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Items: 16

1.

Navigating in a sea of genes.

Rynearson TA.

Science. 2017 Dec 1;358(6367):1129-1130. doi: 10.1126/science.aar3431. No abstract available.

PMID:
29191892
2.

Evidence for environmental and ecological selection in a microbe with no geographic limits to gene flow.

Whittaker KA, Rynearson TA.

Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):2651-2656. doi: 10.1073/pnas.1612346114. Epub 2017 Feb 16.

3.

Persistent Intra-Specific Variation in Genetic and Behavioral Traits in the Raphidophyte, Heterosigma akashiwo.

Harvey EL, Menden-Deuer S, Rynearson TA.

Front Microbiol. 2015 Nov 25;6:1277. doi: 10.3389/fmicb.2015.01277. eCollection 2015.

4.

Metatranscriptome analyses indicate resource partitioning between diatoms in the field.

Alexander H, Jenkins BD, Rynearson TA, Dyhrman ST.

Proc Natl Acad Sci U S A. 2015 Apr 28;112(17):E2182-90. doi: 10.1073/pnas.1421993112. Epub 2015 Apr 13. Erratum in: Proc Natl Acad Sci U S A. 2016 Jun 21;113(25):E3589.

5.

Experimental evolution gone wild.

Scheinin M, Riebesell U, Rynearson TA, Lohbeck KT, Collins S.

J R Soc Interface. 2015 May 6;12(106). pii: 20150056. doi: 10.1098/rsif.2015.0056.

6.

Evolutionary potential of marine phytoplankton under ocean acidification.

Collins S, Rost B, Rynearson TA.

Evol Appl. 2014 Jan;7(1):140-55. doi: 10.1111/eva.12120. Epub 2013 Nov 25.

7.

Marine phytoplankton temperature versus growth responses from polar to tropical waters--outcome of a scientific community-wide study.

Boyd PW, Rynearson TA, Armstrong EA, Fu F, Hayashi K, Hu Z, Hutchins DA, Kudela RM, Litchman E, Mulholland MR, Passow U, Strzepek RF, Whittaker KA, Yu E, Thomas MK.

PLoS One. 2013 May 21;8(5):e63091. doi: 10.1371/journal.pone.0063091. Print 2013.

8.

Identifying reference genes with stable expression from high throughput sequence data.

Alexander H, Jenkins BD, Rynearson TA, Saito MA, Mercier ML, Dyhrman ST.

Front Microbiol. 2012 Nov 9;3:385. doi: 10.3389/fmicb.2012.00385. eCollection 2012.

9.

Molecular subdivision of the marine diatom Thalassiosira rotula in relation to geographic distribution, genome size, and physiology.

Whittaker KA, Rignanese DR, Olson RJ, Rynearson TA.

BMC Evol Biol. 2012 Oct 26;12:209. doi: 10.1186/1471-2148-12-209.

10.

The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response.

Dyhrman ST, Jenkins BD, Rynearson TA, Saito MA, Mercier ML, Alexander H, Whitney LP, Drzewianowski A, Bulygin VV, Bertrand EM, Wu Z, Benitez-Nelson C, Heithoff A.

PLoS One. 2012;7(3):e33768. doi: 10.1371/journal.pone.0033768. Epub 2012 Mar 29.

11.

Learning to read the oceans genomics of marine phytoplankton.

Rynearson TA, Palenik B.

Adv Mar Biol. 2011;60:1-39. doi: 10.1016/B978-0-12-385529-9.00001-9. Review.

PMID:
21962749
12.

Empirical bayes analysis of sequencing-based transcriptional profiling without replicates.

Wu Z, Jenkins BD, Rynearson TA, Dyhrman ST, Saito MA, Mercier M, Whitney LP.

BMC Bioinformatics. 2010 Nov 16;11:564. doi: 10.1186/1471-2105-11-564.

13.

Metapopulation Structure in the Planktonic Diatom Ditylum brightwellii (Bacillariophyceae).

Rynearson TA, Lin EO, Armbrust EV.

Protist. 2009 Feb;160(1):111-21. doi: 10.1016/j.protis.2008.10.003. Epub 2008 Dec 10.

PMID:
19083268
14.

The Phaeodactylum genome reveals the evolutionary history of diatom genomes.

Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, Heijde M, Katinka M, Mock T, Valentin K, Verret F, Berges JA, Brownlee C, Cadoret JP, Chiovitti A, Choi CJ, Coesel S, De Martino A, Detter JC, Durkin C, Falciatore A, Fournet J, Haruta M, Huysman MJ, Jenkins BD, Jiroutova K, Jorgensen RE, Joubert Y, Kaplan A, Kröger N, Kroth PG, La Roche J, Lindquist E, Lommer M, Martin-Jézéquel V, Lopez PJ, Lucas S, Mangogna M, McGinnis K, Medlin LK, Montsant A, Oudot-Le Secq MP, Napoli C, Obornik M, Parker MS, Petit JL, Porcel BM, Poulsen N, Robison M, Rychlewski L, Rynearson TA, Schmutz J, Shapiro H, Siaut M, Stanley M, Sussman MR, Taylor AR, Vardi A, von Dassow P, Vyverman W, Willis A, Wyrwicz LS, Rokhsar DS, Weissenbach J, Armbrust EV, Green BR, Van de Peer Y, Grigoriev IV.

Nature. 2008 Nov 13;456(7219):239-44. doi: 10.1038/nature07410. Epub 2008 Oct 15.

PMID:
18923393
15.
16.

The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism.

Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, Detter JC, Glavina T, Goodstein D, Hadi MZ, Hellsten U, Hildebrand M, Jenkins BD, Jurka J, Kapitonov VV, Kröger N, Lau WW, Lane TW, Larimer FW, Lippmeier JC, Lucas S, Medina M, Montsant A, Obornik M, Parker MS, Palenik B, Pazour GJ, Richardson PM, Rynearson TA, Saito MA, Schwartz DC, Thamatrakoln K, Valentin K, Vardi A, Wilkerson FP, Rokhsar DS.

Science. 2004 Oct 1;306(5693):79-86.

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