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Items: 27

1.

Variant genotyping with gap filling.

Walve R, Salmela L, Mäkinen V.

PLoS One. 2017 Sep 8;12(9):e0184608. doi: 10.1371/journal.pone.0184608. eCollection 2017.

2.

Human leucocyte antigens B*08, DRB1*03 and DRB1*13 are significantly associated with autoimmune liver and biliary diseases in Finnish children.

Ylinen E, Salmela L, Peräsaari J, Jaatinen T, Tenca A, Vapalahti O, Färkkilä M, Jalanko H, Kolho KL.

Acta Paediatr. 2017 Feb;106(2):322-326. doi: 10.1111/apa.13641. Epub 2016 Nov 16.

PMID:
27759901
3.

Accurate self-correction of errors in long reads using de Bruijn graphs.

Salmela L, Walve R, Rivals E, Ukkonen E.

Bioinformatics. 2017 Mar 15;33(6):799-806. doi: 10.1093/bioinformatics/btw321.

4.

Gap Filling as Exact Path Length Problem.

Salmela L, Sahlin K, Mäkinen V, Tomescu AI.

J Comput Biol. 2016 May;23(5):347-61. doi: 10.1089/cmb.2015.0197. Epub 2016 Mar 9.

PMID:
26959081
5.

Colib'read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads.

Le Bras Y, Collin O, Monjeaud C, Lacroix V, Rivals É, Lemaitre C, Miele V, Sacomoto G, Marchet C, Cazaux B, Zine El Aabidine A, Salmela L, Alves-Carvalho S, Andrieux A, Uricaru R, Peterlongo P.

Gigascience. 2016 Feb 11;5:9. doi: 10.1186/s13742-015-0105-2. eCollection 2016.

6.

Flight-induced changes in gene expression in the Glanville fritillary butterfly.

Kvist J, Mattila AL, Somervuo P, Ahola V, Koskinen P, Paulin L, Salmela L, Fountain T, Rastas P, Ruokolainen A, Taipale M, Holm L, Auvinen P, Lehtonen R, Frilander MJ, Hanski I.

Mol Ecol. 2015 Oct;24(19):4886-900. doi: 10.1111/mec.13359.

PMID:
26331775
7.

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera.

Ahola V, Lehtonen R, Somervuo P, Salmela L, Koskinen P, Rastas P, Välimäki N, Paulin L, Kvist J, Wahlberg N, Tanskanen J, Hornett EA, Ferguson LC, Luo S, Cao Z, de Jong MA, Duplouy A, Smolander OP, Vogel H, McCoy RC, Qian K, Chong WS, Zhang Q, Ahmad F, Haukka JK, Joshi A, Salojärvi J, Wheat CW, Grosse-Wilde E, Hughes D, Katainen R, Pitkänen E, Ylinen J, Waterhouse RM, Turunen M, Vähärautio A, Ojanen SP, Schulman AH, Taipale M, Lawson D, Ukkonen E, Mäkinen V, Goldsmith MR, Holm L, Auvinen P, Frilander MJ, Hanski I.

Nat Commun. 2014 Sep 5;5:4737. doi: 10.1038/ncomms5737.

8.

LoRDEC: accurate and efficient long read error correction.

Salmela L, Rivals E.

Bioinformatics. 2014 Dec 15;30(24):3506-14. doi: 10.1093/bioinformatics/btu538. Epub 2014 Aug 26.

9.

A continuous flow method for estimation of drug release rates from emulsion formulations.

Salmela L, Washington C.

Int J Pharm. 2014 Sep 10;472(1-2):276-81. doi: 10.1016/j.ijpharm.2014.06.024. Epub 2014 Jun 16.

PMID:
24945139
10.

Normalized N50 assembly metric using gap-restricted co-linear chaining.

Mäkinen V, Salmela L, Ylinen J.

BMC Bioinformatics. 2012 Oct 3;13:255. doi: 10.1186/1471-2105-13-255.

11.

Fast scaffolding with small independent mixed integer programs.

