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Items: 1 to 50 of 142

1.

Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats.

Jay ZJ, Beam JP, Dlakić M, Rusch DB, Kozubal MA, Inskeep WP.

Nat Microbiol. 2018 May 14. doi: 10.1038/s41564-018-0163-1. [Epub ahead of print]

PMID:
29760463
2.

EPIGENETIC TARGETING OF ADIPOCYTES INHIBITS HIGH-GRADE SEROUS OVARIAN CANCER CELL MIGRATION AND INVASION.

Tang J, Pulliam N, Ozes A, Buechlein A, Ding N, Rusch D, Keer H, O'Hagan H, Stack MS, Nephew KP.

Mol Cancer Res. 2018 May 14. pii: molcanres.0406.2017. doi: 10.1158/1541-7786.MCR-17-0406. [Epub ahead of print]

PMID:
29759990
3.

Promoter Boundaries for the luxCDABE and betIBA-proXWV Operons in Vibrio harveyi Defined by the Method Rapid Arbitrary PCR Insertion Libraries (RAIL).

Hustmyer CM, Simpson CA, Olney SG, Rusch DB, Bochman ML, van Kessel JC.

J Bacteriol. 2018 May 9;200(11). pii: e00724-17. doi: 10.1128/JB.00724-17. Print 2018 Jun 1.

PMID:
29531178
4.

In children, the microbiota of the nasopharynx and bronchoalveolar lavage fluid are both similar and different.

Kloepfer KM, Deschamp AR, Ross SE, Peterson-Carmichael SL, Hemmerich CM, Rusch DB, Davis SD.

Pediatr Pulmonol. 2018 Apr;53(4):475-482. doi: 10.1002/ppul.23953. Epub 2018 Feb 6.

PMID:
29405661
5.

RNA polymerases IV and V influence the 3' boundaries of Polymerase II transcription units in Arabidopsis.

McKinlay A, Podicheti R, Wendte JM, Cocklin R, Rusch DB.

RNA Biol. 2018 Feb 1;15(2):269-279. doi: 10.1080/15476286.2017.1409930. Epub 2017 Dec 21.

PMID:
29199514
6.

Genes linked to species diversity in a sexually dimorphic communication signal in electric fish.

Smith GT, Proffitt MR, Smith AR, Rusch DB.

J Comp Physiol A Neuroethol Sens Neural Behav Physiol. 2018 Jan;204(1):93-112. doi: 10.1007/s00359-017-1223-3. Epub 2017 Oct 20.

PMID:
29058069
7.

Pain During Venous Cannulation.

Rüsch D, Koch T, Spies M, Hj Eberhart L.

Dtsch Arztebl Int. 2017 Sep 15;114(37):605-611. doi: 10.3238/arztebl.2017.0605.

8.

Complete Genome Sequence of the Pathogenic Vibrio vulnificus Type Strain ATCC 27562.

Rusch DB, Rowe-Magnus DA.

Genome Announc. 2017 Aug 31;5(35). pii: e00907-17. doi: 10.1128/genomeA.00907-17.

9.

Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes.

Orsini L, Brown JB, Shams Solari O, Li D, He S, Podicheti R, Stoiber MH, Spanier KI, Gilbert D, Jansen M, Rusch DB, Pfrender ME, Colbourne JK, Frilander MJ, Kvist J, Decaestecker E, De Schamphelaere KAC, De Meester L.

Mol Ecol. 2018 Feb;27(4):886-897. doi: 10.1111/mec.14261. Epub 2017 Aug 19.

PMID:
28746735
10.

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.

Orsini L, Gilbert D, Podicheti R, Jansen M, Brown JB, Solari OS, Spanier KI, Colbourne JK, Rusch DB, Decaestecker E, Asselman J, De Schamphelaere KA, Ebert D, Haag CR, Kvist J, Laforsch C, Petrusek A, Beckerman AP, Little TJ, Chaturvedi A, Pfrender ME, De Meester L, Frilander MJ.

