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Items: 1 to 50 of 110

1.

Motile cilia create fluid-mechanical microhabitats for the active recruitment of the host microbiome.

Nawroth JC, Guo H, Koch E, Heath-Heckman EAC, Hermanson JC, Ruby EG, Dabiri JO, Kanso E, McFall-Ngai M.

Proc Natl Acad Sci U S A. 2017 Sep 5;114(36):9510-9516. doi: 10.1073/pnas.1706926114. Epub 2017 Aug 23.

2.

Model-enabled gene search (MEGS) allows fast and direct discovery of enzymatic and transport gene functions in the marine bacterium Vibrio fischeri.

Pan S, Nikolakakis K, Adamczyk PA, Pan M, Ruby EG, Reed JL.

J Biol Chem. 2017 Jun 16;292(24):10250-10261. doi: 10.1074/jbc.M116.763193. Epub 2017 Apr 26.

PMID:
28446608
3.

Bactericidal Permeability-Increasing Proteins Shape Host-Microbe Interactions.

Chen F, Krasity BC, Peyer SM, Koehler S, Ruby EG, Zhang X, McFall-Ngai MJ.

MBio. 2017 Apr 4;8(2). pii: e00040-17. doi: 10.1128/mBio.00040-17.

4.

Transcriptional characterization of Vibrio fischeri during colonization of juvenile Euprymna scolopes.

Thompson LR, Nikolakakis K, Pan S, Reed J, Knight R, Ruby EG.

Environ Microbiol. 2017 May;19(5):1845-1856. doi: 10.1111/1462-2920.13684. Epub 2017 Mar 21.

5.

A genomic comparison of 13 symbiotic Vibrio fischeri isolates from the perspective of their host source and colonization behavior.

Bongrand C, Koch EJ, Moriano-Gutierrez S, Cordero OX, McFall-Ngai M, Polz MF, Ruby EG.

ISME J. 2016 Dec;10(12):2907-2917. doi: 10.1038/ismej.2016.69. Epub 2016 Apr 29.

6.

Stress as a Normal Cue in the Symbiotic Environment.

Schwartzman JA, Ruby EG.

Trends Microbiol. 2016 May;24(5):414-424. doi: 10.1016/j.tim.2016.02.012. Epub 2016 Mar 20. Review.

7.

Diverse high-torque bacterial flagellar motors assemble wider stator rings using a conserved protein scaffold.

Beeby M, Ribardo DA, Brennan CA, Ruby EG, Jensen GJ, Hendrixson DR.

Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):E1917-26. doi: 10.1073/pnas.1518952113. Epub 2016 Mar 14. Erratum in: Proc Natl Acad Sci U S A. 2016 May 10;113(19):E2759.

8.

Tools for the Microbiome: Nano and Beyond.

Biteen JS, Blainey PC, Cardon ZG, Chun M, Church GM, Dorrestein PC, Fraser SE, Gilbert JA, Jansson JK, Knight R, Miller JF, Ozcan A, Prather KA, Quake SR, Ruby EG, Silver PA, Taha S, van den Engh G, Weiss PS, Wong GC, Wright AT, Young TD.

ACS Nano. 2016 Jan 26;10(1):6-37. doi: 10.1021/acsnano.5b07826. Epub 2015 Dec 22. Review.

PMID:
26695070
9.

Characterization of the Vibrio fischeri Fatty Acid Chemoreceptors, VfcB and VfcB2.

Nikolakakis K, Monfils K, Moriano-Gutierrez S, Brennan CA, Ruby EG.

Appl Environ Microbiol. 2015 Nov 13;82(2):696-704. doi: 10.1128/AEM.02856-15. Print 2016 Jan 15.

10.

MICROBIOME. A unified initiative to harness Earth's microbiomes.

Alivisatos AP, Blaser MJ, Brodie EL, Chun M, Dangl JL, Donohue TJ, Dorrestein PC, Gilbert JA, Green JL, Jansson JK, Knight R, Maxon ME, McFall-Ngai MJ, Miller JF, Pollard KS, Ruby EG, Taha SA; Unified Microbiome Initiative Consortium.

Science. 2015 Oct 30;350(6260):507-8. doi: 10.1126/science.aac8480. Epub 2015 Oct 28. No abstract available.

PMID:
26511287
11.

A conserved chemical dialog of mutualism: lessons from squid and vibrio.

Schwartzman JA, Ruby EG.

Microbes Infect. 2016 Jan;18(1):1-10. doi: 10.1016/j.micinf.2015.08.016. Epub 2015 Sep 15. Review.

12.

