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Strain-Dependent Variation in Acute Ischemic Muscle Injury.

Schmidt CA, Amorese AJ, Ryan TE, Goldberg EJ, Tarpey MD, Green TD, Karnekar RR, Yamaguchi DJ, Spangenburg EE, McClung JM.

Am J Pathol. 2018 Feb 15. pii: S0002-9440(17)30802-7. doi: 10.1016/j.ajpath.2018.01.008. [Epub ahead of print]


Near-infrared spectroscopy detects age-related differences in skeletal muscle oxidative function: promising implications for geroscience.

Chung S, Rosenberry R, Ryan TE, Munson M, Dombrowsky T, Park S, Nasirian A, Haykowsky MJ, Nelson MD.

Physiol Rep. 2018 Feb;6(3). doi: 10.14814/phy2.13588.


17β-Estradiol Directly Lowers Mitochondrial Membrane Microviscosity and Improves Bioenergetic Function in Skeletal Muscle.

Torres MJ, Kew KA, Ryan TE, Pennington ER, Lin CT, Buddo KA, Fix AM, Smith CA, Gilliam LA, Karvinen S, Lowe DA, Spangenburg EE, Zeczycki TN, Shaikh SR, Neufer PD.

Cell Metab. 2018 Jan 9;27(1):167-179.e7. doi: 10.1016/j.cmet.2017.10.003. Epub 2017 Nov 2.


Greater Oxidative Capacity in Primary Myotubes from Endurance-trained Women.

Heden TD, Ryan TE, Ferrara PJ, Hickner RC, Brophy PM, Neufer PD, McClung JM, Funai K.

Med Sci Sports Exerc. 2017 Nov;49(11):2151-2157. doi: 10.1249/MSS.0000000000001352.


BAG3 (Bcl-2-Associated Athanogene-3) Coding Variant in Mice Determines Susceptibility to Ischemic Limb Muscle Myopathy by Directing Autophagy.

McClung JM, McCord TJ, Ryan TE, Schmidt CA, Green TD, Southerland KW, Reinardy JL, Mueller SB, Venkatraman TN, Lascola CD, Keum S, Marchuk DA, Spangenburg EE, Dokun A, Annex BH, Kontos CD.

Circulation. 2017 Jul 18;136(3):281-296. doi: 10.1161/CIRCULATIONAHA.116.024873. Epub 2017 Apr 25.


Diminished force production and mitochondrial respiratory deficits are strain-dependent myopathies of subacute limb ischemia.

Schmidt CA, Ryan TE, Lin CT, Inigo MMR, Green TD, Brault JJ, Spangenburg EE, McClung JM.

J Vasc Surg. 2017 May;65(5):1504-1514.e11. doi: 10.1016/j.jvs.2016.04.041. Epub 2016 Dec 23.


Endurance neuromuscular electrical stimulation training improves skeletal muscle oxidative capacity in individuals with motor-complete spinal cord injury.

Erickson ML, Ryan TE, Backus D, McCully KK.

Muscle Nerve. 2017 May;55(5):669-675. doi: 10.1002/mus.25393. Epub 2017 Jan 11.


A Direct Comparison of Metabolic Responses to High-Fat Diet in C57BL/6J and C57BL/6NJ Mice.

Fisher-Wellman KH, Ryan TE, Smith CD, Gilliam LA, Lin CT, Reese LR, Torres MJ, Neufer PD.

Diabetes. 2016 Nov;65(11):3249-3261. Epub 2016 Aug 5.


Direct real-time quantification of mitochondrial oxidative phosphorylation efficiency in permeabilized skeletal muscle myofibers.

Lark DS, Torres MJ, Lin CT, Ryan TE, Anderson EJ, Neufer PD.

Am J Physiol Cell Physiol. 2016 Aug 1;311(2):C239-45. doi: 10.1152/ajpcell.00124.2016. Epub 2016 Jun 22.


Targeted overexpression of mitochondrial catalase protects against cancer chemotherapy-induced skeletal muscle dysfunction.

Gilliam LA, Lark DS, Reese LR, Torres MJ, Ryan TE, Lin CT, Cathey BL, Neufer PD.

Am J Physiol Endocrinol Metab. 2016 Aug 1;311(2):E293-301. doi: 10.1152/ajpendo.00540.2015. Epub 2016 Jun 21.


Targeted Expression of Catalase to Mitochondria Protects Against Ischemic Myopathy in High-Fat Diet-Fed Mice.

