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Items: 1 to 50 of 93

1.

Using single-cell genomics to understand developmental processes and cell fate decisions.

Griffiths JA, Scialdone A, Marioni JC.

Mol Syst Biol. 2018 Apr 16;14(4):e8046. doi: 10.15252/msb.20178046. Review.

2.

Erratum: Pluripotent state transitions coordinate morphogenesis in mouse and human embryos.

Shahbazi MN, Scialdone A, Skorupska N, Weberling A, Recher G, Zhu M, Jedrusik A, Devito LG, Noli L, Macaulay IC, Buecker C, Khalaf Y, Ilic D, Voet T, Marioni JC, Zernicka-Goetz M.

Nature. 2018 Feb 28;555(7694):126. doi: 10.1038/nature25995.

PMID:
29493594
3.

Spatiotemporal patterning of EpCAM is important for murine embryonic endo- and mesodermal differentiation.

Sarrach S, Huang Y, Niedermeyer S, Hachmeister M, Fischer L, Gille S, Pan M, Mack B, Kranz G, Libl D, Merl-Pham J, Hauck SM, Paoluzzi Tomada E, Kieslinger M, Jeremias I, Scialdone A, Gires O.

Sci Rep. 2018 Jan 29;8(1):1801. doi: 10.1038/s41598-018-20131-8.

4.

Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation.

Ibarra-Soria X, Jawaid W, Pijuan-Sala B, Ladopoulos V, Scialdone A, Jörg DJ, Tyser RCV, Calero-Nieto FJ, Mulas C, Nichols J, Vallier L, Srinivas S, Simons BD, Göttgens B, Marioni JC.

Nat Cell Biol. 2018 Feb;20(2):127-134. doi: 10.1038/s41556-017-0013-z. Epub 2018 Jan 8.

PMID:
29311656
5.

Pluripotent state transitions coordinate morphogenesis in mouse and human embryos.

Shahbazi MN, Scialdone A, Skorupska N, Weberling A, Recher G, Zhu M, Jedrusik A, Devito LG, Noli L, Macaulay IC, Buecker C, Khalaf Y, Ilic D, Voet T, Marioni JC, Zernicka-Goetz M.

Nature. 2017 Dec 14;552(7684):239-243. doi: 10.1038/nature24675. Epub 2017 Nov 29. Erratum in: Nature. 2018 Feb 28;555(7694):126.

PMID:
29186120
6.

Mosaic autosomal aneuploidies are detectable from single-cell RNAseq data.

Griffiths JA, Scialdone A, Marioni JC.

BMC Genomics. 2017 Nov 25;18(1):904. doi: 10.1186/s12864-017-4253-x.

7.

Single-Cell Landscape of Transcriptional Heterogeneity and Cell Fate Decisions during Mouse Early Gastrulation.

Mohammed H, Hernando-Herraez I, Savino A, Scialdone A, Macaulay I, Mulas C, Chandra T, Voet T, Dean W, Nichols J, Marioni JC, Reik W.

Cell Rep. 2017 Aug 1;20(5):1215-1228. doi: 10.1016/j.celrep.2017.07.009.

8.

Visual performance after bilateral implantation of 2 new presbyopia-correcting intraocular lenses: Trifocal versus extended range of vision.

Monaco G, Gari M, Di Censo F, Poscia A, Ruggi G, Scialdone A.

J Cataract Refract Surg. 2017 Jun;43(6):737-747. doi: 10.1016/j.jcrs.2017.03.037.

PMID:
28732606
9.

Normalizing single-cell RNA sequencing data: challenges and opportunities.

Vallejos CA, Risso D, Scialdone A, Dudoit S, Marioni JC.

Nat Methods. 2017 Jun;14(6):565-571. doi: 10.1038/nmeth.4292. Epub 2017 May 15.

10.

The HDAC inhibitor valproate induces a bivalent status of the CD20 promoter in CLL patients suggesting distinct epigenetic regulation of CD20 expression in CLL in vivo.

Scialdone A, Hasni MS, Damm JK, Lennartsson A, Gullberg U, Drott K.

Oncotarget. 2017 Jun 6;8(23):37409-37422. doi: 10.18632/oncotarget.16964.

11.

Adipocyte Accumulation in the Bone Marrow during Obesity and Aging Impairs Stem Cell-Based Hematopoietic and Bone Regeneration.

Ambrosi TH, Scialdone A, Graja A, Gohlke S, Jank AM, Bocian C, Woelk L, Fan H, Logan DW, Schürmann A, Saraiva LR, Schulz TJ.

Cell Stem Cell. 2017 Jun 1;20(6):771-784.e6. doi: 10.1016/j.stem.2017.02.009. Epub 2017 Mar 16.