A Single Host-Derived Glycan Impacts Key Regulatory Nodes of Symbiont Metabolism in a Coevolved Mutualism.

Pan M, Schwartzman JA, Dunn AK, Lu Z, Ruby EG.

MBio. 2015 Jul 14;6(4):e00811. doi: 10.1128/mBio.00811-15.

13.

Use of Hybridization Chain Reaction-Fluorescent In Situ Hybridization To Track Gene Expression by Both Partners during Initiation of Symbiosis.

Nikolakakis K, Lehnert E, McFall-Ngai MJ, Ruby EG.

Appl Environ Microbiol. 2015 Jul;81(14):4728-35. doi: 10.1128/AEM.00890-15. Epub 2015 May 8.

14.

The chemistry of negotiation: rhythmic, glycan-driven acidification in a symbiotic conversation.

Schwartzman JA, Koch E, Heath-Heckman EA, Zhou L, Kremer N, McFall-Ngai MJ, Ruby EG.

Proc Natl Acad Sci U S A. 2015 Jan 13;112(2):566-71. doi: 10.1073/pnas.1418580112. Epub 2014 Dec 30.

15.

The putative oligosaccharide translocase SypK connects biofilm formation with quorum signaling in Vibrio fischeri.

Miyashiro T, Oehlert D, Ray VA, Visick KL, Ruby EG.

Microbiologyopen. 2014 Dec;3(6):836-48. doi: 10.1002/mbo3.199. Epub 2014 Sep 25.

16.

The dual nature of haemocyanin in the establishment and persistence of the squid-vibrio symbiosis.

Kremer N, Schwartzman J, Augustin R, Zhou L, Ruby EG, Hourdez S, McFall-Ngai MJ.

Proc Biol Sci. 2014 May 7;281(1785):20140504. doi: 10.1098/rspb.2014.0504. Print 2014 Jun 22.

17.

A model symbiosis reveals a role for sheathed-flagellum rotation in the release of immunogenic lipopolysaccharide.

Brennan CA, Hunt JR, Kremer N, Krasity BC, Apicella MA, McFall-Ngai MJ, Ruby EG.

Elife. 2014 Mar 4;3:e01579. doi: 10.7554/eLife.01579.

18.

Non-native acylated homoserine lactones reveal that LuxIR quorum sensing promotes symbiont stability.

Studer SV, Schwartzman JA, Ho JS, Geske GD, Blackwell HE, Ruby EG.

Environ Microbiol. 2014 Aug;16(8):2623-2634. doi: 10.1111/1462-2920.12322. Epub 2013 Nov 28.

19.

Features governing symbiont persistence in the squid-vibrio association.

Koch EJ, Miyashiro T, McFall-Ngai MJ, Ruby EG.

Mol Ecol. 2014 Mar;23(6):1624-34. doi: 10.1111/mec.12474. Epub 2013 Oct 1.

20.

Initial symbiont contact orchestrates host-organ-wide transcriptional changes that prime tissue colonization.

Kremer N, Philipp EE, Carpentier MC, Brennan CA, Kraemer L, Altura MA, Augustin R, Häsler R, Heath-Heckman EA, Peyer SM, Schwartzman J, Rader BA, Ruby EG, Rosenstiel P, McFall-Ngai MJ.

Cell Host Microbe. 2013 Aug 14;14(2):183-94. doi: 10.1016/j.chom.2013.07.006.

21.

Genetic determinants of swimming motility in the squid light-organ symbiont Vibrio fischeri.

Brennan CA, Mandel MJ, Gyllborg MC, Thomasgard KA, Ruby EG.

Microbiologyopen. 2013 Aug;2(4):576-94. doi: 10.1002/mbo3.96. Epub 2013 Jun 12.

22.

The first engagement of partners in the Euprymna scolopes-Vibrio fischeri symbiosis is a two-step process initiated by a few environmental symbiont cells.

Altura MA, Heath-Heckman EA, Gillette A, Kremer N, Krachler AM, Brennan C, Ruby EG, Orth K, McFall-Ngai MJ.

Environ Microbiol. 2013 Nov;15(11):2937-50. doi: 10.1111/1462-2920.12179. Epub 2013 Jul 3.

23.

Animals in a bacterial world, a new imperative for the life sciences.

McFall-Ngai M, Hadfield MG, Bosch TC, Carey HV, Domazet-Lošo T, Douglas AE, Dubilier N, Eberl G, Fukami T, Gilbert SF, Hentschel U, King N, Kjelleberg S, Knoll AH, Kremer N, Mazmanian SK, Metcalf JL, Nealson K, Pierce NE, Rawls JF, Reid A, Ruby EG, Rumpho M, Sanders JG, Tautz D, Wernegreen JJ.