Ryan TE, Schmidt CA, Green TD, Spangenburg EE, Neufer PD, McClung JM.

Diabetes. 2016 Sep;65(9):2553-68. doi: 10.2337/db16-0387. Epub 2016 Jun 9.


Mitochondrial therapy improves limb perfusion and myopathy following hindlimb ischemia.

Ryan TE, Schmidt CA, Alleman RJ, Tsang AM, Green TD, Neufer PD, Brown DA, McClung JM.

J Mol Cell Cardiol. 2016 Aug;97:191-6. doi: 10.1016/j.yjmcc.2016.05.015. Epub 2016 Jun 1.


Ceramide-tamoxifen regimen targets bioenergetic elements in acute myelogenous leukemia.

Morad SA, Ryan TE, Neufer PD, Zeczycki TN, Davis TS, MacDougall MR, Fox TE, Tan SF, Feith DJ, Loughran TP Jr, Kester M, Claxton DF, Barth BM, Deering TG, Cabot MC.

J Lipid Res. 2016 Jul;57(7):1231-42. doi: 10.1194/jlr.M067389. Epub 2016 May 2.


Exercise-induced protection against reperfusion arrhythmia involves stabilization of mitochondrial energetics.

Alleman RJ, Tsang AM, Ryan TE, Patteson DJ, McClung JM, Spangenburg EE, Shaikh SR, Neufer PD, Brown DA.

Am J Physiol Heart Circ Physiol. 2016 May 15;310(10):H1360-70. doi: 10.1152/ajpheart.00858.2015. Epub 2016 Mar 4.


Mitochondrial Regulation of the Muscle Microenvironment in Critical Limb Ischemia.

Ryan TE, Schmidt CA, Green TD, Brown DA, Neufer PD, McClung JM.

Front Physiol. 2015 Nov 18;6:336. doi: 10.3389/fphys.2015.00336. eCollection 2015. Review.


Protein Kinase A Governs Oxidative Phosphorylation Kinetics and Oxidant Emitting Potential at Complex I.

Lark DS, Reese LR, Ryan TE, Torres MJ, Smith CD, Lin CT, Neufer PD.

Front Physiol. 2015 Nov 17;6:332. doi: 10.3389/fphys.2015.00332. eCollection 2015.


Isocitrate-to-SENP1 signaling amplifies insulin secretion and rescues dysfunctional β cells.

Ferdaoussi M, Dai X, Jensen MV, Wang R, Peterson BS, Huang C, Ilkayeva O, Smith N, Miller N, Hajmrle C, Spigelman AF, Wright RC, Plummer G, Suzuki K, Mackay JP, van de Bunt M, Gloyn AL, Ryan TE, Norquay LD, Brosnan MJ, Trimmer JK, Rolph TP, Kibbey RG, Manning Fox JE, Colmers WF, Shirihai OS, Neufer PD, Yeh ET, Newgard CB, MacDonald PE.

J Clin Invest. 2015 Oct 1;125(10):3847-60. doi: 10.1172/JCI82498. Epub 2015 Sep 21.


Subacute limb ischemia induces skeletal muscle injury in genetically susceptible mice independent of vascular density.

McClung JM, McCord TJ, Southerland K, Schmidt CA, Padgett ME, Ryan TE, Kontos CD.

J Vasc Surg. 2016 Oct;64(4):1101-1111.e2. doi: 10.1016/j.jvs.2015.06.139. Epub 2015 Aug 5.


Muscle cell derived angiopoietin-1 contributes to both myogenesis and angiogenesis in the ischemic environment.

McClung JM, Reinardy JL, Mueller SB, McCord TJ, Kontos CD, Brown DA, Hussain SN, Schmidt CA, Ryan TE, Green TD.

Front Physiol. 2015 May 19;6:161. doi: 10.3389/fphys.2015.00161. eCollection 2015.


Effects of Low-Volume, High-Intensity Whole-Body Calisthenics on Army ROTC Cadets.

Gist NH, Freese EC, Ryan TE, Cureton KJ.

Mil Med. 2015 May;180(5):492-8. doi: 10.7205/MILMED-D-14-00277.


Reduced skeletal muscle oxidative capacity and impaired training adaptations in heart failure.

Southern WM, Ryan TE, Kepple K, Murrow JR, Nilsson KR, McCully KK.