12.

Complex multi-enhancer contacts captured by genome architecture mapping.

Beagrie RA, Scialdone A, Schueler M, Kraemer DC, Chotalia M, Xie SQ, Barbieri M, de Santiago I, Lavitas LM, Branco MR, Fraser J, Dostie J, Game L, Dillon N, Edwards PA, Nicodemi M, Pombo A.

Nature. 2017 Mar 23;543(7646):519-524. doi: 10.1038/nature21411. Epub 2017 Mar 8.

13.

IBTK Differently Modulates Gene Expression and RNA Splicing in HeLa and K562 Cells.

Fiume G, Scialdone A, Rizzo F, De Filippo MR, Laudanna C, Albano F, Golino G, Vecchio E, Pontoriero M, Mimmi S, Ceglia S, Pisano A, Iaccino E, Palmieri C, Paduano S, Viglietto G, Weisz A, Scala G, Quinto I.

Int J Mol Sci. 2016 Nov 7;17(11). pii: E1848.

14.

Morphometric Analyses by a New Slit-Lamp Endothelial Biomicroscope.

Ferraro L, Cozza F, Scialdone A, Borghesi A, Tavazzi S.

Cornea. 2016 Oct;35(10):1347-54. doi: 10.1097/ICO.0000000000000964.

PMID:
27490047
15.

Resolving early mesoderm diversification through single-cell expression profiling.

Scialdone A, Tanaka Y, Jawaid W, Moignard V, Wilson NK, Macaulay IC, Marioni JC, Göttgens B.

Nature. 2016 Jul 14;535(7611):289-293. doi: 10.1038/nature18633. Epub 2016 Jul 6.

16.

Heterogeneity in Oct4 and Sox2 Targets Biases Cell Fate in 4-Cell Mouse Embryos.

Goolam M, Scialdone A, Graham SJL, Macaulay IC, Jedrusik A, Hupalowska A, Voet T, Marioni JC, Zernicka-Goetz M.

Cell. 2016 Mar 24;165(1):61-74. doi: 10.1016/j.cell.2016.01.047.

17.

Hierarchical deconstruction of mouse olfactory sensory neurons: from whole mucosa to single-cell RNA-seq.

Saraiva LR, Ibarra-Soria X, Khan M, Omura M, Scialdone A, Mombaerts P, Marioni JC, Logan DW.

Sci Rep. 2015 Dec 16;5:18178. doi: 10.1038/srep18178.

18.

Long-term outcomes of limbal relaxing incisions during cataract surgery: aberrometric analysis.

Monaco G, Scialdone A.

Clin Ophthalmol. 2015 Aug 31;9:1581-7. doi: 10.2147/OPTH.S89024. eCollection 2015.

19.

Impairment of T cell development and acute inflammatory response in HIV-1 Tat transgenic mice.

Fiume G, Scialdone A, Albano F, Rossi A, Tuccillo FM, Rea D, Palmieri C, Caiazzo E, Cicala C, Bellevicine C, Falcone C, Vecchio E, Pisano A, Ceglia S, Mimmi S, Iaccino E, de Laurentiis A, Pontoriero M, Agosti V, Troncone G, Mignogna C, Palma G, Arra C, Mallardo M, Buonaguro FM, Scala G, Quinto I.

Sci Rep. 2015 Sep 7;5:13864. doi: 10.1038/srep13864.

20.

Computational assignment of cell-cycle stage from single-cell transcriptome data.

Scialdone A, Natarajan KN, Saraiva LR, Proserpio V, Teichmann SA, Stegle O, Marioni JC, Buettner F.

Methods. 2015 Sep 1;85:54-61. doi: 10.1016/j.ymeth.2015.06.021. Epub 2015 Jul 2.

21.

CRL3IBTK Regulates the Tumor Suppressor Pdcd4 through Ubiquitylation Coupled to Proteasomal Degradation.

Pisano A, Ceglia S, Palmieri C, Vecchio E, Fiume G, de Laurentiis A, Mimmi S, Falcone C, Iaccino E, Scialdone A, Pontoriero M, Masci FF, Valea R, Krishnan S, Gaspari M, Cuda G, Scala G, Quinto I.

J Biol Chem. 2015 May 29;290(22):13958-71. doi: 10.1074/jbc.M114.634535. Epub 2015 Apr 16.

22.

How plants manage food reserves at night: quantitative models and open questions.

Scialdone A, Howard M.

Front Plant Sci. 2015 Mar 31;6:204. doi: 10.3389/fpls.2015.00204. eCollection 2015. Review.

23.