Sci Data. 2017 Jan 31;4:170006. doi: 10.1038/sdata.2017.6. No abstract available.

11.

MicroRNA-335-5p and -3p synergize to inhibit estrogen receptor alpha expression and promote tamoxifen resistance.

Martin EC, Conger AK, Yan TJ, Hoang VT, Miller DF, Buechlein A, Rusch DB, Nephew KP, Collins-Burow BM, Burow ME.

FEBS Lett. 2017 Jan;591(2):382-392. doi: 10.1002/1873-3468.12538. Epub 2017 Jan 12.

12.

Complete Transcriptome RNA-Seq.

Miller DF, Yan P, Fang F, Buechlein A, Kroll K, Frankhouser D, Stump C, Stump P, Ford JB, Tang H, Michaels S, Matei D, Huang TH, Chien J, Liu Y, Rusch DB, Nephew KP.

Methods Mol Biol. 2017;1513:141-162.

PMID:
27807835
13.

Vapocoolant Spray Versus Lidocaine Infiltration for Radial Artery Cannulation: A Prospective, Randomized, Controlled Clinical Trial.

Rüsch D, Koch T, Seel F, Eberhart L.

J Cardiothorac Vasc Anesth. 2017 Feb;31(1):77-83. doi: 10.1053/j.jvca.2016.06.008. Epub 2016 Jun 8.

PMID:
27590462
14.

Coping strategies in anxious surgical patients.

Aust H, Rüsch D, Schuster M, Sturm T, Brehm F, Nestoriuc Y.

BMC Health Serv Res. 2016 Jul 12;16:250. doi: 10.1186/s12913-016-1492-5.

15.

Speciation and ecological success in dimly lit waters: horizontal gene transfer in a green sulfur bacteria bloom unveiled by metagenomic assembly.

Llorens-Marès T, Liu Z, Allen LZ, Rusch DB, Craig MT, Dupont CL, Bryant DA, Casamayor EO.

ISME J. 2017 Jan;11(1):201-211. doi: 10.1038/ismej.2016.93. Epub 2016 Jul 8.

16.

Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution.

Díez B, Nylander JA, Ininbergs K, Dupont CL, Allen AE, Yooseph S, Rusch DB, Bergman B.

PLoS One. 2016 May 19;11(5):e0155757. doi: 10.1371/journal.pone.0155757. eCollection 2016.

17.

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.

Orsini L, Gilbert D, Podicheti R, Jansen M, Brown JB, Solari OS, Spanier KI, Colbourne JK, Rusch DB, Decaestecker E, Asselman J, De Schamphelaere KA, Ebert D, Haag CR, Kvist J, Laforsch C, Petrusek A, Beckerman AP, Little TJ, Chaturvedi A, Pfrender ME, De Meester L, Frilander MJ.

Sci Data. 2016 May 10;3:160030. doi: 10.1038/sdata.2016.30. Erratum in: Sci Data. 2017 Jan 31;4:170006. Rush, Douglas [corrected to Rusch, Douglas B].

18.

The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National Park.

Jay ZJ, Beam JP, Kozubal MA, Jennings RD, Rusch DB, Inskeep WP.

Environ Microbiol. 2016 Dec;18(12):4755-4769. doi: 10.1111/1462-2920.13366. Epub 2016 May 30.

PMID:
27130276
19.

Novel, Deep-Branching Heterotrophic Bacterial Populations Recovered from Thermal Spring Metagenomes.

Colman DR, Jay ZJ, Inskeep WP, Jennings Rd, Maas KR, Rusch DB, Takacs-Vesbach CD.

Front Microbiol. 2016 Mar 15;7:304. doi: 10.3389/fmicb.2016.00304. eCollection 2016.

20.

Recombination Does Not Hinder Formation or Detection of Ecological Species of Synechococcus Inhabiting a Hot Spring Cyanobacterial Mat.