Physiol Rep. 2015 Apr;3(4). pii: e12353. doi: 10.14814/phy2.12353.


Pyruvate dehydrogenase complex and nicotinamide nucleotide transhydrogenase constitute an energy-consuming redox circuit.

Fisher-Wellman KH, Lin CT, Ryan TE, Reese LR, Gilliam LA, Cathey BL, Lark DS, Smith CD, Muoio DM, Neufer PD.

Biochem J. 2015 Apr 15;467(2):271-80. doi: 10.1042/BJ20141447.


Androgen modulation of Foxp1 and Foxp2 in the developing rat brain: impact on sex specific vocalization.

Bowers JM, Perez-Pouchoulen M, Roby CR, Ryan TE, McCarthy MM.

Endocrinology. 2014 Dec;155(12):4881-94. doi: 10.1210/en.2014-1486. Epub 2014 Sep 23.


Assessment of in vivo skeletal muscle mitochondrial respiratory capacity in humans by near-infrared spectroscopy: a comparison with in situ measurements.

Ryan TE, Brophy P, Lin CT, Hickner RC, Neufer PD.

J Physiol. 2014 Aug 1;592(15):3231-41. doi: 10.1113/jphysiol.2014.274456. Epub 2014 Jun 20.


Reproducibility of near-infrared spectroscopy measurements of oxidative function and postexercise recovery kinetics in the medial gastrocnemius muscle.

Southern WM, Ryan TE, Reynolds MA, McCully K.

Appl Physiol Nutr Metab. 2014 May;39(5):521-9. doi: 10.1139/apnm-2013-0347. Epub 2013 Nov 20.


Skeletal muscle oxidative capacity in amyotrophic lateral sclerosis.

Ryan TE, Erickson ML, Verma A, Chavez J, Rivner MH, Mccully KK.

Muscle Nerve. 2014 Nov;50(5):767-74. doi: 10.1002/mus.24223. Epub 2014 Sep 29.


A cross-validation of near-infrared spectroscopy measurements of skeletal muscle oxidative capacity with phosphorus magnetic resonance spectroscopy.

Ryan TE, Southern WM, Reynolds MA, McCully KK.

J Appl Physiol (1985). 2013 Dec;115(12):1757-66. doi: 10.1152/japplphysiol.00835.2013. Epub 2013 Oct 17.


Identification and target strength of orange roughy (Hoplostethus atlanticus) measured in situ.

Kloser RJ, Macaulay GJ, Ryan TE, Lewis M.

J Acoust Soc Am. 2013 Jul;134(1):97-108. doi: 10.1121/1.4807748.


Case report: endurance electrical stimulation training improves skeletal muscle oxidative capacity in chronic spinal cord injury.

Ryan TE, Erickson ML, Young HJ, McCully KK.

Arch Phys Med Rehabil. 2013 Dec;94(12):2559-61. doi: 10.1016/j.apmr.2013.06.014. Epub 2013 Jun 28.


Electrically induced resistance training in individuals with motor complete spinal cord injury.

Ryan TE, Brizendine JT, Backus D, McCully KK.

Arch Phys Med Rehabil. 2013 Nov;94(11):2166-73. doi: 10.1016/j.apmr.2013.06.016. Epub 2013 Jun 28.


Near-infrared assessments of skeletal muscle oxidative capacity in persons with spinal cord injury.

Erickson ML, Ryan TE, Young HJ, McCully KK.

Eur J Appl Physiol. 2013 Sep;113(9):2275-83. doi: 10.1007/s00421-013-2657-0. Epub 2013 May 24.


Activity-induced changes in skeletal muscle metabolism measured with optical spectroscopy.

Ryan TE, Southern WM, Brizendine JT, McCully KK.

Med Sci Sports Exerc. 2013 Dec;45(12):2346-52. doi: 10.1249/MSS.0b013e31829a726a.


Skeletal muscle metabolism in endurance athletes with near-infrared spectroscopy.

Brizendine JT, Ryan TE, Larson RD, McCully KK.

Med Sci Sports Exerc. 2013 May;45(5):869-75. doi: 10.1249/MSS.0b013e31827e0eb6. Erratum in: Med Sci Sports Exerc. 2013 Aug;45(8):1640-1.


A comparison of exercise type and intensity on the noninvasive assessment of skeletal muscle mitochondrial function using near-infrared spectroscopy.

Ryan TE, Brizendine JT, McCully KK.