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells.

Buettner F, Natarajan KN, Casale FP, Proserpio V, Scialdone A, Theis FJ, Teichmann SA, Marioni JC, Stegle O.

Nat Biotechnol. 2015 Feb;33(2):155-60. doi: 10.1038/nbt.3102. Epub 2015 Jan 19.

PMID:
25599176
24.

Single Cell Genomics meeting in Stockholm: from single cells to cell types.

Scialdone A, Achim K, Marioni JC.

Genome Biol. 2014 Oct 18;15(10):496. doi: 10.1186/s13059-014-0496-x.

25.

Arabidopsis plants perform arithmetic division to prevent starvation at night.

Scialdone A, Mugford ST, Feike D, Skeffington A, Borrill P, Graf A, Smith AM, Howard M.

Elife. 2013 Jun 25;2:e00669. doi: 10.7554/eLife.00669.

26.

Polymer models of chromatin organization.

Barbieri M, Scialdone A, Piccolo A, Chiariello AM, di Lanno C, Prisco A, Pombo A, Nicodemi M.

Front Genet. 2013 Jun 20;4:113. doi: 10.3389/fgene.2013.00113. eCollection 2013. No abstract available.

27.

Eukaryotic Initiation Factor 4H Is under Transcriptional Control of p65/NF-κB.

Fiume G, Rossi A, de Laurentiis A, Falcone C, Pisano A, Vecchio E, Pontoriero M, Scala I, Scialdone A, Masci FF, Mimmi S, Palmieri C, Scala G, Quinto I.

PLoS One. 2013 Jun 11;8(6):e66087. doi: 10.1371/journal.pone.0066087. Print 2013.

28.

Visual performance of 2 aspheric toric intraocular lenses: comparative study.

Scialdone A, De Gaetano F, Monaco G.

J Cataract Refract Surg. 2013 Jun;39(6):906-14. doi: 10.1016/j.jcrs.2013.01.037.

PMID:
23688877
29.

Colocalization of multiple DNA loci: a physical mechanism.

Bianco V, Scialdone A, Nicodemi M.

Biophys J. 2012 Nov 21;103(10):2223-32. doi: 10.1016/j.bpj.2012.08.056. Epub 2012 Nov 20.

30.

Design and characterization of a peptide mimotope of the HIV-1 gp120 bridging sheet.

Schiavone M, Fiume G, Caivano A, de Laurentiis A, Falcone C, Masci FF, Iaccino E, Mimmi S, Palmieri C, Pisano A, Pontoriero M, Rossi A, Scialdone A, Vecchio E, Andreozzi C, Trovato M, Rafay J, Ferko B, Montefiori D, Lombardi A, Morsica G, Poli G, Quinto I, Pavone V, de Berardinis P, Scala G.

Int J Mol Sci. 2012;13(5):5674-99. doi: 10.3390/ijms13055674. Epub 2012 May 10.

31.

Human immunodeficiency virus-1 Tat activates NF-κB via physical interaction with IκB-α and p65.

Fiume G, Vecchio E, De Laurentiis A, Trimboli F, Palmieri C, Pisano A, Falcone C, Pontoriero M, Rossi A, Scialdone A, Fasanella Masci F, Scala G, Quinto I.

Nucleic Acids Res. 2012 Apr;40(8):3548-62. doi: 10.1093/nar/gkr1224. Epub 2011 Dec 19.

32.

In vivo assessment of higher-order aberrations after AcrySof toric intraocular lens implantation: a comparative study.

Scialdone A, Raimondi G, Monaco G.

Eur J Ophthalmol. 2012 Jul-Aug;22(4):531-40. doi: 10.5301/ejo.5000090.

PMID:
22139617
33.

Biomicroscopy versus optical coherence tomography screening of epiretinal membranes in patients undergoing cataract surgery.

Milani P, Raimondi G, Morale D, Scialdone A.

Retina. 2012 May;32(5):897-904. doi: 10.1097/IAE.0b013e31822a8fec.

PMID:
22127223
34.

Conformation regulation of the X chromosome inactivation center: a model.

Scialdone A, Cataudella I, Barbieri M, Prisco A, Nicodemi M.

PLoS Comput Biol. 2011 Oct;7(10):e1002229. doi: 10.1371/journal.pcbi.1002229. Epub 2011 Oct 27.

35.

Retinal photoreceptor focal disruption secondary to accidental Nd:YAG laser exposure.

Milani P, Pierro L, Pece A, Marino V, Scialdone A.

Int Ophthalmol. 2011 Oct;31(5):409-12. doi: 10.1007/s10792-011-9469-1. Epub 2011 Oct 15.