Melendrez MC, Becraft ED, Wood JM, Olsen MT, Bryant DA, Heidelberg JF, Rusch DB, Cohan FM, Ward DM.

Front Microbiol. 2016 Jan 14;6:1540. doi: 10.3389/fmicb.2015.01540. eCollection 2015.

21.

Randomized Controlled Trial of Exercise for ADHD and Disruptive Behavior Disorders.

Bustamante EE, Davis CL, Frazier SL, Rusch D, Fogg LF, Atkins MS, Marquez DX.

Med Sci Sports Exerc. 2016 Jul;48(7):1397-407. doi: 10.1249/MSS.0000000000000891.

22.

Regulation of triple-negative breast cancer cell metastasis by the tumor-suppressor liver kinase B1.

Rhodes LV, Tate CR, Hoang VT, Burks HE, Gilliam D, Martin EC, Elliott S, Miller DB, Buechlein A, Rusch D, Tang H, Nephew KP, Burow ME, Collins-Burow BM.

Oncogenesis. 2015 Oct 5;4:e168. doi: 10.1038/oncsis.2015.27.

23.

Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis.

Blevins T, Podicheti R, Mishra V, Marasco M, Wang J, Rusch D, Tang H, Pikaard CS.

Elife. 2015 Oct 2;4:e09591. doi: 10.7554/eLife.09591.

24.

DNA sequence templates adjacent nucleosome and ORC sites at gene amplification origins in Drosophila.

Liu J, Zimmer K, Rusch DB, Paranjape N, Podicheti R, Tang H, Calvi BR.

Nucleic Acids Res. 2015 Oct 15;43(18):8746-61. doi: 10.1093/nar/gkv766. Epub 2015 Jul 30.

25.

The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat.

Olsen MT, Nowack S, Wood JM, Becraft ED, LaButti K, Lipzen A, Martin J, Schackwitz WS, Rusch DB, Cohan FM, Bryant DA, Ward DM.

Front Microbiol. 2015 Jun 23;6:604. doi: 10.3389/fmicb.2015.00604. eCollection 2015.

26.

The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park.

Becraft ED, Wood JM, Rusch DB, Kühl M, Jensen SI, Bryant DA, Roberts DW, Cohan FM, Ward DM.

Front Microbiol. 2015 Jun 22;6:590. doi: 10.3389/fmicb.2015.00590. eCollection 2015.

27.

Future Directions for Dissemination and Implementation Science: Aligning Ecological Theory and Public Health to Close the Research to Practice Gap.

Atkins MS, Rusch D, Mehta TG, Lakind D.

J Clin Child Adolesc Psychol. 2016;45(2):215-26. doi: 10.1080/15374416.2015.1050724. Epub 2015 Jul 9.

28.

Ecophysiology of an uncultivated lineage of Aigarchaeota from an oxic, hot spring filamentous 'streamer' community.

Beam JP, Jay ZJ, Schmid MC, Rusch DB, Romine MF, Jennings Rde M, Kozubal MA, Tringe SG, Wagner M, Inskeep WP.

ISME J. 2016 Jan;10(1):210-24. doi: 10.1038/ismej.2015.83. Epub 2015 Jul 3.

29.

Dual regulation by microRNA-200b-3p and microRNA-200b-5p in the inhibition of epithelial-to-mesenchymal transition in triple-negative breast cancer.

Rhodes LV, Martin EC, Segar HC, Miller DF, Buechlein A, Rusch DB, Nephew KP, Burow ME, Collins-Burow BM.

Oncotarget. 2015 Jun 30;6(18):16638-52.

30.

Concordance of bacterial communities of two tick species and blood of their shared rodent host.

Rynkiewicz EC, Hemmerich C, Rusch DB, Fuqua C, Clay K.