J Appl Physiol (1985). 2013 Jan 15;114(2):230-7. doi: 10.1152/japplphysiol.01043.2012. Epub 2012 Nov 15.


Noninvasive evaluation of skeletal muscle mitochondrial capacity with near-infrared spectroscopy: correcting for blood volume changes.

Ryan TE, Erickson ML, Brizendine JT, Young HJ, McCully KK.

J Appl Physiol (1985). 2012 Jul;113(2):175-83. doi: 10.1152/japplphysiol.00319.2012. Epub 2012 May 10.


von Willebrand factor (VWF) propeptide binding to VWF D'D3 domain attenuates platelet activation and adhesion.

Madabhushi SR, Shang C, Dayananda KM, Rittenhouse-Olson K, Murphy M, Ryan TE, Montgomery RR, Neelamegham S.

Blood. 2012 May 17;119(20):4769-78. doi: 10.1182/blood-2011-10-387548. Epub 2012 Mar 27.


A genome-wide RNAi screen identifies novel targets of neratinib resistance leading to identification of potential drug resistant genetic markers.

Seyhan AA, Varadarajan U, Choe S, Liu W, Ryan TE.

Mol Biosyst. 2012 Apr;8(5):1553-70. doi: 10.1039/c2mb05512k. Epub 2012 Mar 23.


Rosiglitazone Induces Mitochondrial Biogenesis in Differentiated Murine 3T3-L1 and C3H/10T1/2 Adipocytes.

Rong JX, Klein JL, Qiu Y, Xie M, Johnson JH, Waters KM, Zhang V, Kashatus JA, Remlinger KS, Bing N, Crosby RM, Jackson TK, Witherspoon SM, Moore JT, Ryan TE, Neill SD, Strum JC.

PPAR Res. 2011;2011:179454. doi: 10.1155/2011/179454. Epub 2011 Oct 15.


Skeletal muscle metabolism in individuals with spinal cord injury.

McCully KK, Mulcahy TK, Ryan TE, Zhao Q.

J Appl Physiol (1985). 2011 Jul;111(1):143-8. doi: 10.1152/japplphysiol.00094.2011. Epub 2011 Apr 21.


A genome-wide RNAi screen identifies novel targets of neratinib sensitivity leading to neratinib and paclitaxel combination drug treatments.

Seyhan AA, Varadarajan U, Choe S, Liu Y, McGraw J, Woods M, Murray S, Eckert A, Liu W, Ryan TE.

Mol Biosyst. 2011 Jun;7(6):1974-89. doi: 10.1039/c0mb00294a. Epub 2011 Apr 12.


Integration of metabolomics and transcriptomics data to aid biomarker discovery in type 2 diabetes.

Connor SC, Hansen MK, Corner A, Smith RF, Ryan TE.

Mol Biosyst. 2010 May;6(5):909-21. doi: 10.1039/b914182k. Epub 2010 Mar 23.


An in silico analysis of microRNAs: mining the miRNAome.

Murray BS, Choe SE, Woods M, Ryan TE, Liu W.

Mol Biosyst. 2010 Oct;6(10):1853-62. doi: 10.1039/c003961f. Epub 2010 Jun 11.


Integrating titania enrichment, iTRAQ labeling, and Orbitrap CID-HCD for global identification and quantitative analysis of phosphopeptides.

Wu J, Warren P, Shakey Q, Sousa E, Hill A, Ryan TE, He T.

Proteomics. 2010 Jun;10(11):2224-34. doi: 10.1002/pmic.200900788.


Neoplastic and non-neoplastic changes in F-344 rats treated with Naveglitazar, a gamma-dominant PPAR alpha/gamma agonist.

Long GG, Reynolds VL, Dochterman LW, Ryan TE.

Toxicol Pathol. 2009 Oct;37(6):741-53. doi: 10.1177/0192623309343775. Epub 2009 Aug 21.


A global benchmark study using affinity-based biosensors.