Proc Natl Acad Sci U S A. 2013 Feb 26;110(9):3229-36. doi: 10.1073/pnas.1218525110. Epub 2013 Feb 7. Review.

24.

Squid-derived chitin oligosaccharides are a chemotactic signal during colonization by Vibrio fischeri.

Mandel MJ, Schaefer AL, Brennan CA, Heath-Heckman EA, Deloney-Marino CR, McFall-Ngai MJ, Ruby EG.

Appl Environ Microbiol. 2012 Jul;78(13):4620-6. doi: 10.1128/AEM.00377-12. Epub 2012 Apr 20.

25.

Shedding light on bioluminescence regulation in Vibrio fischeri.

Miyashiro T, Ruby EG.

Mol Microbiol. 2012 Jun;84(5):795-806. doi: 10.1111/j.1365-2958.2012.08065.x. Epub 2012 May 2.

26.

O-antigen and core carbohydrate of Vibrio fischeri lipopolysaccharide: composition and analysis of their role in Euprymna scolopes light organ colonization.

Post DM, Yu L, Krasity BC, Choudhury B, Mandel MJ, Brennan CA, Ruby EG, McFall-Ngai MJ, Gibson BW, Apicella MA.

J Biol Chem. 2012 Mar 9;287(11):8515-30. doi: 10.1074/jbc.M111.324012. Epub 2012 Jan 13.

27.

The novel sigma factor-like regulator RpoQ controls luminescence, chitinase activity, and motility in Vibrio fischeri.

Cao X, Studer SV, Wassarman K, Zhang Y, Ruby EG, Miyashiro T.

MBio. 2012 Jan 10;3(1). pii: e00285-11. doi: 10.1128/mBio.00285-11. Print 2012.

28.

The N-acetyl-D-glucosamine repressor NagC of Vibrio fischeri facilitates colonization of Euprymna scolopes.

Miyashiro T, Klein W, Oehlert D, Cao X, Schwartzman J, Ruby EG.

Mol Microbiol. 2011 Nov;82(4):894-903. doi: 10.1111/j.1365-2958.2011.07858.x. Epub 2011 Oct 12.

29.

Polyphyly of non-bioluminescent Vibrio fischeri sharing a lux-locus deletion.

Wollenberg MS, Preheim SP, Polz MF, Ruby EG.

Environ Microbiol. 2012 Mar;14(3):655-68. doi: 10.1111/j.1462-2920.2011.02608.x. Epub 2011 Oct 9.

30.

The haem-uptake gene cluster in Vibrio fischeri is regulated by Fur and contributes to symbiotic colonization.

Septer AN, Wang Y, Ruby EG, Stabb EV, Dunn AK.

Environ Microbiol. 2011 Nov;13(11):2855-64. doi: 10.1111/j.1462-2920.2011.02558.x. Epub 2011 Aug 30.

31.

Phylogeny and fitness of Vibrio fischeri from the light organs of Euprymna scolopes in two Oahu, Hawaii populations.

Wollenberg MS, Ruby EG.

ISME J. 2012 Feb;6(2):352-62. doi: 10.1038/ismej.2011.92. Epub 2011 Jul 21.

32.

The roles of NO in microbial symbioses.

Wang Y, Ruby EG.

Cell Microbiol. 2011 Apr;13(4):518-26. doi: 10.1111/j.1462-5822.2011.01576.x. Epub 2011 Feb 21. Review.

33.

Vibrio fischeri flavohaemoglobin protects against nitric oxide during initiation of the squid-Vibrio symbiosis.

Wang Y, Dunn AK, Wilneff J, McFall-Ngai MJ, Spiro S, Ruby EG.

Mol Microbiol. 2010 Nov;78(4):903-15. doi: 10.1111/j.1365-2958.2010.07376.x. Epub 2010 Sep 29.

34.

Natural transformation of Vibrio fischeri requires tfoX and tfoY.

Pollack-Berti A, Wollenberg MS, Ruby EG.

Environ Microbiol. 2010 Aug;12(8):2302-11. doi: 10.1111/j.1462-2920.2010.02250.x. Epub 2010 Jun 1.

35.

A single qrr gene is necessary and sufficient for LuxO-mediated regulation in Vibrio fischeri.

Miyashiro T, Wollenberg MS, Cao X, Oehlert D, Ruby EG.

Mol Microbiol. 2010 Sep;77(6):1556-67. doi: 10.1111/j.1365-2958.2010.07309.x. Epub 2010 Aug 5.

36.

The alternative oxidase (AOX) gene in Vibrio fischeri is controlled by NsrR and upregulated in response to nitric oxide.