Mol Ecol. 2015 May;24(10):2566-79. doi: 10.1111/mec.13187. Epub 2015 Apr 22.

PMID:
25847197
31.

Noncoding regions of C. elegans mRNA undergo selective adenosine to inosine deamination and contain a small number of editing sites per transcript.

Wheeler EC, Washburn MC, Major F, Rusch DB, Hundley HA.

RNA Biol. 2015;12(2):162-74. doi: 10.1080/15476286.2015.1017220.

32.

Stranded Whole Transcriptome RNA-Seq for All RNA Types.

Miller DF, Yan PX, Fang F, Buechlein A, Ford JB, Tang H, Huang TH, Burow ME, Liu Y, Rusch DB, Nephew KP.

Curr Protoc Hum Genet. 2015 Jan 20;84:11.14.1-23. doi: 10.1002/0471142905.hg1114s84.

33.

Activity-based cost analysis of opioid-related nausea and vomiting among inpatients.

Eberhart L, Koch T, Kranke P, Rüsch D, Torossian A, Nardi-Hiebl S.

J Opioid Manag. 2014 Nov-Dec;10(6):415-22. doi: 10.5055/jom.2014.0238.

PMID:
25531959
34.

Building Resilience After School for Early Adolescents in Urban Poverty: Open Trial of Leaders @ Play.

Frazier SL, Dinizulu SM, Rusch D, Boustani MM, Mehta TG, Reitz K.

Adm Policy Ment Health. 2015 Nov;42(6):723-36. doi: 10.1007/s10488-014-0608-7.

PMID:
25425012
35.

Impact of medical training and clinical experience on the assessment of oxygenation and hypoxaemia after general anaesthesia: an observational study.

Aust H, Kranke P, Eberhart LH, Afshari A, Weber F, Brieskorn M, Heine J, Arndt C, Rüsch D.

J Clin Monit Comput. 2015 Jun;29(3):415-26. doi: 10.1007/s10877-014-9620-4. Epub 2014 Sep 25.

PMID:
25273623
36.

Mapping RNA Sequences that Contact Viral Capsid Proteins in Virions.

Kao CC, Chuang E, Ford J, Huang J, Podicheti R, Rusch DB.

Bio Protoc. 2014 Jul 20;7(14). pii: e2398. doi: 10.21769/BioProtoc.2398.

37.

Effects of the endocrine-disrupting chemical DDT on self-renewal and differentiation of human mesenchymal stem cells.

Strong AL, Shi Z, Strong MJ, Miller DF, Rusch DB, Buechlein AM, Flemington EK, McLachlan JA, Nephew KP, Burow ME, Bunnell BA.

Environ Health Perspect. 2015 Jan;123(1):42-8. doi: 10.1289/ehp.1408188. Epub 2014 Jul 11.

38.

Saccharide breakdown and fermentation by the honey bee gut microbiome.

Lee FJ, Rusch DB, Stewart FJ, Mattila HR, Newton IL.

Environ Microbiol. 2015 Mar;17(3):796-815. doi: 10.1111/1462-2920.12526. Epub 2014 Jul 8.

PMID:
24905222
39.

Building capacity within community-based organizations: new directions for mental health promotion for Latino immigrant families in urban poverty.

Rusch D, Frazier SL, Atkins M.

Adm Policy Ment Health. 2015 Jan;42(1):1-5. doi: 10.1007/s10488-014-0549-1. No abstract available.

PMID:
24718647
40.

Children's responses to hypothetical provocation by peers: coordination of assertive and aggressive strategies.

Dirks MA, Suor JH, Rusch D, Frazier SL.

J Abnorm Child Psychol. 2014 Oct;42(7):1077-87. doi: 10.1007/s10802-014-9862-0.

PMID:
24668163
41.

A two-step process for epigenetic inheritance in Arabidopsis.