Rich RL, Papalia GA, Flynn PJ, Furneisen J, Quinn J, Klein JS, Katsamba PS, Waddell MB, Scott M, Thompson J, Berlier J, Corry S, Baltzinger M, Zeder-Lutz G, Schoenemann A, Clabbers A, Wieckowski S, Murphy MM, Page P, Ryan TE, Duffner J, Ganguly T, Corbin J, Gautam S, Anderluh G, Bavdek A, Reichmann D, Yadav SP, Hommema E, Pol E, Drake A, Klakamp S, Chapman T, Kernaghan D, Miller K, Schuman J, Lindquist K, Herlihy K, Murphy MB, Bohnsack R, Andrien B, Brandani P, Terwey D, Millican R, Darling RJ, Wang L, Carter Q, Dotzlaf J, Lopez-Sagaseta J, Campbell I, Torreri P, Hoos S, England P, Liu Y, Abdiche Y, Malashock D, Pinkerton A, Wong M, Lafer E, Hinck C, Thompson K, Primo CD, Joyce A, Brooks J, Torta F, Bagge Hagel AB, Krarup J, Pass J, Ferreira M, Shikov S, Mikolajczyk M, Abe Y, Barbato G, Giannetti AM, Krishnamoorthy G, Beusink B, Satpaev D, Tsang T, Fang E, Partridge J, Brohawn S, Horn J, Pritsch O, Obal G, Nilapwar S, Busby B, Gutierrez-Sanchez G, Gupta RD, Canepa S, Witte K, Nikolovska-Coleska Z, Cho YH, D'Agata R, Schlick K, Calvert R, Munoz EM, Hernaiz MJ, Bravman T, Dines M, Yang MH, Puskas A, Boni E, Li J, Wear M, Grinberg A, Baardsnes J, Dolezal O, Gainey M, Anderson H, Peng J, Lewis M, Spies P, Trinh Q, Bibikov S, Raymond J, Yousef M, Chandrasekaran V, Feng Y, Emerick A, Mundodo S, Guimaraes R, McGirr K, Li YJ, Hughes H, Mantz H, Skrabana R, Witmer M, Ballard J, Martin L, Skladal P, Korza G, Laird-Offringa I, Lee CS, Khadir A, Podlaski F, Neuner P, Rothacker J, Rafique A, Dankbar N, Kainz P, Gedig E, Vuyisich M, Boozer C, Ly N, Toews M, Uren A, Kalyuzhniy O, Lewis K, Chomey E, Pak BJ, Myszka DG.

Anal Biochem. 2009 Mar 15;386(2):194-216. doi: 10.1016/j.ab.2008.11.021. Epub 2008 Nov 27.


Multi-platform investigation of the metabolome in a leptin receptor defective murine model of type 2 diabetes.

Gipson GT, Tatsuoka KS, Ball RJ, Sokhansanj BA, Hansen MK, Ryan TE, Hodson MP, Sweatman BC, Connor SC.

Mol Biosyst. 2008 Oct;4(10):1015-23. doi: 10.1039/b807332e. Epub 2008 Aug 7.


Urothelial carcinogenesis in the urinary bladder of rats treated with naveglitazar, a gamma-dominant PPAR alpha/gamma agonist: lack of evidence for urolithiasis as an inciting event.

Long GG, Reynolds VL, Lopez-Martinez A, Ryan TE, White SL, Eldridge SR.

Toxicol Pathol. 2008 Feb;36(2):218-31. doi: 10.1177/0192623307311757.


Adipose mitochondrial biogenesis is suppressed in db/db and high-fat diet-fed mice and improved by rosiglitazone.

Rong JX, Qiu Y, Hansen MK, Zhu L, Zhang V, Xie M, Okamoto Y, Mattie MD, Higashiyama H, Asano S, Strum JC, Ryan TE.

Diabetes. 2007 Jul;56(7):1751-60. Epub 2007 Apr 24.


Enhanced insulin-like growth factor-I (IGF-I) cell association at reduced pH is dependent on IGF binding protein-3 (IGFBP-3) interaction.

Forsten-Williams K, Cassino TR, Delo LJ, Bellis AD, Robinson AS, Ryan TE.

J Cell Physiol. 2007 Feb;210(2):298-308.


Comparative analysis of 10 small molecules binding to carbonic anhydrase II by different investigators using Biacore technology.

Papalia GA, Leavitt S, Bynum MA, Katsamba PS, Wilton R, Qiu H, Steukers M, Wang S, Bindu L, Phogat S, Giannetti AM, Ryan TE, Pudlak VA, Matusiewicz K, Michelson KM, Nowakowski A, Pham-Baginski A, Brooks J, Tieman BC, Bruce BD, Vaughn M, Baksh M, Cho YH, Wit MD, Smets A, Vandersmissen J, Michiels L, Myszka DG.

Anal Biochem. 2006 Dec 1;359(1):94-105. Epub 2006 Sep 7.


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