Salmela L, Mäkinen V, Välimäki N, Ylinen J, Ukkonen E.

Bioinformatics. 2011 Dec 1;27(23):3259-65. doi: 10.1093/bioinformatics/btr562. Epub 2011 Oct 13.

12.

Relationship between very low birth weight, environmental factors, and motor and cognitive development of children of 5 and 6 years old.

Oliveira GE, Magalhães LC, Salmela LF.

Rev Bras Fisioter. 2011 Mar-Apr;15(2):138-45. English, Portuguese.

13.

Correcting errors in short reads by multiple alignments.

Salmela L, Schröder J.

Bioinformatics. 2011 Jun 1;27(11):1455-61. doi: 10.1093/bioinformatics/btr170. Epub 2011 Apr 5.

PMID:
21471014
14.

Correction of sequencing errors in a mixed set of reads.

Salmela L.

Bioinformatics. 2010 May 15;26(10):1284-90. doi: 10.1093/bioinformatics/btq151. Epub 2010 Apr 8.

PMID:
20378555
15.

Single-injection brachial plexus anesthesia for arteriovenous fistula surgery of the forearm: a comparison of infraclavicular coracoid and axillary approach.

Niemi TT, Salmela L, Aromaa U, Pöyhiä R, Rosenberg PH.

Reg Anesth Pain Med. 2007 Jan-Feb;32(1):55-9.

PMID:
17196493
16.

Intra-atrial ECG guidance for positioning central vein catheters.

Salmela L, Aromaa U.

Br J Anaesth. 2004 Apr;92(4):599; author reply 600-1. No abstract available.

PMID:
15013963
17.

Comparison of rocuronium and suxamethonium for use during rapid sequence induction of anaesthesia.

McCourt KC, Salmela L, Mirakhur RK, Carroll M, Mäkinen MT, Kansanaho M, Kerr C, Roest GJ, Olkkola KT.

Anaesthesia. 1998 Sep;53(9):867-71.

19.

Leg and back pain after spinal anaesthesia involving hyperbaric 5% lignocaine.

Salmela L, Aromaa U, Cozanitis DA.

Anaesthesia. 1996 Apr;51(4):391-3.

20.

The effect of prostatic capsule perforation on the absorption of irrigating fluid during transurethral resection.

Salmela L, Aromaa U, Lehtonen T, Peura P, Olkkola KT.

Br J Urol. 1993 Nov;72(5 Pt 1):599-604.

PMID:
10071545
21.
22.

Massive blood transfusion: is there a limit?

Michelsen T, Salmela L, Tigerstedt I, Mäkeläinen A, Linko K.

Crit Care Med. 1989 Jul;17(7):699-700. No abstract available.

PMID:
2736935
23.

Double-blind comparison of transdermal scopolamine, droperidol and placebo against postoperative nausea and vomiting.

Tigerstedt I, Salmela L, Aromaa U.

Acta Anaesthesiol Scand. 1988 Aug;32(6):454-7.

PMID:
3051839
24.

Elevation of substance P-like peptides in the CSF of psychiatric patients.

Rimón R, Le Grevés P, Nyberg F, Heikkilä L, Salmela L, Terenius L.

Biol Psychiatry. 1984 Apr;19(4):509-16.

PMID:
6203562
25.

On the treatment and prognosis of malignant ascites: is the survival time determined when the abdominal paracentesis is needed?

Appelqvist P, Silvo J, Salmela L, Kostiainen S.

J Surg Oncol. 1982 Aug;20(4):238-42.

PMID:
6180252
26.

Immunoglobulin G antibodies to herpes simplex type 1 virus detected by radioimmunoassay in serum and cerebrospinal fluid of patients with schizophrenia.

Rimón R, Halonen P, Puhakka P, Laitinen L, Marttila R, Salmela L.

J Clin Psychiatry. 1979 May;40(5):241-3.

PMID:
438149
27.

[Marching fractures in the Pori brigade].

Salmela L.

Sotilaslaak Aikak. 1969;44(1):12-6. Finnish. No abstract available.

PMID:
5372053

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