Blevins T, Pontvianne F, Cocklin R, Podicheti R, Chandrasekhara C, Yerneni S, Braun C, Lee B, Rusch D, Mockaitis K, Tang H, Pikaard CS.

Mol Cell. 2014 Apr 10;54(1):30-42. doi: 10.1016/j.molcel.2014.02.019. Epub 2014 Mar 20.

42.

Components of a standardised olive leaf dry extract (Ph. Eur.) promote hypothiocyanite production by lactoperoxidase.

Flemmig J, Rusch D, Czerwińska ME, Rauwald HW, Arnhold J.

Arch Biochem Biophys. 2014 May 1;549:17-25. doi: 10.1016/j.abb.2014.03.006. Epub 2014 Mar 18.

PMID:
24657078
43.

Functional tradeoffs underpin salinity-driven divergence in microbial community composition.

Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, Andersson AF, Tenney A, Lundin D, Tovchigrechko A, Nylander JA, Brami D, Badger JH, Allen AE, Rusch DB, Hoffman J, Norrby E, Friedman R, Pinhassi J, Venter JC, Bergman B.

PLoS One. 2014 Feb 27;9(2):e89549. doi: 10.1371/journal.pone.0089549. eCollection 2014.

44.

Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, CA, March 27, 2013.

Garrity GM, Banfield J, Eisen J, van der Lelie N, McMahon T, Rusch D, Delong E, Moran MA, Currie C, Furhman J, Hallam S, Hugenholtz P, Moran N, Nelson K, Roberts R, Stepanauskas R.

Stand Genomic Sci. 2013 Jul 30;8(3):561-70. doi: 10.4056/sigs.4638348. eCollection 2013 Jul 30.

45.

Predominant Acidilobus-like populations from geothermal environments in yellowstone national park exhibit similar metabolic potential in different hypoxic microbial communities.

Jay ZJ, Rusch DB, Tringe SG, Bailey C, Jennings RM, Inskeep WP.

Appl Environ Microbiol. 2014 Jan;80(1):294-305. doi: 10.1128/AEM.02860-13. Epub 2013 Oct 25.

46.

Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments.

Klatt CG, Inskeep WP, Herrgard MJ, Jay ZJ, Rusch DB, Tringe SG, Niki Parenteau M, Ward DM, Boomer SM, Bryant DA, Miller SR.

Front Microbiol. 2013 Jun 3;4:106. doi: 10.3389/fmicb.2013.00106. eCollection 2013.

47.

Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three aquificales lineages.

Takacs-Vesbach C, Inskeep WP, Jay ZJ, Herrgard MJ, Rusch DB, Tringe SG, Kozubal MA, Hamamura N, Macur RE, Fouke BW, Reysenbach AL, McDermott TR, Jennings Rd, Hengartner NW, Xie G.

Front Microbiol. 2013 May 29;4:84. doi: 10.3389/fmicb.2013.00084. eCollection 2013.

48.

Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry.

Inskeep WP, Jay ZJ, Herrgard MJ, Kozubal MA, Rusch DB, Tringe SG, Macur RE, Jennings Rd, Boyd ES, Spear JR, Roberto FF.

Front Microbiol. 2013 May 15;4:95. doi: 10.3389/fmicb.2013.00095. eCollection 2013.

49.

[On preoperative risk evaluation of adult patients before elective non-cardiac surgery: results of a survey on clinical practice in the Federal State of Hessen].

Aust H, Veltum B, Wächtershäuser T, Eberhart L, Wulf H, Rüsch D.

Anaesthesist. 2013 May;62(5):365-79. doi: 10.1007/s00101-013-2168-8. Epub 2013 May 10. German.

PMID:
23657533
50.

The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem.

Inskeep WP, Jay ZJ, Tringe SG, Herrgård MJ, Rusch DB; YNP Metagenome Project Steering Committee and Working Group Members.

Front Microbiol. 2013 May 6;4:67. doi: 10.3389/fmicb.2013.00067. eCollection 2013.

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