PMID:
22002418
36.

Spectral domain OCT and autofluorescence imaging of unilateral acute idiopathic maculopathy.

Milani P, Cacioppo V, Raimondi G, Scialdone A.

Eur J Ophthalmol. 2012 May-Jun;22(3):499-502. doi: 10.5301/ejo.5000038.

PMID:
21928268
37.

Outer retinal layers.

Romano MR, Vinciguerra P, Radice P, Scialdone A, Valldeperas X, Romano V, Romano F, Costagliola C.

Ophthalmology. 2011 May;118(5):1006-1006.e2. doi: 10.1016/j.ophtha.2010.11.024. No abstract available.

PMID:
21539987
38.

Bevacizumab for macular serous neuroretinal detachment in tilted disk syndrome.

Milani P, Pece A, Pierro L, Seidenari P, Radice P, Scialdone A.

J Ophthalmol. 2010;2010:970580. doi: 10.1155/2010/970580. Epub 2010 Nov 30.

39.

Diffusion-based DNA target colocalization by thermodynamic mechanisms.

Scialdone A, Nicodemi M.

Development. 2010 Nov;137(22):3877-85. doi: 10.1242/dev.053322.

40.

DNA loci cross-talk through thermodynamics.

Scialdone A, Nicodemi M.

J Biomed Biotechnol. 2009;2009:516723. doi: 10.1155/2009/516723. Epub 2009 Sep 16.

41.

Intravitreal bevacizumab for CNV-complicated tilted disk syndrome.

Milani P, Pece A, Moretti G, Lino P, Scialdone A.

Graefes Arch Clin Exp Ophthalmol. 2009 Sep;247(9):1179-82. doi: 10.1007/s00417-009-1096-4. Epub 2009 May 3.

PMID:
19412700
42.

Mechanics and dynamics of X-chromosome pairing at X inactivation.

Scialdone A, Nicodemi M.

PLoS Comput Biol. 2008 Dec;4(12):e1000244. doi: 10.1371/journal.pcbi.1000244. Epub 2008 Dec 26.

43.

OCT-guided photodynamic therapy for angiographic occult CNV in pathologic myopia.

Milani P, Pierro L, Scialdone A.

Eur J Ophthalmol. 2008 Sep-Oct;18(5):837-40.

PMID:
18850571
44.

Visual acuity and contrast sensitivity comparison between Tecnis and AcrySof SA60AT intraocular lenses: A multicenter randomized study.

Bellucci R, Scialdone A, Buratto L, Morselli S, Chierego C, Criscuoli A, Moretti G, Piers P.

J Cataract Refract Surg. 2005 Apr;31(4):712-7. Erratum in: J Cataract Refract Surg. 2005 Oct;31(10):1857.

PMID:
15899447
45.

Atrial natriuretic factor and mitral valve prolapse syndrome.

Di Salvo G, Pergola V, Ratti G, Tedesco MA, Giordano C, Scialdone A, Iacono A.

Minerva Cardioangiol. 2001 Oct;49(5):317-25. Review. English, Italian.

PMID:
11533551
46.

[TNF alpha and heart failure].

Pergola V, Di Salvo G, Martiniello AR, Irace L, Tedesco MA, Scialdone A, Iacono A.

Minerva Cardioangiol. 2000 Dec;48(12):475-84. Review. Italian.

PMID:
11253333
47.

Electrophysiologic significance of leftward QRS axis deviation in bifascicular and trifascicular blocks.

Ducceschi V, Sarubbi B, D'Andrea A, Liccardo B, Lucca P, Mayer MS, Scialdone A, Santangelo L, Iacono A.

Clin Cardiol. 1998 Aug;21(8):579-83.

48.

A motorized hand piece for injectable lenses.

Scialdone A, Gobbi PG, Brancato R.

Ophthalmic Surg Lasers. 1997 Jun;28(6):518-9.

PMID:
9189959
49.

[Electrophysiological analysis of atrioventricular and intraventricular conduction in bi- and tri-fascicular blocks].

Ducceschi V 2nd, Sarubbi B, Mayer MS, De Divitiis M, Briglia N, Scialdone A, Santangelo L, Iacono A.

Minerva Cardioangiol. 1997 Mar;45(3):87-93. Italian.

PMID:
9213825
50.

[Sotalol, propafenone, and flecainide: compared multiparametric analysis of ventricular repolarization in subjects without organic cardiopathy].

Sarubbi B, Ducceschi V, Briglia N, Esposito R, Mayer MS, Scialdone A, Santangelo L, Iacono A.

Cardiologia. 1996 Jul;41(7):645-51. Italian.

PMID:
8983831

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