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Items: 43

1.

Fibril structure of amyloid-β(1-42) by cryo-electron microscopy.

Gremer L, Schölzel D, Schenk C, Reinartz E, Labahn J, Ravelli RBG, Tusche M, Lopez-Iglesias C, Hoyer W, Heise H, Willbold D, Schröder GF.

Science. 2017 Oct 6;358(6359):116-119. doi: 10.1126/science.aao2825. Epub 2017 Sep 7.

PMID:
28882996
2.

Conformational Heterogeneity in a Fully Complementary DNA Three-Way Junction with a GC-Rich Branchpoint.

Toulmin A, Baltierra-Jasso LE, Morten MJ, Sabir T, McGlynn P, Schröder GF, Smith BO, Magennis SW.

Biochemistry. 2017 Sep 19;56(37):4985-4991. doi: 10.1021/acs.biochem.7b00677. Epub 2017 Sep 1.

3.

Ca2+-induced movement of tropomyosin on native cardiac thin filaments revealed by cryoelectron microscopy.

Risi C, Eisner J, Belknap B, Heeley DH, White HD, Schröder GF, Galkin VE.

Proc Natl Acad Sci U S A. 2017 Jun 27;114(26):6782-6787. doi: 10.1073/pnas.1700868114. Epub 2017 Jun 12.

4.

The pathway to GTPase activation of elongation factor SelB on the ribosome.

Fischer N, Neumann P, Bock LV, Maracci C, Wang Z, Paleskava A, Konevega AL, Schröder GF, Grubmüller H, Ficner R, Rodnina MV, Stark H.

Nature. 2016 Dec 1;540(7631):80-85. doi: 10.1038/nature20560. Epub 2016 Nov 14.

PMID:
27842381
5.

β-Hairpin of Islet Amyloid Polypeptide Bound to an Aggregation Inhibitor.

Mirecka EA, Feuerstein S, Gremer L, Schröder GF, Stoldt M, Willbold D, Hoyer W.

Sci Rep. 2016 Sep 19;6:33474. doi: 10.1038/srep33474.

6.

Archaeal flagellin combines a bacterial type IV pilin domain with an Ig-like domain.

Braun T, Vos MR, Kalisman N, Sherman NE, Rachel R, Wirth R, Schröder GF, Egelman EH.

Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10352-7. doi: 10.1073/pnas.1607756113. Epub 2016 Aug 30.

7.

Coupling an Ensemble of Homologues Improves Refinement of Protein Homology Models.

Wildberg A, Della Corte D, Schröder GF.

J Chem Theory Comput. 2015 Dec 8;11(12):5578-82. doi: 10.1021/acs.jctc.5b00942. Epub 2015 Nov 11.

PMID:
26642980
8.

Protein structure refinement with adaptively restrained homologous replicas.

Della Corte D, Wildberg A, Schröder GF.

Proteins. 2016 Sep;84 Suppl 1:302-13. doi: 10.1002/prot.24939. Epub 2015 Oct 27.

PMID:
26441154
9.

Archaeal actin from a hyperthermophile forms a single-stranded filament.

Braun T, Orlova A, Valegård K, Lindås AC, Schröder GF, Egelman EH.

Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):9340-5. doi: 10.1073/pnas.1509069112. Epub 2015 Jun 29.

10.

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop.

Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley SK, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, Gutmanas A, Henderson R, Hummer G, Iwasaki K, Johnson G, Lawson CL, Meiler J, Marti-Renom MA, Montelione GT, Nilges M, Nussinov R, Patwardhan A, Rappsilber J, Read RJ, Saibil H, Schröder GF, Schwieters CD, Seidel CA, Svergun D, Topf M, Ulrich EL, Velankar S, Westbrook JD.

Structure. 2015 Jul 7;23(7):1156-67. doi: 10.1016/j.str.2015.05.013. Epub 2015 Jun 18.

11.

Improving the visualization of cryo-EM density reconstructions.

Spiegel M, Duraisamy AK, Schröder GF.

J Struct Biol. 2015 Aug;191(2):207-13. doi: 10.1016/j.jsb.2015.06.007. Epub 2015 Jun 10.

PMID:
26072056
12.

Hybrid methods for macromolecular structure determination: experiment with expectations.

Schröder GF.

Curr Opin Struct Biol. 2015 Apr;31:20-7. doi: 10.1016/j.sbi.2015.02.016. Epub 2015 Mar 18. Review.

PMID:
25795086
13.

Near-atomic resolution for one state of F-actin.

Galkin VE, Orlova A, Vos MR, Schröder GF, Egelman EH.

Structure. 2015 Jan 6;23(1):173-182. doi: 10.1016/j.str.2014.11.006. Epub 2014 Dec 18.

14.

Deformable elastic network refinement for low-resolution macromolecular crystallography.

Schröder GF, Levitt M, Brunger AT.

