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Items: 8


A unified approach for quantifying and interpreting DNA shape readout by transcription factors.

Rube HT, Rastogi C, Kribelbauer JF, Bussemaker HJ.

Mol Syst Biol. 2018 Feb 22;14(2):e7902. doi: 10.15252/msb.20177902.


SelexGLM differentiates androgen and glucocorticoid receptor DNA-binding preference over an extended binding site.

Zhang L, Martini GD, Rube HT, Kribelbauer JF, Rastogi C, FitzPatrick VD, Houtman JC, Bussemaker HJ, Pufall MA.

Genome Res. 2018 Jan;28(1):111-121. doi: 10.1101/gr.222844.117. Epub 2017 Dec 1.


Quantitative analysis and prediction of G-quadruplex forming sequences in double-stranded DNA.

Kim M, Kreig A, Lee CY, Rube HT, Calvert J, Song JS, Myong S.

Nucleic Acids Res. 2016 Jun 2;44(10):4807-17. doi: 10.1093/nar/gkw272. Epub 2016 Apr 19.


Sequence features accurately predict genome-wide MeCP2 binding in vivo.

Rube HT, Lee W, Hejna M, Chen H, Yasui DH, Hess JF, LaSalle JM, Song JS, Gong Q.

Nat Commun. 2016 Mar 24;7:11025. doi: 10.1038/ncomms11025.


Understanding TERT Promoter Mutations: A Common Path to Immortality.

Bell RJ, Rube HT, Xavier-Magalhães A, Costa BM, Mancini A, Song JS, Costello JF.

Mol Cancer Res. 2016 Apr;14(4):315-23. doi: 10.1158/1541-7786.MCR-16-0003. Epub 2016 Mar 3. Review.


Categorical spectral analysis of periodicity in nucleosomal DNA.

Jin H, Rube HT, Song JS.

Nucleic Acids Res. 2016 Mar 18;44(5):2047-57. doi: 10.1093/nar/gkw101. Epub 2016 Feb 17.


Cancer. The transcription factor GABP selectively binds and activates the mutant TERT promoter in cancer.

Bell RJ, Rube HT, Kreig A, Mancini A, Fouse SD, Nagarajan RP, Choi S, Hong C, He D, Pekmezci M, Wiencke JK, Wrensch MR, Chang SM, Walsh KM, Myong S, Song JS, Costello JF.

Science. 2015 May 29;348(6238):1036-9. doi: 10.1126/science.aab0015. Epub 2015 May 14.


Quantifying the role of steric constraints in nucleosome positioning.

Rube HT, Song JS.

Nucleic Acids Res. 2014 Feb;42(4):2147-58. doi: 10.1093/nar/gkt1239. Epub 2013 Nov 27.

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