RM, Adams LG, Davis DS, Ficht TA.

Vaccine. 2006 Jun 12;24(24):5169-77. Epub 2006 Apr 27.


Bison PRNP genotyping and potential association with Brucella spp. seroprevalence.

Seabury CM, Halbert ND, Gogan PJ, Templeton JW, Derr JN.

Anim Genet. 2005 Apr;36(2):104-10.


Comparative PRNP genotyping of U.S. cattle sires for potential association with BSE.

Seabury CM, Womack JE, Piedrahita J, Derr JN.

Mamm Genome. 2004 Oct;15(10):828-33.


Prion protein gene (PRNP) variants and evidence for strong purifying selection in functionally important regions of bovine exon 3.

Seabury CM, Honeycutt RL, Rooney AP, Halbert ND, Derr JN.

Proc Natl Acad Sci U S A. 2004 Oct 19;101(42):15142-7. Epub 2004 Oct 11.


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