Acta Crystallogr D Biol Crystallogr. 2014 Sep;70(Pt 9):2241-55. doi: 10.1107/S1399004714016496. Epub 2014 Aug 29.

15.

Unified polymerization mechanism for the assembly of ASC-dependent inflammasomes.

Lu A, Magupalli VG, Ruan J, Yin Q, Atianand MK, Vos MR, Schröder GF, Fitzgerald KA, Wu H, Egelman EH.

Cell. 2014 Mar 13;156(6):1193-1206. doi: 10.1016/j.cell.2014.02.008.

16.

Ligand-induced structural changes in the cyclic nucleotide-modulated potassium channel MloK1.

Kowal J, Chami M, Baumgartner P, Arheit M, Chiu PL, Rangl M, Scheuring S, Schröder GF, Nimigean CM, Stahlberg H.

Nat Commun. 2014;5:3106. doi: 10.1038/ncomms4106.

17.

Energy barriers and driving forces in tRNA translocation through the ribosome.

Bock LV, Blau C, Schröder GF, Davydov II, Fischer N, Stark H, Rodnina MV, Vaiana AC, Grubmüller H.

Nat Struct Mol Biol. 2013 Dec;20(12):1390-6. doi: 10.1038/nsmb.2690. Epub 2013 Nov 3.

PMID:
24186064
18.

Visualizing GroEL/ES in the act of encapsulating a folding protein.

Chen DH, Madan D, Weaver J, Lin Z, Schröder GF, Chiu W, Rye HS.

Cell. 2013 Jun 6;153(6):1354-65. doi: 10.1016/j.cell.2013.04.052.

19.

Cross-validation in cryo-EM-based structural modeling.

Falkner B, Schröder GF.

Proc Natl Acad Sci U S A. 2013 May 28;110(22):8930-5. doi: 10.1073/pnas.1119041110. Epub 2013 May 14.

20.

The crystal structures of the eukaryotic chaperonin CCT reveal its functional partitioning.

Kalisman N, Schröder GF, Levitt M.

Structure. 2013 Apr 2;21(4):540-9. doi: 10.1016/j.str.2013.01.017. Epub 2013 Mar 7.

21.

Small-angle X-ray scattering of apolipoprotein A-IV reveals the importance of its termini for structural stability.

Deng X, Morris J, Chaton C, Schröder GF, Davidson WS, Thompson TB.

J Biol Chem. 2013 Feb 15;288(7):4854-66. doi: 10.1074/jbc.M112.436709. Epub 2013 Jan 3.

22.

Real-space refinement with DireX: from global fitting to side-chain improvements.

Wang Z, Schröder GF.

Biopolymers. 2012 Sep;97(9):687-97. doi: 10.1002/bip.22046.

PMID:
22696405
23.

Improving the accuracy of macromolecular structure refinement at 7 Å resolution.

Brunger AT, Adams PD, Fromme P, Fromme R, Levitt M, Schröder GF.

Structure. 2012 Jun 6;20(6):957-66. doi: 10.1016/j.str.2012.04.020.

24.

Filaments from Ignicoccus hospitalis show diversity of packing in proteins containing N-terminal type IV pilin helices.

Yu X, Goforth C, Meyer C, Rachel R, Wirth R, Schröder GF, Egelman EH.

J Mol Biol. 2012 Sep 14;422(2):274-81. doi: 10.1016/j.jmb.2012.05.031. Epub 2012 May 30.

25.

Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from Corynebacterium glutamicum.

Brunger AT, Das D, Deacon AM, Grant J, Terwilliger TC, Read RJ, Adams PD, Levitt M, Schröder GF.

Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):391-403. doi: 10.1107/S090744491104978X. Epub 2012 Mar 16.

26.

A grid-enabled web service for low-resolution crystal structure refinement.

O'Donovan DJ, Stokes-Rees I, Nam Y, Blacklow SC, Schröder GF, Brunger AT, Sliz P.

Acta Crystallogr D Biol Crystallogr. 2012 Mar;68(Pt 3):261-7. doi: 10.1107/S0907444912001163. Epub 2012 Feb 14.

27.

Branchpoint expansion in a fully complementary three-way DNA junction.

Sabir T, Toulmin A, Ma L, Jones AC, McGlynn P, Schröder GF, Magennis SW.

J Am Chem Soc. 2012 Apr 11;134(14):6280-5. doi: 10.1021/ja211802z. Epub 2012 Mar 1.

PMID:
22329743
28.

Outcome of the first electron microscopy validation task force meeting.

Henderson R, Sali A, Baker ML, Carragher B, Devkota B, Downing KH, Egelman EH, Feng Z, Frank J, Grigorieff N, Jiang W, Ludtke SJ, Medalia O, Penczek PA, Rosenthal PB, Rossmann MG, Schmid MF, Schröder GF, Steven AC, Stokes DL, Westbrook JD, Wriggers W, Yang H, Young J, Berman HM, Chiu W, Kleywegt GJ, Lawson CL.