Dunn AK, Karr EA, Wang Y, Batton AR, Ruby EG, Stabb EV.

Mol Microbiol. 2010 Jul 1;77(1):44-55. doi: 10.1111/j.1365-2958.2010.07194.x. Epub 2010 May 4.

37.

H-NOX-mediated nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri.

Wang Y, Dufour YS, Carlson HK, Donohue TJ, Marletta MA, Ruby EG.

Proc Natl Acad Sci U S A. 2010 May 4;107(18):8375-80. doi: 10.1073/pnas.1003571107. Epub 2010 Apr 19.

38.

Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis.

Wier AM, Nyholm SV, Mandel MJ, Massengo-Tiassé RP, Schaefer AL, Koroleva I, Splinter-Bondurant S, Brown B, Manzella L, Snir E, Almabrazi H, Scheetz TE, Bonaldo Mde F, Casavant TL, Soares MB, Cronan JE, Reed JL, Ruby EG, McFall-Ngai MJ.

Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):2259-64. doi: 10.1073/pnas.0909712107. Epub 2010 Jan 19.

39.

Recognition between symbiotic Vibrio fischeri and the haemocytes of Euprymna scolopes.

Nyholm SV, Stewart JJ, Ruby EG, McFall-Ngai MJ.

Environ Microbiol. 2009 Feb;11(2):483-93. doi: 10.1111/j.1462-2920.2008.01788.x.

40.

A single regulatory gene is sufficient to alter bacterial host range.

Mandel MJ, Wollenberg MS, Stabb EV, Visick KL, Ruby EG.

Nature. 2009 Mar 12;458(7235):215-8. doi: 10.1038/nature07660. Epub 2009 Feb 1.

41.

Population structure of Vibrio fischeri within the light organs of Euprymna scolopes squid from Two Oahu (Hawaii) populations.

Wollenberg MS, Ruby EG.

Appl Environ Microbiol. 2009 Jan;75(1):193-202. doi: 10.1128/AEM.01792-08. Epub 2008 Nov 7.

42.

Symbiotic conversations are revealed under genetic interrogation.

Ruby EG.

Nat Rev Microbiol. 2008 Oct;6(10):752-62. doi: 10.1038/nrmicro1958. Review.

43.

Effects of colonization, luminescence, and autoinducer on host transcription during development of the squid-vibrio association.

Chun CK, Troll JV, Koroleva I, Brown B, Manzella L, Snir E, Almabrazi H, Scheetz TE, Bonaldo Mde F, Casavant TL, Soares MB, Ruby EG, McFall-Ngai MJ.

Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11323-8. doi: 10.1073/pnas.0802369105. Epub 2008 Aug 5.

44.

AinS quorum sensing regulates the Vibrio fischeri acetate switch.

Studer SV, Mandel MJ, Ruby EG.

J Bacteriol. 2008 Sep;190(17):5915-23. doi: 10.1128/JB.00148-08. Epub 2008 May 16.

45.
46.

Characterization of htrB and msbB mutants of the light organ symbiont Vibrio fischeri.

Adin DM, Phillips NJ, Gibson BW, Apicella MA, Ruby EG, McFall-Ngai MJ, Hall DB, Stabb EV.

Appl Environ Microbiol. 2008 Feb;74(3):633-44. Epub 2007 Dec 7.

47.

Transcriptome analysis of the Vibrio fischeri LuxR-LuxI regulon.

Antunes LC, Schaefer AL, Ferreira RB, Qin N, Stevens AM, Ruby EG, Greenberg EP.

J Bacteriol. 2007 Nov;189(22):8387-91. Epub 2007 Sep 7.

48.

Two-component response regulators of Vibrio fischeri: identification, mutagenesis, and characterization.

Hussa EA, O'Shea TM, Darnell CL, Ruby EG, Visick KL.

J Bacteriol. 2007 Aug;189(16):5825-38. Epub 2007 Jun 22.

49.

A novel lux operon in the cryptically bioluminescent fish pathogen Vibrio salmonicida is associated with virulence.

Nelson EJ, Tunsjø HS, Fidopiastis PM, Sørum H, Ruby EG.

Appl Environ Microbiol. 2007 Mar;73(6):1825-33. Epub 2007 Feb 2.

50.

The GacA global regulator of Vibrio fischeri is required for normal host tissue responses that limit subsequent bacterial colonization.

Whistler CA, Koropatnick TA, Pollack A, McFall-Ngai MJ, Ruby EG.

Cell Microbiol. 2007 Mar;9(3):766-78. Epub 2006 Nov 1.

PMID:
17081194

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