Structure. 2012 Feb 8;20(2):205-14. doi: 10.1016/j.str.2011.12.014.

29.

Remodeling of actin filaments by ADF/cofilin proteins.

Galkin VE, Orlova A, Kudryashov DS, Solodukhin A, Reisler E, Schröder GF, Egelman EH.

Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20568-72. doi: 10.1073/pnas.1110109108. Epub 2011 Dec 7.

30.

Symmetry-free cryo-EM structures of the chaperonin TRiC along its ATPase-driven conformational cycle.

Cong Y, Schröder GF, Meyer AS, Jakana J, Ma B, Dougherty MT, Schmid MF, Reissmann S, Levitt M, Ludtke SL, Frydman J, Chiu W.

EMBO J. 2012 Feb 1;31(3):720-30. doi: 10.1038/emboj.2011.366. Epub 2011 Nov 1.

31.

Structure of myxovirus resistance protein a reveals intra- and intermolecular domain interactions required for the antiviral function.

Gao S, von der Malsburg A, Dick A, Faelber K, Schröder GF, Haller O, Kochs G, Daumke O.

Immunity. 2011 Oct 28;35(4):514-25. doi: 10.1016/j.immuni.2011.07.012. Epub 2011 Sep 29.

32.

The refined structure of functional unit h of keyhole limpet hemocyanin (KLH1-h) reveals disulfide bridges.

Jaenicke E, Büchler K, Decker H, Markl J, Schröder GF.

IUBMB Life. 2011 Mar;63(3):183-7. doi: 10.1002/iub.435.

33.

A spring-loaded release mechanism regulates domain movement and catalysis in phosphoglycerate kinase.

Zerrad L, Merli A, Schröder GF, Varga A, Gráczer É, Pernot P, Round A, Vas M, Bowler MW.

J Biol Chem. 2011 Apr 22;286(16):14040-8. doi: 10.1074/jbc.M110.206813. Epub 2011 Feb 24.

34.

Global structure of forked DNA in solution revealed by high-resolution single-molecule FRET.

Sabir T, Schröder GF, Toulmin A, McGlynn P, Magennis SW.

J Am Chem Soc. 2011 Feb 9;133(5):1188-91. doi: 10.1021/ja108626w. Epub 2010 Dec 21.

PMID:
21174398
35.

Structural polymorphism in F-actin.

Galkin VE, Orlova A, Schröder GF, Egelman EH.

Nat Struct Mol Biol. 2010 Nov;17(11):1318-23. doi: 10.1038/nsmb.1930. Epub 2010 Oct 10.

36.

Super-resolution biomolecular crystallography with low-resolution data.

Schröder GF, Levitt M, Brunger AT.

Nature. 2010 Apr 22;464(7292):1218-22. doi: 10.1038/nature08892. Epub 2010 Apr 7.

37.

Mechanism of folding chamber closure in a group II chaperonin.

Zhang J, Baker ML, Schröder GF, Douglas NR, Reissmann S, Jakana J, Dougherty M, Fu CJ, Levitt M, Ludtke SJ, Frydman J, Chiu W.

Nature. 2010 Jan 21;463(7279):379-83. doi: 10.1038/nature08701.

38.

Single-molecule FRET measures bends and kinks in DNA.

Wozniak AK, Schröder GF, Grubmüller H, Seidel CA, Oesterhelt F.

Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18337-42. doi: 10.1073/pnas.0800977105. Epub 2008 Nov 19.

39.

Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution.

Lange OF, Lakomek NA, Farès C, Schröder GF, Walter KF, Becker S, Meiler J, Grubmüller H, Griesinger C, de Groot BL.

Science. 2008 Jun 13;320(5882):1471-5. doi: 10.1126/science.1157092.

41.

Detecting protein-induced folding of the U4 snRNA kink-turn by single-molecule multiparameter FRET measurements.

Woźniak AK, Nottrott S, Kühn-Hölsken E, Schröder GF, Grubmüller H, Lührmann R, Seidel CA, Oesterhelt F.

RNA. 2005 Oct;11(10):1545-54.

42.

Simulation of fluorescence anisotropy experiments: probing protein dynamics.

Schröder GF, Alexiev U, Grubmüller H.

Biophys J. 2005 Dec;89(6):3757-70. Epub 2005 Sep 16.

43.

Single-molecule fluorescence resonance energy transfer reveals a dynamic equilibrium between closed and open conformations of syntaxin 1.

Margittai M, Widengren J, Schweinberger E, Schröder GF, Felekyan S, Haustein E, König M, Fasshauer D, Grubmüller H, Jahn R, Seidel CA.

Proc Natl Acad Sci U S A. 2003 Dec 23;100(26):15516-21. Epub 2003 Dec 10.

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